LOCUS       XM_047439476            1515 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens collagen alpha-2(I) chain-like
            (LOC107984956), mRNA.
ACCESSION   XM_047439476
VERSION     XM_047439476.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000001.11) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 13% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            1..1515
                     /gene="LOC107984956"
                     /note="collagen alpha-2(I) chain-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 13 long SRA reads, and 92% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:107984956"
     CDS             1..876
                     /gene="LOC107984956"
                     /codon_start=1
                     /product="collagen alpha-2(I) chain-like"
                     /protein_id="XP_047295432.1"
                     /db_xref="GeneID:107984956"
                     /translation="MRVAKSIDRSPREIKMNKRFTVQERKTVVFVFGSDVCTLEADWD
                     QIWGICKQNDSIAPTVTTRWLFSSLAWHIYICAGPSDKNVHVSSGENEKVLGSGGGGE
                     RQGLVGTEGLPVPGKRSPGPAAGRGLRREHGALAAPRPRSLAFPAARAQRGRRSPDAV
                     AGRGVQGALWPSGAGGRSGHPTLEASLRIPACRTSVVPPQPCAPGPARRRSSGIRVAA
                     AARAPMRLGGCRALAAVAAAAAATAAPTGVGGFAAAPGAAPVPSGGGFRLRDDPRGHA
                     EAEAAAAREIHELHT"
     polyA_site      1515
                     /gene="LOC107984956"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgagggtag ccaaatcaat tgacagaagc ccaagggaga ttaaaatgaa caagagattt
       61 acagtacaag agaggaaaac agtcgtgttt gtttttggtt ctgatgtttg caccctagag
      121 gctgactggg atcaaatatg gggcatctgt aaacagaatg attccatagc ccccactgtg
      181 acaacccgtt ggctattctc ttctctggct tggcatatat atatatgtgc gggtccgagt
      241 gacaagaacg ttcacgtatc ttcgggagag aacgaaaagg tgctcgggtc tggcgggggc
      301 ggggaacgcc aggggttggt gggaactgag gggcttccgg ttcccgggaa gcggagtccc
      361 gggccggccg cgggccgcgg gctacgcagg gagcacgggg ccctcgccgc ccccaggccg
      421 cgctccttag cgttccctgc ggctcgtgcc cagcgcggcc gccgcagtcc cgacgccgta
      481 gccggacgtg gggtccaggg ggcgctgtgg cccagcggcg ccggcggcag gagcggccac
      541 ccgacgctgg aggcttcgct gaggatcccc gcctgccgca cctcggtcgt cccgccgcag
      601 ccttgcgccc ccggcccggc tcggcggcgc tcctccggga tccgcgtggc tgccgcggcc
      661 cgggcgccga tgcggctggg cgggtgccgg gccttagcag cagtagcagc cgcagctgcg
      721 gctaccgcag ctcctacagg agtgggaggt ttcgcggcgg cgcctggggc cgcgccggtg
      781 ccctccggag gaggctttcg gctcagggac gacccccgtg gccatgctga agcggaggcg
      841 gccgctgctc gagagattca tgaattacac acataacact attctctgga gtagctgtga
      901 agctctacga ggctgtgagg ttggaggcgc ttctccctgc ctgttaagct gctcccatcg
      961 catcacgaca ggatggactt tatttttctc ttttcaatta aatctttaca acagttcgaa
     1021 tgctctttcc agaatgcatc agttcaaagg ctttgttgat ttcctcaaaa gacagattgt
     1081 gagtcacaaa ttcatcaact tttatctttt tggacatata ttcagacacc aactttggga
     1141 cactttctac attcttccat cctccaaagg cagtgccttt ctatgtgtga cctgttacca
     1201 gctggaatgg acgagtggca gtttcttcac ctgaagcggc tactctagcc accacgctga
     1261 tgccccagcc cttgtgacac gcctcaagtg ctgctctcat gaccttcaca ttaccaatac
     1321 attcaaagga atagtccata gagtcgggca ccgtgttagc caggatggtg ttgatctcct
     1381 gacctcgtga tccgcctgcg tcggcctcct gcagtgctgg gattacaggc gtgagccact
     1441 gtgcccggcc ttgatgacat ttttctaagt tgctttgatt ctttatgaat aaaaaccttt
     1501 tagacatttt tctta
//
