LOCUS       XM_047449439            2445 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens collagen alpha-1(I) chain-like
            (LOC124906255), transcript variant X1, mRNA.
ACCESSION   XM_047449439
VERSION     XM_047449439.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000003.12) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 14% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2445
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="3"
     gene            1..2445
                     /gene="LOC124906255"
                     /note="collagen alpha-1(I) chain-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 long SRA reads, and 93% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:124906255"
     CDS             1..933
                     /gene="LOC124906255"
                     /codon_start=1
                     /product="translation initiation factor IF-2-like"
                     /protein_id="XP_047305395.1"
                     /db_xref="GeneID:124906255"
                     /translation="MTISGFSVAGSSAAAVPLPRAGGRRGQGGDPECGPRSCFEREVE
                     RRLSERPPPPRDADPGGPRGASPRARARRARGSATHRGRRRRAGRARRFPLLRPCPWD
                     RRACRAGRASWNPGIRAAAASEPLWRRPGSARRGRRGPDTVTRRRGAGSSGRAWPCCP
                     SAFRRRRRASGPSGLQGGRRVDGEPAPGGQIPSRDGAPGPRELRRDARAPVSHPVASP
                     LRAALRAGWRDAVPHRRGKTAPPRPGRWSFPPAPPARRCPLAGERCRGPGEAAGPDLP
                     AGLALPRRRRGSAAGSPSVPHSTPHTKNDDFIKM"
     polyA_site      2445
                     /gene="LOC124906255"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgaccattt cggggttctc cgtggcgggg agctccgccg ccgccgtccc ccttccacgc
       61 gcgggaggtc ggcgagggca gggcggggac ccggagtgcg gcccccggtc ctgcttcgaa
      121 agggaagtcg agaggaggct gagcgaacgg ccgccacccc cgcgggacgc tgacccgggc
      181 ggaccccgag gggcctctcc ccgcgccaga gcgcggcgtg cgcggggaag cgcgacccac
      241 cggggtcggc gacggcgcgc ggggcgggcg cggcggttcc ctctcctccg cccgtgcccg
      301 tgggatcggc gggcttgtcg ggctgggaga gcctcgtgga acccgggcat ccgggcagca
      361 gcggcctccg agccactgtg gaggcgcccg gggtcggcac ggcgaggccg acggggacct
      421 gacacggtca cgcggcgccg gggagcaggt tcgagtggcc gggcgtggcc gtgctgcccc
      481 tccgcgttcc gcaggcggcg acgggcgagc ggccctagcg ggctgcaggg aggacgccgc
      541 gtggacggag agccggcgcc cgggggccag atcccctccc gggacggggc gccaggtccc
      601 cgcgagctgc ggcgcgacgc gcgggcaccc gtgtcccacc cggtggcctc gccgctgcgg
      661 gctgcgctga gagcggggtg gcgcgacgcg gtccctcacc gcagggggaa gacggcacca
      721 ccgcgtcccg gccgctggag cttcccgccc gcgccgccgg cccgacgctg ccccctggcg
      781 ggagagcgct gcaggggccc cggcgaggcc gcaggacccg acctccccgc cggcctcgca
      841 ctcccgcgcc gccgccgagg gtcggcagcc ggatcgccct ccgtgcccca tagcacccct
      901 cacactaaaa acgacgactt tattaagatg tgagatacag ggtctctgtc gcccaggctg
      961 gagtgcggtg gcacgatctc ggctcaccgc agccttgaac ttctaggctc cagcgatcct
     1021 cctgcctcag cctcccgagc agctgggacc acaggccccg ccaccatgcc cggctcagtt
     1081 ccatgacttc tgacacgcga aaccaccagg ctagtctccc cccgagttca agaagtcctc
     1141 tcctcccaaa agtaccctcc tgcccctctg cagctaaccc ctcacctccc ctccgccctg
     1201 gttccagaca actgctcctc tgatttctgt cactgccctt tgcctctctc gcaattgcat
     1261 gcaaggagaa ccattcaccg tgtggtcttt tgtgcctggc tttcttcgct tggcaccatg
     1321 cagctgagcg tcgcccgtgt ggcgtgtgtg tgttgtattt tcctctacct tggtcttgag
     1381 acctccctgg agagccactg taaaggccaa ctctgccctg acagggctcc tgggatttgg
     1441 gcgtgggtgt ttgccgtggg cctttcatgg ggcacctctg tatcctggct gacctgtgac
     1501 cgggtgtccc tctcccagga gacatattta tcctggcaga tctccttgtg cttcttgtct
     1561 gacctgtatc tagtttattc ctaccaagat agctgctctc tagggaaagc cctgaccagg
     1621 gaaaacgtta cgtttgagcg tctcagtcag gcatgacaca gagcaggcaa cacaacgaaa
     1681 cacaggaact aacagaagtg gtcctattac ttacagatcc acaggggaag agggcacact
     1741 gagggccgtc gggaatgtct tggggacact gtacacaatc gttgtggggg tggggggagc
     1801 cagagagaga cggacctgtg ggctgaggct tttattggag tgcagggcat tactcaagca
     1861 gttttcccaa ggggagctct aattggttca cctagaggag cgaactggag tcctgtgggg
     1921 ccaccttgtg acttaggggt ggtcactgag acatatctgc atagtccatg cagggtgtgg
     1981 gcgtcagtgg ggtgagtcta gttggttgta tgtatacatc ccacaaggag gcagttacca
     2041 ggaggtggct acctaggacc agatatctgg acggaatgtg ttgagatact gtttccagca
     2101 gagagctgga aactgtatcc aaggtgacta agccctgctt ctagtatgaa attgttaacc
     2161 ctatattcaa aatggatact gaagcaacct aaaatttcag gtatttacta aagtgtgtat
     2221 caagttccct ccttaccact ggtgagtagt attccattgt atggatatgc cacaggctgt
     2281 ttgtccattt ggacattgat ggatggacta aagttggcca agctgggctg gtggggaggc
     2341 accctctcag gaccccaaag gaggatgcgg ggttgttgtt ggatgtctgg gttgtttcca
     2401 gtttgaaggc attgtgaata aaactgactt gagccttcct agaaa
//
