LOCUS       XM_017003987            3379 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens leucine rich repeat transmembrane neuronal
            1 (LRRTM1), transcript variant X3, mRNA.
ACCESSION   XM_017003987
VERSION     XM_017003987.3
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000002.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017003987.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="2"
     gene            1..3379
                     /gene="LRRTM1"
                     /note="leucine rich repeat transmembrane neuronal 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 3 ESTs, 65 long SRA reads, 6
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:347730"
                     /db_xref="HGNC:HGNC:19408"
                     /db_xref="MIM:610867"
     CDS             665..2233
                     /gene="LRRTM1"
                     /codon_start=1
                     /product="leucine-rich repeat transmembrane neuronal
                     protein 1 isoform X1"
                     /protein_id="XP_016859476.1"
                     /db_xref="GeneID:347730"
                     /db_xref="HGNC:HGNC:19408"
                     /db_xref="MIM:610867"
                     /translation="MDFLLLGLCLYWLLRRPSGVVLCLLGACFQMLPAAPSGCPQLCR
                     CEGRLLYCEALNLTEAPHNLSGLLGLSLRYNSLSELRAGQFTGLMQLTWLYLDHNHIC
                     SVQGDAFQKLRRVKELTLSSNQITQLPNTTFRPMPNLRSVDLSYNKLQALAPDLFHGL
                     RKLTTLHMRANAIQFVPVRIFQDCRSLKFLDIGYNQLKSLARNSFAGLFKLTELHLEH
                     NDLVKVNFAHFPRLISLHSLCLRRNKVAIVVSSLDWVWNLEKMDLSGNEIEYMEPHVF
                     ETVPHLQSLQLDSNRLTYIEPRILNSWKSLTSITLAGNLWDCGRNVCALASWLNNFQG
                     RYDGNLQCASPEYAQGEDVLDAVYAFHLCEDGAEPTSGHLLSAVTNRSDLGPPASSAT
                     TLADGGEGQHDGTFEPATVALPGGEHAENAVQIHKVVTGTMALIFSFLIVVLVLYVSW
                     KCFPASLRQLRQCFVTQRRKQKQKQTMHQMAAMSAQEYYVDYKPNHIEGALVIINEYG
                     SCTCHQQPARECEV"
     polyA_site      3379
                     /gene="LRRTM1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gacactcagt gagcagtagg tgcctgtgca agctcgcgcc gcacactgcc tggtggaggg
       61 aaggagcccg ggcgccgctc gccgctcccc gcgccgccgt ccgcacctcc ccaccgcccg
      121 ccgcccgccg cccgccgccc gcaaagcatg agtgagcccg ctctctgcag ctgcccgggg
      181 cgcgaatggc aggctgtttc cgcggagtaa aaggtggcgc cggtcagtgg tcgtttccaa
      241 tgacggacat taaccagact gtcagatcct ggggagtcgc gagccccgag tttggagttt
      301 tttcccccca caacgtcaca gtccgaactg cagagggaaa ggaaggcggc aggaaggcga
      361 agctcgggct ccggcacgta gttgggaaac ttgcgggtcc tagaagtcgc ctccccgcct
      421 tgccggccgc ccttgcagcc ccgagccgag cagcaaagtg agacattgtg cgcctgccag
      481 atccgccggc cgcggaccgg ggctgcctcg gaaacacaga ggggtcttct ctcgccctgc
      541 atataattag cctgcacaca aagggagcag ctgaatggag gttgtcactc tctggaaaag
      601 ggtggatttc tgaccgagcg cttccaatgg acattctcca gtctctctgg aaagattctc
      661 gctaatggat ttcctgctgc tcggtctctg tctatactgg ctgctgagga ggccctcggg
      721 ggtggtcttg tgtctgctgg gggcctgctt tcagatgctg cccgccgccc ccagcgggtg
      781 cccgcagctg tgccggtgcg aggggcggct gctgtactgc gaggcgctca acctcaccga
      841 ggcgccccac aacctgtccg gcctgctggg cttgtccctg cgctacaaca gcctctcgga
      901 gctgcgcgcc ggccagttca cggggttaat gcagctcacg tggctctatc tggatcacaa
      961 tcacatctgc tccgtgcagg gggacgcctt tcagaaactg cgccgagtta aggaactcac
     1021 gctgagttcc aaccagatca cccaactgcc caacaccacc ttccggccca tgcccaacct
     1081 gcgcagcgtg gacctctcgt acaacaagct gcaggcgctc gcgcccgacc tcttccacgg
     1141 gctgcggaag ctcaccacgc tgcatatgcg ggccaacgcc atccagtttg tgcccgtgcg
     1201 catcttccag gactgccgca gcctcaagtt tctcgacatc ggatacaatc agctcaagag
     1261 tctggcgcgc aactctttcg ccggcttgtt taagctcacc gagctgcacc tcgagcacaa
     1321 cgacttggtc aaggtgaact tcgcccactt cccgcgcctc atctccctgc actcgctctg
     1381 cctgcggagg aacaaggtgg ccattgtggt cagctcgctg gactgggttt ggaacctgga
     1441 gaaaatggac ttgtcgggca acgagatcga gtacatggag ccccatgtgt tcgagaccgt
     1501 gccgcacctg cagtccctgc agctggactc caaccgcctc acctacatcg agccccggat
     1561 cctcaactct tggaagtccc tgacaagcat caccctggcc gggaacctgt gggattgcgg
     1621 gcgcaacgtg tgtgccctag cctcgtggct caacaacttc caggggcgct acgatggcaa
     1681 cttgcagtgc gccagcccgg agtacgcaca gggcgaggac gtcctggacg ccgtgtacgc
     1741 cttccacctg tgcgaggatg gggccgagcc caccagcggc cacctgctct cggccgtcac
     1801 caaccgcagt gatctggggc cccctgccag ctcggccacc acgctcgcgg acggcgggga
     1861 ggggcagcac gacggcacat tcgagcctgc caccgtggct cttccaggcg gcgagcacgc
     1921 cgagaacgcc gtgcagatcc acaaggtggt cacgggcacc atggccctca tcttctcctt
     1981 cctcatcgtg gtcctggtgc tctacgtgtc ctggaagtgt ttcccagcca gcctcaggca
     2041 gctcagacag tgctttgtca cgcagcgcag gaagcaaaag cagaaacaga ccatgcatca
     2101 gatggctgcc atgtctgccc aggaatacta cgttgattac aaaccgaacc acattgaggg
     2161 agccctggtg atcatcaacg agtatggctc gtgtacctgc caccagcagc ccgcgaggga
     2221 atgcgaggtg tgattgtccc agtggctctc aacccatgcg ctaccaaata cgcctgggca
     2281 gccgggacgg gccggcgggc accaggctgg ggtctccttg tctgtgctct gatatgctcc
     2341 ttgactgaaa ctttaagggg atctctccca gagacttgac attttagctt tattgtgtct
     2401 taaaaacaaa agcgaattaa aacacaacaa aaaaccccac cccacaacct tcaggacagt
     2461 ctatcttaaa tttcatatga gaactccttc ctccctttga agatctgtcc atattcagga
     2521 atctgagagt gtaaaaaagt tctgtcaaca gattcagtcc ccagtcctcc ttctctgagc
     2581 agacctctca tccgcagcat atatctgcta gatcttctaa gagctgaaat ggagacttct
     2641 ggaagaaggt gggaaagaaa tccatctcgg cttaattaac catttatcgc atcatattac
     2701 tcccatctta aaagtgcacg cgttgttttt ctgaaccctc acacaaaggc tactactgtg
     2761 gtcccatatc tgtcggccca tgagaaacag tgttcttgga cctcacagcc aagcagcact
     2821 gaactgcagc aaaatccagc aacacattca gcagcgagca gcctgctgag ctccactggt
     2881 ttatccgggg ccaccaaccc caaagaactg ggatgaaagc agatgtgaga gaggaaaagg
     2941 atctgttttt gttttatttt ctaccaggcc cagctctttg tggggggaat aaaaaagaag
     3001 aaaaatcgag ctccaagctg gtgccctgcc aagcttcctc ccctcccttc ctagtccaag
     3061 cactccaccg tctgtgcaga ctgcataaca gcaatttctg gaaacaggct gaagaatctg
     3121 ggccagtcca gaggcagtgg attcctggtt tatgtgtggt ggggttttta ggaattttat
     3181 ttttcacctt aattctttca acaactgcca gctgtttgaa gcacatctgt aataaacagc
     3241 ttctgtttgt aaaatgagac tgaagttatc ctctccagag aaattcctga atcttctctg
     3301 tagttcaatg ccttcactga cagtttggct caaaaagtat gagtgtggta aatattaaag
     3361 aatgttaata caagtgtaa
//
