LOCUS       XM_047438024            4844 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens long intergenic non-protein coding RNA 2798
            (LINC02798), transcript variant X2, mRNA.
ACCESSION   XM_047438024
VERSION     XM_047438024.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000001.11) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4844
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            1..4844
                     /gene="LINC02798"
                     /note="long intergenic non-protein coding RNA 2798;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 41 long SRA reads, and 89% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 10 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:107985194"
                     /db_xref="HGNC:HGNC:54323"
     CDS             313..1356
                     /gene="LINC02798"
                     /codon_start=1
                     /product="extensin-like"
                     /protein_id="XP_047293980.1"
                     /db_xref="GeneID:107985194"
                     /db_xref="HGNC:HGNC:54323"
                     /translation="MPSCAGLPLHLHYFALHRRRHGFLPPRRRGLFPPPRLGFLPAAA
                     LCPPGARAFSPPRLFDPLPLRILPPRLFVPRRFLHPAAFCTPPLFAPPAAAAFSSPWL
                     FPPCPHGFLPAAAFCPLPPRLFAPRRRDFLPPPRLGFLPAAAFYPPPPRLFARRGFVP
                     PSPPRLFARRGFLPHTRRRGFLPLRRRGFLPPPCLGFLTAAAFCPTTDTAFCTLVALA
                     FCRRGFLPPRCRGFLPLRHRRCFLPHRRRGFLPAAAFCHRGFLLATAFYPPRLFAPRC
                     HGFLPPCRSDFFAAAAFCPRRHGFLPLSPPLFAPAAAAFCCRDFLPRSPPLFVTATFC
                     PRHRGFLSPPPRL"
     polyA_site      4844
                     /gene="LINC02798"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tcccccagcc aatcagtttt caaatcttgc attttatttt gaaaggtccc tatccccctg
       61 gtctcttgtt tctagacttg gcacatattt aagtttgtta cctctctcta ctgacttttc
      121 tctcttcaaa cagtatctat gcctgccaaa tgtgaacgta caagaaacaa atcagaatgt
      181 gtcattctga tttaaactgc ttattagtta ataccctcaa gataacatct gggttcttag
      241 cttcaatgag tcaagcctac ttacatcttt ttgtctttgg ctgctcattt cctatcacat
      301 cgcactccag caatgccaag ctgtgccggc cttccactcc atctccatta tttcgccctc
      361 caccgccgcc gccacggctt tttgcccccc cgccgccgcg gcttattccc cccaccccgc
      421 ctcggctttt tgcccgccgc tgctttgtgc ccccccggcg ccagggcttt tagcccgccg
      481 cggctttttg accccttgcc gctgcgaatt ttgccgccgc ggctttttgt cccccgccgc
      541 tttttgcacc ccgccgcttt ttgcaccccg ccgctttttg ccccccccgc cgccgcggct
      601 ttttcctcgc cgtggctttt tcccccctgc ccccacggct ttttacccgc cgcggctttt
      661 tgtcccctgc cgccgcgact ttttgccccc cgccgccgcg actttttgcc cccaccccgc
      721 ctcggcttct tgcccgccgc ggctttttac cccccgccgc cgcggctttt tgcccgccgc
      781 ggatttgtgc ccccctcgcc gccgcggctt tttgcccgcc gcggctttct gccacacacc
      841 cgccgccgcg gctttttgcc cctccgccgc cgcggctttt tgcccccacc ttgcctcggc
      901 tttttgaccg ccgcggcttt ttgccccacc accgacacag ctttttgcac actcgtcgcc
      961 ttggcttttt gccgccgcgg ctttctgccc cctcgctgcc gcggcttttt gcccctccgc
     1021 caccgccgct gctttttgcc ccaccgccgc cgtggctttt tgcccgccgc agctttttgc
     1081 catcgcggct ttttactcgc cacggccttt tacccgccac ggctttttgc gccccgctgt
     1141 cacggctttt tgcccccctg ccgcagcgac tttttcgccg ccgcggcgtt ttgcccccgc
     1201 cgccacggct ttttgccgct gtcgccgccg ctttttgccc ccgccgccgc ggctttttgc
     1261 tgccgcgact ttttgccccg gtcgccgccg ctttttgtca ccgcgacttt ttgcccccgc
     1321 caccgaggat ttttgtcccc gccgccacgg ctctgagggc aggagcggca gactcggctg
     1381 ccagctctac tggcgtcctg gcaagggcag cgccgagggg tgctcctggt ccagctctcc
     1441 tggctcaggg attctttgcc taggcgccgg cgccccgggc tccttgccta ggcccctgtg
     1501 gcctgcatag agtggcgctg cctgtggagg cggtgggaga gaagaaggag ggcggtggtg
     1561 ggggtgatgc ggcggccacg gagggtggca caggggctgc ggccagccgg gcgctgcagc
     1621 agtgcgggca gctccagaag ctcatcgtca tcttcattgg cagcctgtgc gggctgtgca
     1681 ccaagtgcgc tgtgtctaac gacctcaccc agcaggagat acagaccctg gagctaggtg
     1741 atgatattct gatctatgag atgcaagaag atgtgatgtg tgggacatcc atgaaaactg
     1801 attaatgaga cctgacacaa attagagatc aagcccacta cgaccaccac catttttctc
     1861 ttctatccta tttttttgtg acctctagca tgaccatgat gccaagatct ctagcagcca
     1921 catagtgacc tgaggtaaat ctgagtatga aaatcatgtg ccaggatggt gtagaaagag
     1981 ggttttggat cctattgaca atggaaagtt ggtcttccta cctctgaacc tctttatgta
     2041 agagaagtaa cctgagtttt aaaagccatt attatttcca ttttctctgc tgatgcagac
     2101 aaacacaagt cctaatttta tagagaccta atacgttctg gacctcagaa agagattcct
     2161 ggaggaaatg ttgttttcaa ccactaactc tgctaatttc aggccaagtg aggcattata
     2221 tagacagtct gaccactgcc acagttgcat acgttctaaa tttgaaataa atcccttact
     2281 ctgtatcact tatagtggat ctgcttctct gataaaaccc tcactaagac aattatcatc
     2341 cactgtttgt ttttcctgtg gtaagtatat cattgctgta taaaaataac cttttaatta
     2401 ttaactcagt tggcccagtt tagcatcttt tccatcttcc attctcaatt tgataattac
     2461 catctttcat aataattatc cttcaggttt cacaatacat gtatgttgaa tgttaaggct
     2521 attcttcatt gatatttaca ctttgactcc atggtgagag aagctgcagt atctgagaaa
     2581 taaataattt gtatgtggga ggtgtgattt tacagctaga ttatagctca gtttctagtt
     2641 ctttctttta gagagatttc tcttggtcat ctttatagag gtatgaagat atttagtttt
     2701 actgttatta tattaacatt ttaaaaagca gctttctaca aggtatggca tcaggtggaa
     2761 ttattcttgc tgtgctctca aataatctcc atgctaagtt tttgggcctc actgcagccc
     2821 ctgaacacgt atgtctctct gtacctcctc tgtatgatgt agtgaatttt ttggaccttt
     2881 gaatcacaca caggctttct tggctgtttt ataccaaagg actttcacta aattcctaag
     2941 aaaaatttag cacagccgat gctgttttcc aatgccaacc ttggagtttg caatttgccc
     3001 agacaaaaat accatagctg atggtgatga tgatgtcaat atttttttaa aatacaattt
     3061 aaaaaatggt tcaacataaa ttatctcatt tagtcccctg aacaaccttg tgatgtgatt
     3121 ttgaacagga atatcaagac ctcaggatct ggcatcaaat tctggggttt gaatattatt
     3181 tctatcacaa actatttata ttactgctta tatgtaagtg acaacctttc tattccttat
     3241 tttttccact tgtaaaatca gaaaaatgac aatgatgaga gcaccaaact tatgagcttg
     3301 cgaagattaa atgtgtgtat gggtttttat cagtttgaga gacattatat ttccatttgt
     3361 tgtcattctg tcccttccat cagggtagga cctttcttca gtgcattact ttgtcccctg
     3421 aacctagaat ggtacctgga atatcattgg tgcccaataa gtacttgctg aataaatgac
     3481 tgaataaata aatgtaatct gtcaatattt tcatctgaag atatgatatc tgttttttac
     3541 cttatttttt caatcatccg aaaggtagta tgcacatttg aaaggtagtc attgttattt
     3601 tcttacacca gtacttgcac ttttacaata tgtagcaata atcataagca aagtatcatg
     3661 acagagtgag aataaactta aatctgtaat tgcaattttt cttcaccgtg gcctccattg
     3721 tttgtcatgt gtcttggcta cgtcaggatg gaaagcattg cttttttcta tttacaggac
     3781 cagaattaaa tccatgtttc ttggctgacc atttggttag tttttgtttg ttcatttgtt
     3841 ttttcatgaa atgttcatgg tggttgggct ggaataggta tagcatttta tttatttata
     3901 ctcagctgaa actaagagaa atatttcaga ccaagaagtg gggacaagag caatacttgt
     3961 gtaataatac gatgtaccat tttacattat ttggaagtgc tgatgcctgc atctatagca
     4021 tcagtcaaga aagagaggta atgaaagaga tttcaaatga atatcagata ggctttagta
     4081 ttacatagga taagacagac aggattggtc agggtatgct ggaaaagatt ttttatctta
     4141 ttttattggc tttatttaaa tttttttttt tttcccagct ggaaatctat ttatttattt
     4201 ttcttcagtg ttacaatgaa acaacattgc tttatttaaa ttttataaaa attcaaacca
     4261 tacagtactt tataataaaa ttgactgcct ttggctactc tatctctatt tccagtgcaa
     4321 ctgtggaagt ggcactgaca gatatggttt tagctactta gaaatttttc tagacacaca
     4381 cacacacaca cacacacaca cacacaattt atatgcaaaa tgctcatatg catgtcatat
     4441 tttttcttta ttcagcaagt tatagtggat attcttttat agcatacgta gcaatggact
     4501 tctcttttta aagactgcct agaattctgt agttataata cagtcattca tgtaactaat
     4561 tctctaaaaa caagccagat gatatttact aagaacttac tatgggtcag gcacagctct
     4621 aatagtctaa tctcatctaa tctcaatacg ttcatgagtt aggaatggtt gttattccca
     4681 tatgttccca atgaggaaac tgaagcagag agtttaaata atgtgcccta atttacagaa
     4741 ttattaaact ggtactggaa ttatgcaaag ataatcaggc atcagagttt gtgatgtcaa
     4801 ctgttatgtg atactgcaat aaacgttgta taaacctctg taaa
//
