LOCUS       XM_047422523            6554 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens collagen alpha-1(I) chain-like
            (LOC112268016), transcript variant X2, mRNA.
ACCESSION   XM_047422523
VERSION     XM_047422523.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000008.11) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6554
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="8"
     gene            1..6554
                     /gene="LOC112268016"
                     /note="collagen alpha-1(I) chain-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 27 long SRA reads, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:112268016"
     CDS             268..1083
                     /gene="LOC112268016"
                     /codon_start=1
                     /product="collagen alpha-1(I) chain-like"
                     /protein_id="XP_047278479.1"
                     /db_xref="GeneID:112268016"
                     /translation="MPRGPAAPRPPAGPAASMGRCAPNAGSGPEAERSAAPSAGPPGP
                     PLRPLGADPCVSPGSDPASPSSRPASRAQALRGPPKSRSPARLAARPQQPSAQKGHAA
                     HGRVVGFGCAEREVPESAVARLCPRGCLRGAVPFLPRPRGPELLAGSEISADPVICCP
                     RGSGLATPRTLSGKWLTDEGRASSGCLNPNRCKFTPREAGMKARDRKRGGGGGGGGGA
                     QRRPLPPGPPRRLCQLSSEQVSDTDFPGVDSQPLPLGPRASPTRTRILETFNL"
     polyA_site      6554
                     /gene="LOC112268016"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcttcacacc tttcccgccc ttaagtatgt gtacgttggg tgcagaaccg tttggttttc
       61 ccgaggggta ggcagaattt ccaaccccac gagctgctcc ctctttccgc aaacctccta
      121 accccggggt ttttccataa atgtgtttac ttcgtccacg ccagcctgcg aagttccaaa
      181 atggagtctg ggccacgccg gcgttctggg cacgactacg gtctcttgaa aaggtaggga
      241 agagtcggcg agctccagct ttgggggatg ccgcgtggcc cggccgcgcc taggccgcct
      301 gctggccctg ccgcctcgat gggcaggtgc gcgccgaacg cggggagcgg cccggaggct
      361 gagcgcagcg cagcaccgtc cgcgggccct cctgggccac ctctgcgccc actgggggct
      421 gacccttgtg tttctccagg ctcagaccca gccagcccct cgtcccggcc ggcgtctagg
      481 gcgcaggcat tgcggggccc acccaagagc aggtcacccg ccaggctcgc cgcccgcccc
      541 cagcagccct cggcgcagaa aggccacgcg gcccacgggc gagttgtggg tttcgggtgt
      601 gcggagaggg aagtcccgga gtctgcagtg gcccggctgt gcccccgagg ctgtctccgc
      661 ggagccgttc cattcctgcc gcggccccgg ggacctgagc tgctggctgg ctctgaaatt
      721 tccgctgacc cggtcatctg ctgtcctcgc ggctctggac ttgcgacacc aaggacgctc
      781 tcagggaaat ggctaactga cgaggggcgc gcgagcagcg gctgcctgaa ccccaaccgc
      841 tgcaagttta cgccccggga ggccgggatg aaggccaggg acaggaaacg cggaggagga
      901 ggtggaggag gagggggcgc gcagcgcagg cccctgcccc ccggcccacc caggaggctc
      961 tgccagctaa gcagcgagca ggtgtcagac acagacttcc ctggagttga ctctcagcct
     1021 ctcccactcg gaccgcgcgc ctctcccact cggactcgga tcctcgaaac ttttaatctt
     1081 taaagaatac aatgtgaaaa ccttatcttt ttccagggat cccagccact acctccgggg
     1141 actcgcctcc cttctcctca gccttccact gcctctgcgg ggcggggacc ttttgcattt
     1201 gaacttcccg cactgttggc cgtttttcgc cagagcctgg aggagtaggg agcttggctc
     1261 tgctcagggt gcgtgcaccc tggccctgga gtagcaagga cgcctgggga acccagagga
     1321 ggattgcgtg tactaggccg agtcgagggt gcggagacaa gggcaaaagg ctaagaattt
     1381 tatcttttaa aacagcgcgt cagcgcccgt gctctcagca gggctgaggt gggaaagcgc
     1441 agccgcgggc tgcagtccgc agccggcggg aagggccgca gcgccccctg gaggcaccgg
     1501 ccgagctctg cgtggcgcgg gctgaggggg cggccacacc ggtggtgggc tccgctgcgt
     1561 gagggcttgg ccaacagctg ccccgccggc ccagcggctc cctgtacctg ggcccgagcc
     1621 cctttgctgc agagaaagag tcgcgtgtgc ggtaggggtc ctgtggagag ggcctgggcc
     1681 tattctcagg gccaataagc ttctccacac ccaccgtcgg gtcctttgtg ggagccccac
     1741 atggtgtccc ccaccccaga gccttttctc ctggtgggtt tctgagacgg atttttcgga
     1801 cccacgacgc cactccgggc tgccctgact tccccagagg aggagaaaga taccagttct
     1861 gaccccagcg cagggagttc gcaggcggtc gcgtgcgggg cggcgcagat tccaaggccg
     1921 gggaccttgt ccgggcggga gatgcagagg ggtttcccag gggaccgcgt gcagacaggc
     1981 tgccccactc ccacggatgg cgcgggggcc ttcccgcgtc tgcgggagct gagggtcgtt
     2041 cctcactgca ggaaccccgc cacccggaat cgggccgggc cagccagccg caggcaccct
     2101 tccggccacc agcctgcgag gcactgagtc acagggaagg ggagctcagt gggaaggccg
     2161 agcacggggt ctcagggcaa gttgcgtggc cgtggccgtg gtggtctagc ctggggacag
     2221 aaacctcctt gagcccaggt ccagcccggg tttggatttc ccagctgagg ccctcggctg
     2281 ccgcagcggc ggagcccaga gccggcgcaa ggccacccag gccaccgtca gcccctcgct
     2341 agtcgcaaga tgcctccgcg accctggagc gtgaggatgg tcccggggga ggagcgggcg
     2401 gaagggcgca ccggctcctg cacaagctgg atacggctcg ggctccgcgg tctccaggcc
     2461 cgcgccgcac gccgaggggg taggagcggg ctcccggggc ggcgcgcggg cacagagcgt
     2521 gctttcgcct tccggtgact ccagggaagg ggatctcctg cagtttgcct cgtcggagag
     2581 agccaggcta acgcccatga tcccgcgtcc aaggctgctt cgaattcatg gtgcttttcg
     2641 aaccaagcgc ttcagtgtcc gtgacaagga agaccaggtt taccgatgac atcgcagtga
     2701 aggacaggcc ccagacacat ccggggagag gggggctctc cgcaccgggc ccctctggga
     2761 aggccccaac cgcccagggc gggactggcc cggctgtcgt gctcaacgtg ggtagacgat
     2821 ggatgacaga aaagaacatc ctcggaaaag actagggcac ggtctgcaaa cctatatttt
     2881 tattaggctt tcatattgtg tgtgtttttc aacgcacttg ccaacgctta aactttggga
     2941 aaattcaaac ggaaatcttg atttccgatg acctccgttc ctacgcggca gtgagttggc
     3001 tggagctgag cagcgctacc ctcccgtctc cagacttgtt tttaaaaggc cggctgaaga
     3061 ttgccttgga cgttccattt ctcactgcag atttcgtttc cctgggacgc tgggataggt
     3121 ccgagttacc ctctagagca gcggttctta aagtgtggtc caacagcatt cgcatcatct
     3181 ggaacttgtt agaaatgcaa actctctggc ctcacctact aagtcagaaa ctgggagtgg
     3241 ggcctggcaa tctgtgtttg agcaagccct ccaggtgatt ctgatgcatg gtaaagtttg
     3301 agaaccacta acctagatca gattgacatt ggggtccatc gcgggcgggc gcgatttatc
     3361 tttcccgcgc gtgctctctc tcctcctccg tccctacctc ttccttcttc cttcactcga
     3421 gagaatgcac gcataaacgc atctgcttta ggcagcttat tcattcattc actcgctcac
     3481 ttatttctca ttcatcagac tttccaaagg caccttcaag tacttggaaa cgagcttagg
     3541 atacctaggg gaacaaggct gtacccctcc ccgcaaggag tcggcataag atggtgggga
     3601 gagcaatgga gaaaaagtgc gggtgccttc tttcacggcc agttgttgtt aattagtatt
     3661 atctaatact agatctgact gatttccgga aatgtcgcac ctcattttac agtttctaac
     3721 tatttgtaac acttgcctgc cttccttgtc cgtgccgatg tcattctttt attttcatca
     3781 cattttaggg attctgtgtg tctactgcac accttccaca cacatcttga cacacattgc
     3841 ccacaccttg ccaaccctcc ctgcagtagg tcagagtgca tgacactggg ggtgagggag
     3901 tgtcaaaatc cgagggacca cgggtgggcc agggctcaga gtctctgtgc ccctggatta
     3961 ccctgaggct gggcaggagg gtctgaggac agctggaact gactcacatg ttcccctcac
     4021 ccacttggtg cacactggct cccaccctgc ttcctgctgc ctcaatctgc ctagctctcc
     4081 accttcaagt gcatccagca ttggcgtcct gatttgtcac cttaagatgg aatcaagtcc
     4141 ctttgctttt cttgagggag tataaaatag tctcccttct cccccaacta aaaatctgaa
     4201 tgacactggc actttctagt cttcttatgc caagtcaact tcccttatga ttgttcactt
     4261 tgcactttct ctctaggacc ttcacttgaa cttctctcct cggccaaaga gctgcctcca
     4321 ctggaccatt tgcttccctc caggattttc tagttttggg cagtgaacaa tagaaggcac
     4381 tttgcctccc caaaatcccg tctaactgga agcctcttgt catcatctat tttcaagttt
     4441 ttttagtttt tttttttaag ctttaatttt agtgagtcag tgcagggaag ccactgaaaa
     4501 cgcatataaa caaaaatgaa ttttcatact gaccatagtc ataaattgta caaaagtatt
     4561 catcatctcc actttgacaa agggttgcta ttttcaaatg accttttctt atggggattc
     4621 tcaaaatata agatgttaca gtggtcagga atgtggtaat ctctttacta ccagtgattc
     4681 tatttcttaa cagaattttg cttcccagtg cagatggttt gatatagtaa cattcaaagc
     4741 agccagccct taggaaatgc caaggccaat atttgaatgc agatacaagt tttaacaaag
     4801 gaaaatgtag tatatccttg tagctgtttg cctgtgaata ttcccctgga gggctaatac
     4861 actattcttg aatctaatcc aagtcaagcc aactctaaaa atcctgtgaa gtaccgacta
     4921 ataaggcaca tacaattcct tttcaacagt tttcttgagt gtctactatg taccagtgtg
     4981 aagaaacaag aaggcagagg cctgccaagg acggggaaca gcctccacaa aattttcagg
     5041 gacaaaaacg gaatctttgt cttcatgctt ctctgctttc ttcaaatgga ctctctgaac
     5101 ctgcaaacct ccatgaactc aagaaggcct gacaactctt tcagggtaca atgactggtt
     5161 ttagtgctat ggtttttctt ttctttcctt tttaatatca tgaatctaaa caaattccac
     5221 agggggaaaa aaataaaaag aactggctgg ctcaacgtaa aactattgat atggttccaa
     5281 attctctccc atcattgtca acgcgcgcgc gcgcgcgcgc gcgcacacac acacacacac
     5341 acacacacac gtttttgcaa aactgtaacc tgcatataca cagagtttta tgttctggtt
     5401 tttcacttca ctttattcca tatacacatt tccatgactt ggagggtacc ccagacttca
     5461 acacttttaa tagctaaagg gtattccatc ttatttatat ctctggttga gtgaccattc
     5521 acccttgtac tgtgggcttc tgggttgttc tagcctaggg agactccgtc gttctgtgct
     5581 taaggacatg cccgtggggt ttctcaggcc atgttcacaa gtagtgctag ggtttaggtt
     5641 tgtttgtttg ttttcatgat ttcttctgtc acagttttca ttttatgttt gcatgaggtt
     5701 atttctggat ttggttgctt taaaaaaata tcatattcat ctttgccaac tatcaatgca
     5761 tttgttctga aatgcaatca aggcctactc taaaaagcaa acaatacaag tgttgccacc
     5821 tgttgatgga aattttatta ctcttgtttc actggagctc tgatgaagaa cagcgtgaaa
     5881 ggaaaaaaga aactttatta taactcccac aaactcaatc cccagactta ttaacataat
     5941 atttgcatta ttactgttct ttttttattt cataccttct tctaacatgg gtcattgact
     6001 gtaagcaagt atacattttg cttcattaca atttgcttta gatatattta aaacctttcc
     6061 atttgatcaa ggctccacat ttctttttaa tttaaaagtt tcaaacatca aacattttga
     6121 aaccccatgg atggtgtata ccctagtgct ctacatgaaa tgaggtcagc aaacagccag
     6181 agtttgacaa tcctcagcgg aaccaatttt aactaatttc aaagaagaaa aaatagtttc
     6241 catatttcat aaaaagggtt tgctaataaa cataatagag gaaatagagg aagttacttt
     6301 tcttaaagct tcaagaatga atgagtatgt gtgcattaag aaaataagca aacagcatgt
     6361 actttgataa accataattt atataaatca aaggacaaga gccaagaatt acaatagttt
     6421 gtaaccaatg ccttataaat actatagttt aaatatgcaa gtaaataata aattctaaga
     6481 acagccctca ctcagcgatc agcagtgcct tgtatataat agaagagcaa taaataaact
     6541 tctgaatccc tttt
//
