LOCUS       XM_047419634            4416 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens collagen alpha-1(III) chain (LOC124900217),
            transcript variant X2, mRNA.
ACCESSION   XM_047419634
VERSION     XM_047419634.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4416
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..4416
                     /gene="LOC124900217"
                     /note="collagen alpha-1(III) chain; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 37 long SRA reads, and 89% coverage of the annotated
                     genomic feature by RNAseq alignments, including 126
                     samples with support for all annotated introns"
                     /db_xref="GeneID:124900217"
     CDS             38..967
                     /gene="LOC124900217"
                     /codon_start=1
                     /product="collagen alpha-1(III) chain"
                     /protein_id="XP_047275590.1"
                     /db_xref="GeneID:124900217"
                     /translation="MAGAGRRRGIPQSASRRRGAPACIQHKGSPGQRRGAEGSLAAPA
                     RRGEAGRAGRTDGRTGARASGHPGGAGQEWGPSRGCLAPGGVPPPAGLRGPRGERKFQ
                     GQLWAAAAAAARGAASPAEVCRRAGKRRLLLPSLRIGEGGGSEGSAADTGREGGEAKE
                     RKGGGEKGRPGNHLRLPRLPRPAPAASGGPGASAHPVGAGAGAQSRDAHVAAPTPLGS
                     PRAVGQSPRPPPGPGCSAVRAPGGRRRQDGRGQLRSLCSPAPLPTALRSQERPAPRGT
                     PRAPRGPPALSYFPSGRWPTLLGRPGGPQIERL"
ORIGIN      
        1 cagccgcgcg ggctccaggg tcctctggtg gaagggcatg gcgggggcgg gccggcggcg
       61 cgggatccct cagtctgcct cccgtcggcg cggggcgcca gcctgcatcc aacacaaagg
      121 aagtcccggg cagcggcggg gcgccgaggg aagcctggcg gcccctgccc gcaggggaga
      181 ggccgggcgg gcaggaagga cggacggacg gacgggcgcg cgggcgagcg ggcacccggg
      241 cggcgcgggg caggaatggg gtccgagccg tggctgcctg gcgcccggcg gcgttcctcc
      301 acccgcaggg cttcgcgggc cgcgcggcga gaggaagttc caggggcagc tctgggcggc
      361 ggcggccgcg gcggcgaggg gagccgcgag tcccgctgaa gtttgcaggc gggcaggaaa
      421 gcgccggctg ctccttccct ccctccggat tggagaggga ggaggaagcg agggaagtgc
      481 cgccgacacc gggcgagagg gaggggaggc gaaagaaagg aaagggggag gagaaaaggg
      541 ccggcccggg aaccacctgc ggctcccgcg gctgccgcgc ccagcgcccg cagccagtgg
      601 cggccccggc gcctcagcgc accctgtcgg ggcgggtgcg ggcgcacagt cccgggacgc
      661 ccacgtcgcc gccccaactc cccttggcag cccccgggcg gtggggcaga gccctcgccc
      721 gccccccggg ccggggtgca gcgcagtgcg ggcgccggga gggcggaggc gccaggacgg
      781 ccgcggccag ctccgctcgc tctgctcacc tgcgcccctg cccacggcgc tccgcagtca
      841 ggagcgcccc gccccgcggg gaacgccccg ggcccctcgg ggtccccctg ctctctccta
      901 cttcccttct ggaaggtggc caacacttct gggccgcccg ggtggacctc aaatagaacg
      961 tctttaaatg tccggtggcc aagggttctg tagccgacta ggagtcagcg tccgactcgg
     1021 aacaactcaa gacctctttt cagggggcgt ccagtgagtt tttttcagca aggtgactcc
     1081 ccctgtggct gcctgctact acagctggaa aggtccaagc tgaaatgtga ctaatctgag
     1141 tttcttccac caagcatgtt agttaggggt ggaggactag aacctagaac cctgaattcg
     1201 agcctggaag atatgtaagc cacatgctat tgagatcgtg gtcatgggac acccgctaac
     1261 acaaaccttc tggtaggaag tttttgagaa gactgggtcc aatatcccca agctaaaatc
     1321 ccactggccc atcgctgtgt ttgctcagaa aaggaatctg ggttctttgg tttctgcttt
     1381 ccagttgacc ctggttgctc ctctgtttta cggcattttg ggagtcggtc tcccagagca
     1441 gcgctgattg taatgagaag cgcgttccct ctctggggga caggagcagt gggagaaaaa
     1501 tgggcctggg aaagagctcc tccaaataaa acttattaga cagatacggg ttatggtgtt
     1561 ggtggtggtg gtggtggtgt tttggtcttt atcctgttgt acagcgcctc attttttaca
     1621 atgtgggcca gtaactattt cgtatcacct actctgacca ccttcagggt tgttatgagg
     1681 ctcaaaggaa cggctgctgt gaaaaaacat gctttgcaat ttatgaagca ctggataaac
     1741 atcaggaacg gtataaaagc atgctgctta ctcaagaaat actagttgag tgcctgtgtg
     1801 ttgggcactg gctagagata aggtaatgtg caaagctggc tctgtccctg ccatcatgag
     1861 actctcgtgt agtggaccat gcataacatt tttaaattat atacaatatg gccgggcgcc
     1921 gtggctcacg cctgtaatcc cagcactttg ggaggccgag gagggcggat cgcctgaggt
     1981 caggagcttg agaccagcct ggccaacatg gtgaaacccc gtctctacta aaaatacaac
     2041 aattggccgg gcgtggtggt gggggcctgt aatcccagct actctggagg ctgaggcagg
     2101 agaatcgctt gaacccggga ggcagaggtt gcagtgagcc gagatcatgc cgttgcactc
     2161 cagcctgggc aacagagcca gactctgtct caaaaaaaaa aaaaaattac atacaatata
     2221 atttgcctat ttaaagtgta taactcaatg ctttttagta tatttacaat gttgtgcaaa
     2281 catcaccata atcactttta gaacatttta atcacaccag tctcaaaaaa acaattctct
     2341 ttagtactca gttccctccc tcctaaacca tcactagcca attgcaacca ctcatgtgtc
     2401 tatggatttg cccattgtag aggtttcata tcaatgaaat catacatgtg tgattgtttg
     2461 tgactggctt ctttcactta gtgtgatgtt ttcaaagttt atccatggag tagcatggat
     2521 cagttttgat tcttttttta aggctgcata atatcccatt gtttggatat gccacatttt
     2581 gtttatccat tcatcagtta atggacattt gggtgtccac tttttggcta ttatgattaa
     2641 tgctgctgtg aacatgtgtg tacaagtttt tgtgttaacg tgtgttttca tttctcttgg
     2701 gtacataccg aggagtggaa ttgatgagtc atggtgccaa tctgttttcc gaagtgactg
     2761 caccatttta cctcccagcc agcaatgtat gagggttcca gtttcttcac atcctcggca
     2821 acactaattt ttatgtcttt tttattacag ccattctagt gggtataata cctcattgtg
     2881 gattcgattt gcattttcct gatagctagt gataatgagc atcttttcat gattttatca
     2941 gctacctgtt tatcttcttt ggaaaaagat aacattgtag aaatgtctgt tcagattctt
     3001 ggccattatt aaatcaaatt tttgtccatt tcttatcaag atgtaataga tccttgaata
     3061 ttctagatac aagtccctta ggtgtaacat ttacttcctg attgctttaa cagtctattg
     3121 tgggtttttt gttttttgtt ttttgttttg agatggagtc tcgctctgtc acccaggctg
     3181 gagtgcaatg gcaggatctt ggctcactgc aacctccgcc tcctgggttc aagcgattct
     3241 cctgcctcag cctcccgtgt agctgggatt acaggtgcct gccaccacgc ccagctaatt
     3301 ttgtattttt agtagagatg gatttcacca tgttggcccg gctggtgttg aactcctgac
     3361 ctcaggtgat ccacccacct cagcttctca aagtgctggg attacaagcg tgagccacag
     3421 cacccggccc agcattgttc tttagtttat tccctcttct attcccttga gactttccca
     3481 ttggtttgaa aagaattatg atttagccac ataaactaat aaaaagagag caagaatatt
     3541 tttgtaaatt tgtaatcctg gggcaatatc aatagaattt tttttataaa atgaatgatt
     3601 tcactactcc agaagtggaa tgtaaactct atacataacc agaacatgga attaacagga
     3661 ctcatgggtg tatccataaa agcaactgaa tttttagtct tctgctgtta ataatctgtt
     3721 ccatgaggat agttcttcct cttccacaga atgaaactca ggcagtccta taactttttt
     3781 attctctcag gtaatagaaa atcctgttac tttaagagga aaaaccctgc tcttaattca
     3841 gtaattcaaa tcttgtcccc ttccccaaca gggtctccta tggacagaag tgcgggcaag
     3901 gagctttgtt cctccccgat gtcaccctcc cacagcccac ttgctagcag gcaagagagg
     3961 ggtggaggcc ggcagtaagg catgtactga actggacctc tggtggaatg ggtcacccac
     4021 gctgggcttg actcttacca tcagggtcct gccaaccctt cagtgagact ttttccgaag
     4081 aatccctttt aaaatgacct caagctgacc ttcctgatgc agattccaca tatggtatct
     4141 gagactcaca cagtgtggtt ggaagatagc acagtgacct cccaggcaca gccctctgcc
     4201 agccctccac tggctgccct aggatgctgg ccttcctccg atgggagtcg ggcccagtct
     4261 gctgtgagcc aggagaagcc agcaagctcc ctgcgaggcc tggaggagcc cttctcactc
     4321 agcttggtgt tcgatgccag tgcccccgcc cattgtgggg tgagggtggg actctcagca
     4381 cagccctgtc caaataaatc ctctaaagcc ctcttc
//
