LOCUS       XM_047442770            2253 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens lysine demethylase 5D (KDM5D), transcript
            variant X11, mRNA.
ACCESSION   XM_047442770
VERSION     XM_047442770.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000024.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="Y"
     gene            1..2253
                     /gene="KDM5D"
                     /gene_synonym="HY; HYA; JARID1D; SMCY"
                     /note="lysine demethylase 5D; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 14 ESTs, 230 long SRA reads, 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 55 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:8284"
                     /db_xref="HGNC:HGNC:11115"
                     /db_xref="MIM:426000"
     CDS             76..2136
                     /gene="KDM5D"
                     /gene_synonym="HY; HYA; JARID1D; SMCY"
                     /codon_start=1
                     /product="lysine-specific demethylase 5D isoform X11"
                     /protein_id="XP_047298726.1"
                     /db_xref="GeneID:8284"
                     /db_xref="HGNC:HGNC:11115"
                     /db_xref="MIM:426000"
                     /translation="MEPGCDEFLPPPECPVFEPSWAEFQDPLGYIAKIRPIAEKSGIC
                     KIRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKI
                     PNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPGKNIGSLLRSHYERI
                     IYPYEMFQSGANHVQCNTHPFDNEVKDKEYKPHSIPLRQSVQPSKFSSYSRRAKRLQP
                     DPEPTEEDIEKHPELKKLQIYGPGPKMMGLGLMAKDKDKTVHKKVTCPPTVTVKDEQS
                     GGGNVSSTLLKQHLSLEPCTKTTMQLRKNHSSAQFIDSYICQVCSRGDEDDKLLFCDG
                     CDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMAD
                     SFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSNSKQ
                     NLSPEEKEYATSGWNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDH
                     WSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKMLTPELFDSQPDLLHQLVTLMNPNTL
                     MSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYR
                     RLRRYCVFSHEELICKMAAFPETLDLNLAVAVHKEMFIMVQEERRLRKALLEKLSLQG
                     RHGG"
ORIGIN      
        1 actgcagggc ccggaggtca agatggtggc tgtaaaacta ggatccctga cgattgctta
       61 gcattaaggc ccgacatgga accggggtgt gacgagttcc tgccgccacc ggagtgcccg
      121 gtttttgagc ctagctgggc tgaattccaa gacccgcttg gctacattgc gaaaataagg
      181 cccatagcag agaagtctgg catctgcaaa atccgcccac ccgcggattg gcagcctcct
      241 tttgcagtag aagttgacaa tttcagattt actcctcgcg tccaaaggct aaatgaactg
      301 gaggcccaaa ctagagtgaa attgaactat ttggatcaga ttgcaaaatt ctgggaaatt
      361 caaggctcct ctttaaagat tcccaatgtg gagcggaaga tcttggacct ctacagcctt
      421 agtaagattg tgattgagga aggtggctat gaagccatct gcaaggatcg tcggtgggct
      481 cgagttgccc agcgtctcca ctacccacca ggcaaaaaca ttggctccct gctacgatca
      541 cattacgaac gcattattta cccctatgaa atgtttcagt ctggagccaa ccatgtgcaa
      601 tgtaacacac acccgtttga caatgaggta aaagataagg aatacaagcc ccacagcatc
      661 ccccttagac agtctgtgca gccttcaaag ttcagcagct acagtcgacg ggcaaaaagg
      721 ctacagcctg atccagagcc tacagaggag gacattgaga agcatccaga gctaaagaag
      781 ttacagatat atgggccagg tcccaaaatg atgggcttgg gccttatggc taaggataag
      841 gataagactg tgcataagaa agtcacatgc cccccaactg ttacggtgaa ggatgagcaa
      901 agtggaggtg ggaacgtgtc atcaacattg ctcaagcagc acttgagcct agagccctgc
      961 actaagacaa ccatgcaact tcgaaagaat cacagcagtg cccagtttat tgactcatat
     1021 atttgccaag tatgctcccg tggggatgaa gatgataagc ttcttttctg tgatggctgt
     1081 gatgacaatt accacatctt ctgcttgtta ccaccccttc ctgaaatccc cagaggcatc
     1141 tggaggtgcc caaaatgtat cttggcggag tgtaaacagc ctcctgaagc ttttggattt
     1201 gaacaggcta cccaggagta cagtttgcag agttttggtg aaatggctga ttccttcaag
     1261 tccgactact tcaacatgcc tgtacatatg gtgcctacag aacttgtaga gaaggaattc
     1321 tggaggctgg tgagcagcat tgaggaagac gtgacagttg aatatggagc tgatattcat
     1381 tccaaagaat ttggcagtgg ctttcctgtc agcaatagca aacaaaactt atctcctgag
     1441 gagaaggagt atgcgaccag tggttggaac ctgaatgtga tgccagtgct agatcagtct
     1501 gttctctgtc acatcaatgc agacatctca ggcatgaagg tgccctggct gtacgtgggc
     1561 atggttttct cagcattttg ttggcatatt gaggatcact ggagttactc tattaactat
     1621 ctgcattggg gtgagccgaa gacctggtat ggtgtaccct ccctggcagc agagcatttg
     1681 gaggaggtga tgaagatgct gacacctgag ctgtttgata gccagcctga tctcctacac
     1741 cagcttgtca ctctcatgaa tcccaacact ttgatgtccc atggtgtgcc agttgtccgc
     1801 acaaaccagt gtgcagggga gtttgtcatc acttttcctc gtgcttacca cagtggtttt
     1861 aaccaaggct acaattttgc tgaagctgtc aacttttgta ctgctgactg gctacctgct
     1921 ggacgccagt gcattgaaca ctaccgccgg ctccggcgct attgtgtctt ctcccacgag
     1981 gagctcatct gcaagatggc tgccttccca gagacgttgg atctcaatct agcagtagct
     2041 gtgcacaagg agatgttcat tatggttcag gaggagcgac gtctacgaaa ggcccttttg
     2101 gagaagcttt ccttacaagg gcgtcacgga ggctgagcga gaggcttttg agctgctccc
     2161 agatgatgaa cgccagtgca tcaagtgcaa gaccacgtgc ttcttgtcag ccctggcctg
     2221 ctacgactgc ccagatggcc ttgtatgcct ttc
//
