LOCUS       NM_207510               1836 bp    mRNA    linear   PRI 08-JUN-2024
DEFINITION  Homo sapiens lipocalin like 1 (LCNL1), mRNA.
ACCESSION   NM_207510
VERSION     NM_207510.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
            Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
            Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
            Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
            Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
            Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
            Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
            Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
            Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
            Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
            Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S., Watanabe,S.,
            Yosida,M., Hotuta,T., Kusano,J., Kanehori,K., Takahashi-Fujii,A.,
            Hara,H., Tanase,T.O., Nomura,Y., Togiya,S., Komai,F., Hara,R.,
            Takeuchi,K., Arita,M., Imose,N., Musashino,K., Yuuki,H., Oshima,A.,
            Sasaki,N., Aotsuka,S., Yoshikawa,Y., Matsunawa,H., Ichihara,T.,
            Shiohata,N., Sano,S., Moriya,S., Momiyama,H., Satoh,N., Takami,S.,
            Terashima,Y., Suzuki,O., Nakagawa,S., Senoh,A., Mizoguchi,H.,
            Goto,Y., Shimizu,F., Wakebe,H., Hishigaki,H., Watanabe,T.,
            Sugiyama,A., Takemoto,M., Kawakami,B., Yamazaki,M., Watanabe,K.,
            Kumagai,A., Itakura,S., Fukuzumi,Y., Fujimori,Y., Komiyama,M.,
            Tashiro,H., Tanigami,A., Fujiwara,T., Ono,T., Yamada,K., Fujii,Y.,
            Ozaki,K., Hirao,M., Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N.,
            Inagaki,H., Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T.,
            Noguchi,S., Itoh,T., Shigeta,K., Senba,T., Matsumura,K.,
            Nakajima,Y., Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T.,
            Oyama,M., Hata,H., Watanabe,M., Komatsu,T., Mizushima-Sugano,J.,
            Satoh,T., Shirai,Y., Takahashi,Y., Nakagawa,K., Okumura,K.,
            Nagase,T., Nomura,N., Kikuchi,H., Masuho,Y., Yamashita,R.,
            Nakai,K., Yada,T., Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
  TITLE     Complete sequencing and characterization of 21,243 full-length
            human cDNAs
  JOURNAL   Nat Genet 36 (1), 40-45 (2004)
   PUBMED   14702039
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL807752.10 and BC062468.1.
            
            On May 17, 2019 this sequence version replaced NM_207510.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK127160.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1968968
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000408973.3/ ENSP00000386162.2
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-716               AL807752.10        52955-53670
            717-790             AL807752.10        54452-54525
            791-1836            BC062468.1         242-1287
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9q34.3"
     gene            1..1836
                     /gene="LCNL1"
                     /note="lipocalin like 1"
                     /db_xref="GeneID:401562"
                     /db_xref="HGNC:HGNC:34436"
     exon            1..716
                     /gene="LCNL1"
                     /inference="alignment:Splign:2.1.0"
     CDS             595..1089
                     /gene="LCNL1"
                     /codon_start=1
                     /product="lipocalin-like 1 protein"
                     /protein_id="NP_997393.3"
                     /db_xref="CCDS:CCDS43908.1"
                     /db_xref="GeneID:401562"
                     /db_xref="HGNC:HGNC:34436"
                     /translation="MVGVVSDDQDFLDSKDTMKMAVVLVTPLGNGDLALKFGYPTPHG
                     GCQKMDTTFTEGAVPGQFSNPAMALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLY
                     GGRAAGRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPP
                     APSL"
     exon            717..790
                     /gene="LCNL1"
                     /inference="alignment:Splign:2.1.0"
     exon            791..1836
                     /gene="LCNL1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1818..1823
                     /regulatory_class="polyA_signal_sequence"
                     /gene="LCNL1"
                     /note="hexamer: AATAAA"
     polyA_site      1836
                     /gene="LCNL1"
                     /note="major polyA site"
ORIGIN      
        1 aggcccaggt ccccatccag gccaactttg atgccagcca ggtgtgccca gccctgtttc
       61 ctcctcatct ccaatgagtc ctcccggctt tggtgctgca ccccgggtcc ctgtccacac
      121 cctctttgat ccaggctcag cagggctagg ggcaggggaa acccccacct cacccgctcc
      181 gtctgactgg agtaggggtt ggctggggaa gactgcagcc tccatcctac cttttcagtt
      241 gcatccccca acaatcccca gggcccaaaa tagggacaag ttggttgcct gtgcctcact
      301 gtcccccacc caccccacaa agacctgtga ccttgccaca gccccaccca tccagccgta
      361 ccccctgggt gccagctgca gacaggccgg tgctgggctg gtgggggcca gttgctcatg
      421 tactgaggcc cccctccctc agttctgcat cggggtcgag atgtgtacag cagcccctgc
      481 cgtggccagg aagcagctgt gtcggggcag aatgtggtgg gctcaggccc agggcacagg
      541 ggcggcctcc cagccttccc tgcacttgcc ctgcagttcc agggcacctg gtacatggtc
      601 ggggtggtgt cagatgacca ggacttcctg gactccaagg acaccatgaa gatggctgtg
      661 gtcttagtga cccccttggg gaatggtgac ctggccctca agtttggata ccccacgccc
      721 catggcgggt gccagaaaat ggacacgacc ttcaccgagg gtgctgtacc ggggcagttc
      781 agcaacccag ccatggccct gagtgacatc cgagtggcct tctccgacta ccagcacttt
      841 gccttgctgt acttggagat gcggaaaggg ggcctgcgga accagtggct gcagctctac
      901 ggtgggcggg ctgcggggcg gagacccaga cacccccgct tcgggtctgg gatgtcaccc
      961 ctgtgcctgc accagccctt tctgcacgcg gaaggtggaa ccgctggctc ctggtgtctg
     1021 tggccgcggg tcccggcccc tccctgcccc tctctccctc tcttcgcccc tccagcccct
     1081 tccctttagc ttacccgccc tccccacctt cagctcgagc gcccgagctg tttcccgaag
     1141 gcgcccagaa gatgcagcta ctggcgcccc aagtgggcct gagccccagc cagggcgtcc
     1201 tgctgccgaa gtcgggtgag cggtgccggc agccctgctg ggagggccag gccccgggtc
     1261 acacccctgc tggaagggcc aggccctggt cactccactg atctcagatt cgggacagaa
     1321 gtgcccgggg cagacccagc ctgtctgggt cgggggaggg cgagacgttg cccaggccgg
     1381 tgttcccagg aggagatcgc cttggggcag gtcgggggcc tccgtcccag ggaagggggc
     1441 gcggggtggc gcctcaggct cgatctctct gcagaccagt gtgcgggcgc gctctcccgg
     1501 gtgagtagac catggccatg cggagccgcg gaccatgggc cctcccagct cggtgggctg
     1561 caccgcgggg ccctctacct tcggggcagc tagggacgac agcgggggtg atggggcacc
     1621 cgggcggatc cgagccgcag cagcctgggg aaccgcgggg ctgcgcgtcg ggagggggcg
     1681 gaggcagggg acgccgccca cctgctcctt gttttgcagt gaggggtcca gcccctgagt
     1741 gcccgcaggg gtcagctgct ccgtgcgccc agccctgccc aaagagcccc ctccctccac
     1801 accctggccc caagcgcaat aaacaccctg aatgcc
//
