LOCUS       NM_001320038            1521 bp    mRNA    linear   PRI 12-SEP-2020
DEFINITION  Homo sapiens uncharacterized LOC730098 (LOC730098), transcript
            variant 2, mRNA.
ACCESSION   NM_001320038
VERSION     NM_001320038.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, Yamashita R,
            Yamamoto J, Sekine M, Tsuritani K, Wakaguri H, Ishii S, Sugiyama T,
            Saito K, Isono Y, Irie R, Kushida N, Yoneyama T, Otsuka R, Kanda K,
            Yokoi T, Kondo H, Wagatsuma M, Murakawa K, Ishida S, Ishibashi T,
            Takahashi-Fujii A, Tanase T, Nagai K, Kikuchi H, Nakai K, Isogai T
            and Sugano S.
  TITLE     Diversification of transcriptional modulation: large-scale
            identification and characterization of putative alternative
            promoters of human genes
  JOURNAL   Genome Res. 16 (1), 55-65 (2006)
   PUBMED   16344560
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   3  (bases 1 to 1521)
  AUTHORS   Bonaldo MF, Lennon G and Soares MB.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res. 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC066358.1, AK296005.1 and AL162231.20.
            
            On May 17, 2019 this sequence version replaced NM_001320038.1.
            
            Transcript Variant: This variant (2) retains an intron in the 5'
            UTR compared to variant 1. Both variants 1 and 2 encode the same
            protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK296005.1, SRR3476690.791966.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2151119, SAMEA2155550
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000421828.7/ ENSP00000457701.1
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-656               BC066358.1         5-660
            657-1008            AK296005.1         628-979
            1009-1193           AL162231.20        20021-20205         c
            1194-1521           AK296005.1         1165-1492
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9p13.3"
     gene            1..1521
                     /gene="LOC730098"
                     /note="uncharacterized LOC730098"
                     /db_xref="GeneID:730098"
     exon            1..433
                     /gene="LOC730098"
                     /inference="alignment:Splign:2.1.0"
     CDS             387..650
                     /gene="LOC730098"
                     /codon_start=1
                     /product="uncharacterized protein LOC730098"
                     /protein_id="NP_001306967.1"
                     /db_xref="CCDS:CCDS83357.1"
                     /db_xref="GeneID:730098"
                     /translation="MSGMRRYEVALEAEEEIYWGCFYFFPWLRMWRRERSSAHPGEQK
                     LEPLRGLMSCLSSGLGPTPQRSGRGFPRRSPTAAAQPASALKI"
     exon            434..493
                     /gene="LOC730098"
                     /inference="alignment:Splign:2.1.0"
     exon            494..1521
                     /gene="LOC730098"
                     /inference="alignment:Splign:2.1.0"
     regulatory      638..643
                     /regulatory_class="polyA_signal_sequence"
                     /gene="LOC730098"
                     /note="hexamer: ATTAAA"
     polyA_site      656
                     /gene="LOC730098"
                     /note="major polyA site"
ORIGIN      
        1 gtttccgggg tggagccagg gagggcggga gtttaggctg cgctgacccc tctcagcccc
       61 ccctccaggt gaccccagcc cctgaaaatc ctcacccagg gccccaaatc tcccagcccc
      121 atgaccgcca aacctctcgc cctggccccc taaatgcccc aggccccgga gatgaccggc
      181 ctcctcaccc cttaacttcc agtgcctccc aaatctccaa gcccaccctg tcccgtggtg
      241 gcaactgagg cttctcgggg gcatcagcct cagattacct gagaactggg cagcctcgtc
      301 ctgagaatga cggagaaggg gacctggggc tagggaatcc ctgattcaat catgccgctc
      361 cccaggagac gttcggagcc caggacatgt cgggaatgag gagatacgag gtggcgctgg
      421 aggcggagga ggagatctac tggggctgtt tctacttttt cccctggctt cgcatgtggc
      481 ggagggagcg gagctcggcg caccccgggg agcagaagct ggagcctctg cgaggcctga
      541 tgagctgtct gtccagcggc ctgggtccta ctccccagcg ctcgggtcgt ggcttccccc
      601 gccgcagccc caccgccgct gcccagccag ccagtgcatt aaagatttaa accgaagccc
      661 accgtactga cctcctgact ctgccgccgc tgtcgccatt cgagccgagc gcccctcccc
      721 acacgggctc tgttccgtac tgacagggcg tccctccctg gaagggtgcc cttccacgtc
      781 aaagcccctc atcagtgtca ggcctcctgt tactatcaat ggctgtctcc cccaatccca
      841 acccccaaaa acccatactg tgagtcgcct atatgaagag aactaaataa tcctgcctgt
      901 tactcccttc ctcggagcga ggactttgcc agctgtctga agaatcttct ctgctgggag
      961 tatatctaaa acattttaag cagaggtgta ggatgcaggc tgtaaatggt aagaggggga
     1021 gattcctaga agctgcctgc cacagaggag cgacttgggt tggcgacctt tcctacagtt
     1081 cataccccaa cttttggctc ctccagtctg atcccaagtt tagagatcct tggcatcagc
     1141 ctacctagaa gttcttgctc cctccctagg agagtccaag ggccactgct ctttgccgcc
     1201 cccttctgtc acccaatcag cctgggaccc actaactcct caagtggtga gaatcaggga
     1261 ctgctatgtg ggcctgcctt cagttaggga ctggacccag caccagaaag ggcaccacaa
     1321 gattaagtta aagaaagaga tggcccagtt tctggctggg gccaaagcta cagcagattg
     1381 tggctgggga gaagacttgg tcttaaaggg gagagatggg tgcacaccca aaagcatttg
     1441 ttttctgcct tccgaagact tctggaccga caagcccagg gaagaccaga aagtatgtag
     1501 cgcacagcca agtgatgaag a
//
