LOCUS       XM_047446892            3740 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens collagen alpha-2(I) chain-like
            (LOC124905962), transcript variant X1, mRNA.
ACCESSION   XM_047446892
VERSION     XM_047446892.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000002.12) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 8% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3740
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="2"
     gene            1..3740
                     /gene="LOC124905962"
                     /note="collagen alpha-2(I) chain-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 2 long SRA reads, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:124905962"
     CDS             1..1248
                     /gene="LOC124905962"
                     /codon_start=1
                     /product="collagen alpha-2(I) chain-like isoform X1"
                     /protein_id="XP_047302848.1"
                     /db_xref="GeneID:124905962"
                     /translation="MTAESSRPTTLMTAESSRPTTLMMALSLGGTAAHSLWLDEVPVG
                     LPGGVAARSLWLDEVHVGLPGGVAARGLWLDEVHVGLPGGIAAHGLWLDEVHVGLPGG
                     VAARGLWLDEVHVGLPGGVAARGLWLDEVHVGLPGGVAARGLWLDEVHVGLPGGVAAH
                     GLWLDEVHVGLPGGVAARGLWLDEVHVGLPGGVAARGLWLDEVHVGLPGGVAARGLWL
                     DEVHVGLPGGVAARGLWLDEVHVGLPGGVAARGLWLDEVHVGLPGGVAARGLWLDEVH
                     VGLPGGVAARGLWLDEVHVGLPGGVAARGLWLDEVHVGLPGGVAARGLWLDEVHVGLP
                     GGVAARGLWLDEVHVGLPGGVAARGLWLDEVHVGLPGGVAARGLWLDEVHVGLPGGVA
                     ARGLWLDEVHVGFAVKRSVQKRG"
     polyA_site      3740
                     /gene="LOC124905962"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgacggcag aaagctcccg ccccaccacg ctgatgacgg cagaaagctc ccgccccacc
       61 acgctgatga tggcactctc gttgggtggc actgctgcgc acagcctgtg gctagacgag
      121 gttcccgtgg gtttgcctgg aggcgttgct gcacgcagcc tgtggctaga cgaggttcac
      181 gtgggtttgc ctggaggcgt tgctgcgcgc ggcctgtggc tagacgaggt tcacgtgggt
      241 ttgcctggag gcattgctgc acacggcctg tggctagacg aggttcacgt gggtttgcct
      301 ggaggcgttg ctgcgcgcgg cctgtggcta gacgaggttc acgtgggttt gcctggaggc
      361 gttgctgcgc gcggcctgtg gctggacgag gttcacgtgg gtttgcctgg aggcgttgct
      421 gcgcgcggcc tgtggctaga cgaggttcac gtgggtttac ctggaggcgt tgctgcgcac
      481 ggcctgtggc tggacgaggt tcacgtgggt ttgcctggag gcgttgctgc gcgcggcctg
      541 tggctagacg aggttcacgt gggtttgcct ggaggcgttg ctgcgcgcgg cctgtggcta
      601 gacgaggttc acgtgggttt gcctggaggc gttgctgcgc gcggcctgtg gctagacgag
      661 gttcacgtgg gtttgcctgg aggcgttgct gcgcgcggcc tgtggctaga cgaggttcac
      721 gtgggtttgc ctggaggcgt tgctgcgcgc ggcctgtggc tagacgaggt tcacgtgggt
      781 ttgcctggag gcgttgctgc gcgcggcctg tggctagacg aggttcacgt gggtttgcct
      841 ggaggcgttg ctgcgcgcgg cctgtggcta gacgaggttc acgtgggttt gcctggaggc
      901 gttgctgcgc gcggcctgtg gctggacgag gttcacgtgg gtttgcctgg aggcgttgct
      961 gcgcgcggcc tgtggctgga cgaggttcac gtgggtttgc ctggaggcgt tgctgcgcgc
     1021 ggcctgtggc tggacgaggt tcacgtgggt ttgcctggag gcgttgctgc gcgcggcctg
     1081 tggctagacg aggttcacgt gggtttgcct ggaggcgttg ctgcgcgcgg cctgtggctg
     1141 gacgaggttc acgtgggttt acctggaggc gttgctgcgc gcggcctgtg gctggacgag
     1201 gttcacgtgg gttttgctgt gaagaggtct gtccagaagc gggggtagag aaagggtgat
     1261 ttttatcgca gaacaagtca tgttgtttta atctcaccag aagtttcatc taatttgaaa
     1321 tagaaaaaga ccaagcacta cagattgaag ctgggtgcct gatggacacc tgctcgtgtg
     1381 cttctctgta agtatttgca ttgtcgcagc tgcaagcacc catttcgctg agaatcactg
     1441 ttgcctccat ggggtcctgt cctatggacg acccctgtct agttgggaac ttggtgccag
     1501 gagctcaact tgctccaatg cttcccatcc tactaagttc tacgctgact acagtggtag
     1561 gtaacgtctg ttttcctgca gtgcttaaat attgtttcta cctccacctt cggcagctat
     1621 gtggcagaca tttaatcatt gttaggcaaa aaagacctaa acgtactctg ttagctactg
     1681 caccctgcct ggattcccca ggccacatgt cttagttagc cccacacagc ttcagatatt
     1741 gttattgctt ctatccattc tgctaaactg agccatggtt aataaaagat gagaattggc
     1801 aatttccaag tttctaagag tttaaagtta taggaaataa aagacatgat gtattcctca
     1861 gagtaggctc actattgtaa caacgcctcc gaattttagt agcttaccaa aataagaacg
     1921 tattgttcac ttgcatgact gtcaaaccta ggccagatga gggctgtgct ccacaacacc
     1981 gcccaggaat ctgggatcct cccctgggct ccagtagctc catggacatc tgcaggtaga
     2041 atataaacaa ggaagctggg aggaactggt gagatttcag aggaggccta gaggtggtgg
     2101 ccatcactct ccctcccagt ctcctggcca ggacttggtc acacagctgc acctcacagc
     2161 gaggggctgg ggaacgcggc ctcaccccgt gtccaggaag aggagtgacc tgccatggtg
     2221 agaatctccg ctcctgaaga gcacatgatt agtcatttac acgtcctgat gttgttgctc
     2281 agggtctcct cctaccaggg gagacagtgg aaaactgtgt gcattgctca cagtgaggaa
     2341 gctggttcct tggctggtct gtgggtcaca ttgctcatct tcatggggac agcggccact
     2401 cttcaccatg cttcctgttg ctggattgca atgggagcca tgccatcgat gctttgggca
     2461 aaatagctca tgtatggctc ctcgtcagct gcatgcagtg gcacagatgc accatgaagc
     2521 ttgcagttgg gtgtctgcac ctctcaaaac catttccagc tggacaagca ggcctcttgg
     2581 tgctaatgca cctgtgaaag gcaaagaccc tctcatcatt ccatgagcca tatgctggct
     2641 ctatgttttt atgcctgtct cccataacag gtgacattgt tgagaatgag tagcgggggg
     2701 tgtccgatag ctgttacttt gaagtaaaag gaattcactg atccagctgc agtgggtccc
     2761 taaagcaagg gctgcttaac acgtatactc aggttgcatg atggccgtgg agtacactgg
     2821 actcagcacc aggaccccat ctctcatcac cagctgtgtg tacgccttgg tgagctcctt
     2881 aaatctaaac acgtgagtat ccttatttgt caaaagagga ttcaaatttt aaccctgcat
     2941 aaccaaaaat acaggaatta cttaatgaag gggttcttga gaagcgataa actgaaaggt
     3001 aagtcaaagc cccatggcaa atgcaaatgg cttgaaaatg caggaaatgc tttcatcctg
     3061 gaacatttgc tgttctaccc aagtcaggtc tgtgtctctg gaggtgcaca cggagctgtc
     3121 cctggtggca gcctctgcca aggactgtgt ggccccgggg gcagcctctg ctgagtattg
     3181 tgtgttcctg gtggcagcct ctgctgagtg ttgtgtgttc ctggtggcag cctctgccaa
     3241 ggactgtgtg gccgcggggg cagcttctgc cgagtgttgt gtgttcctgg tggcagcctc
     3301 tgctgagtgt tgtattgctg gtggcagctt ctgccgacgg ctgcgtggcc caagtgtgcg
     3361 tcctgccttt tcctgacttc ctctctctac ttcccactct cacccggcac atgataaaat
     3421 gtaatctaca tgaatattag gatttggatt tctatctgga cacgtgattt acctattaat
     3481 cagacaccaa ccacatgaat gattattaga ggaatattta acaaaagcta cataaaaaca
     3541 gtttttgaaa ctatttggac ttcacttctc ataacattct taaaaaccaa agttcagtgt
     3601 gtcttccaaa atgaagaaaa attaccctgt tttaccaatg gttttgcgtc gctaatatca
     3661 taaaatgaag gatgagtttt caagcctgaa agacagtgta tttactaaac aatttcttaa
     3721 taaattcatt tattcatgca
//
