LOCUS       NM_004884               4441 bp    mRNA    linear   PRI 06-JUN-2024
DEFINITION  Homo sapiens immunoglobulin superfamily DCC subclass member 3
            (IGDCC3), mRNA.
ACCESSION   NM_004884
VERSION     NM_004884.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4441)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
REFERENCE   2  (bases 1 to 4441)
  AUTHORS   Salbaum,J.M.
  TITLE     Genomic structure and chromosomal localization of the mouse gene
            Punc
  JOURNAL   Mamm Genome 10 (2), 107-111 (1999)
   PUBMED   9922388
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC067107.1, AC105129.4 and AI740721.1.
            
            On Nov 22, 2018 this sequence version replaced NM_004884.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC042054.1, SRR9304715.358223.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA1965299,
                                           SAMEA1966682 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000327987.9/ ENSP00000332773.4
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-333               BC067107.1         39-371
            334-334             AC105129.4         110370-110370
            335-2289            BC067107.1         373-2327
            2290-2290           AC105129.4         156237-156237
            2291-2464           BC067107.1         2329-2502
            2465-2465           AC105129.4         156653-156653
            2466-2767           BC067107.1         2504-2805
            2768-4109           AC105129.4         156956-158297
            4110-4441           AI740721.1         13-344              c
FEATURES             Location/Qualifiers
     source          1..4441
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="15"
                     /map="15q22.31"
     gene            1..4441
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /note="immunoglobulin superfamily DCC subclass member 3"
                     /db_xref="GeneID:9543"
                     /db_xref="HGNC:HGNC:9700"
                     /db_xref="MIM:604184"
     exon            1..317
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     CDS             215..2659
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /note="putative neuronal cell adhesion molecule"
                     /codon_start=1
                     /product="immunoglobulin superfamily DCC subclass member 3
                     precursor"
                     /protein_id="NP_004875.2"
                     /db_xref="CCDS:CCDS10205.1"
                     /db_xref="GeneID:9543"
                     /db_xref="HGNC:HGNC:9700"
                     /db_xref="MIM:604184"
                     /translation="MAVQRAASPRRPPAPLWPRLLLPLLLLLLPAPSEGLGHSAELAF
                     AVEPSDDVAVPGQPIVLDCRVEGTPPVRITWRKNGVELPESTHSTLLANGSLMIRHFR
                     LEPGGSPSDEGDYECVAQNRFGLVVSRKARIQAATMSDFHVHPQATVGEEGGVARFQC
                     QIHGLPKPLITWEKNRVPIDTDNERYTLLPKGVLQITGLRAEDGGIFHCVASNIASIR
                     ISHGARLTVSGSGSGAYKEPAILVGPENLTLTVHQTAVLECVATGNPRPIVSWSRLDG
                     RPIGVEGIQVLGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQGRLVVQAPAEFVQ
                     HPQSISRPAGTTAMFTCQAQGEPPPHVTWLKNGQVLGPGGHVRLKNNNSTLTISGIGP
                     EDEAIYQCVAENSAGSSQASARLTVLWAEGLPGPPRNVRAVSVSSTEVRVSWSEPLAN
                     TKEIIGYVLHIRKAADPPELEYQEAVSKSTFQHLVSDLEPSTAYSFYIKAYTPRGASS
                     ASVPTLASTLGEAPAPPPLSVRVLGSSSLQLLWEPWPRLAQHEGGFKLFYRPASKTSF
                     TGPILLPGTVSSYNLSQLDPTAVYEVKLLAYNQHGDGNATVRFVSLRGASERTALSPP
                     CDCRKEEAANQTSTTGIVIGIHIGVTCIIFCVLFLLFGQRGRVLLCKDVENQLSPPQG
                     PRSQRDPGILALNGARRGQRGQLGRDEKRVDMKELEQLFPPASAAGQPDPRPTQDPAA
                     PAPCEETQLSVLPLQGCGLMEGKTTEAKTTEATAPCAGLAAAPPPPDGGPGLLSEGQA
                     SRPAAARVTQPAHSEQ"
     exon            318..623
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            624..768
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            769..899
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1037
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1196
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            1197..1362
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            1363..1610
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            1611..1775
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..1967
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            1968..2072
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            2073..2211
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            2212..2419
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     exon            2420..4441
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4416..4421
                     /regulatory_class="polyA_signal_sequence"
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /note="hexamer: AATAAA"
     polyA_site      4441
                     /gene="IGDCC3"
                     /gene_synonym="HsT18880; PUNC"
                     /note="major polyA site"
ORIGIN      
        1 gacagatcgc ccgggtgggt gcaagatggc gcaagcggcg ctccccctgc gccccccgcg
       61 ctgctgagca ggcatgcggc cccagtcccc caccgcctgg gctcggcccc ggccggagcc
      121 ccagccccgg ccccggcgcc ggccccgcgg gacgctgtga gccgcgagag gcccgggagc
      181 cgcgcgtcgc cgagccgagc tgaccgagag ccccatggct gtgcagcgcg ccgcgtctcc
      241 gcgccgcccg cccgccccgc tctggccccg gctcctgctg ccgctgctgt tgctgctgct
      301 gcccgcgccg agcgagggtc ttggccactc tgctgaactg gcatttgctg tggagccaag
      361 tgatgatgtt gccgtccccg ggcagcctat agtgctggac tgcagggtgg aggggacccc
      421 tccagtgcga atcacctgga ggaagaatgg ggtagagctg ccagagagta cccactccac
      481 cttgctggcc aatgggtcct tgatgatccg tcacttcagg ctggagccgg gaggcagccc
      541 ttcggatgaa ggtgactatg agtgtgtggc ccagaaccgc tttgggctgg tggtcagccg
      601 gaaggctcgc atccaagctg caaccatgtc ggacttccac gtgcatcccc aggccaccgt
      661 gggtgaggag ggtggtgtgg cccgcttcca gtgccaaatc catgggcttc ccaaacccct
      721 gatcacttgg gagaagaaca gagtcccaat tgacacggac aatgagaggt acacattgct
      781 gcccaagggg gtcctgcaga tcacaggact tcgagctgag gacggtggca tcttccactg
      841 tgtggcctca aacatcgcca gtatccggat cagccacggg gccaggctca ctgtgtcagg
      901 ctcgggctct ggggcctaca aggagccagc catcctcgtg gggcctgaga acctcaccct
      961 gacagtgcac cagaccgcgg tgcttgagtg tgtcgccacg ggcaacccgc gccccattgt
     1021 gtcctggagc cgcctggatg gtcgccctat cggggtggag ggcatccagg tgctgggcac
     1081 aggaaacctc atcatctcag acgtgacggt ccagcactct ggcgtctacg tctgtgcagc
     1141 caacagacct ggcacccggg tgaggagaac ggcacagggc cggctggtgg tgcaagcccc
     1201 agctgagttt gtgcagcatc cccagtccat ctccaggcca gctgggacca cagccatgtt
     1261 cacctgccaa gcccagggtg agccaccgcc tcatgtcacg tggctgaaaa atggacaggt
     1321 gctggggcca ggaggccacg tcaggctcaa gaataacaac agcacactga ccatttctgg
     1381 aatcggtcct gaggatgaag ccatttatca gtgtgtggcc gagaacagtg cgggctcatc
     1441 acaggccagt gccaggctga ccgtactgtg ggctgagggg ctccccgggc ctccccgcaa
     1501 tgtgcgggca gtctctgtgt cttccactga ggtgcgtgtg tcctggagtg agccgctggc
     1561 caacaccaag gagatcatcg gctacgtcct gcacatcagg aaggctgctg acccaccgga
     1621 gctggagtat caggaggcag tcagcaagag cacctttcag cacctggtca gcgacctgga
     1681 gccctccaca gcctacagtt tctacatcaa ggcctacaca ccaagggggg ccagctcagc
     1741 ctctgtgccc accctagcta gcaccctggg tgaagcccct gccccacccc cactgtcagt
     1801 gcgagtcctg ggcagctcct ccttgcagct gctgtgggag ccttggcccc ggctggccca
     1861 gcacgagggc ggcttcaagc tgttttaccg cccagcaagc aagacctcct tcaccggccc
     1921 catcctgctg cctggaaccg tctcctccta caacctcagc cagctcgacc ccactgcagt
     1981 gtatgaggtg aagctgctcg cctacaacca gcatggagat ggcaatgcca cagtccgctt
     2041 tgtgtctttg aggggagcat ctgagaggac agccttgagc ccaccatgtg actgccggaa
     2101 ggaggaggcc gccaaccaga cgtccaccac aggcatcgtc atcggcatcc acatcggggt
     2161 cacttgcatc atcttctgtg tcctcttcct cctgttcggc caaaggggca gggtcctcct
     2221 gtgtaaagat gtggaaaacc agctgtcccc tccacagggt ccccggagcc agagggaccc
     2281 tggcattcta gccctaaatg gggcgagacg gggacagcgg ggccagctgg gccgagacga
     2341 gaaacgtgtg gatatgaagg agctggagca gctgttcccc ccggccagcg cagcagggca
     2401 gccggacccc agacccacac aggatcctgc agcccccgct ccgtgtgagg agacccagct
     2461 ctccgtgctg ccacttcagg ggtgcggcct gatggagggg aagacgacgg aggcgaagac
     2521 cacagaggcc acggctccct gcgccggcct ggcggctgcc ccaccacccc cagatggagg
     2581 ccctggcctc ctcagtgaag gccaggcttc caggcctgca gcggcccggg ttacccagcc
     2641 agctcactcg gaacagtagc cagtgtctgg caggctccag agggtggacg gagcggggcc
     2701 cattctcagg tcaaaagcaa gatttctact gtcatgtggg atttggatgg tcctgggggc
     2761 tccccagcat ttctatcctg actgcctctt gggttgtcaa aacccaaggc agccttgaca
     2821 gggacccccc ggccctaaca cccatcagga gttggagcag ttcctgcagg agcctgttcc
     2881 ttccctgggc tgacgccccc ttgcctctgc ctggtaccca catgacttgg aactgaacta
     2941 acatttttct ttaaaaagca aaacttaaaa aaaaaaaaaa agaggagaga gatagaggaa
     3001 ggtgaattag actccaaaag atgaccctgc tgtagctggg ccctgacact gtcaccctcc
     3061 accgactttg ttttctcagg atggattttt gctgttttgg ctctcagcac ctacctcagc
     3121 cggaatgaat gtcctggggg gcagtggggc ggtggcctca gcccccttac cccacagagc
     3181 ccgaatgcac tcctacctca agtccccttg ctggggaccc cctctccctt cccacactgt
     3241 tgtccagagt aaaaaaaaaa aaaaaaaaaa aagcacttcc ccgtttccag gtgtgaaaga
     3301 aaaaaaaaag cacttcccca tttccagatg tgaaagaaaa tgtctacctc aaggctcgct
     3361 ggctctgtgg gctgtgttgt cactggacct gcctccccgc ccctcctgcc cacagcccac
     3421 ctacctctcc tgcagaggag aggccagagg ttgggccacc aaggggaact cttgtggcct
     3481 acagaaatag aaatggattg ggcagagaaa aaatgtgaaa gcagccaaaa atgagaggaa
     3541 atttgttcct tgaagtataa attgtccaaa cgagccacct cccagcacac cgcctgtccc
     3601 cgtcttgtct gtccactccc attttgagcc agcccatcct tgatggggat gcccatgagg
     3661 aacctgggct tgggagggtg gcatcagctg gccgcctgcc tcctgtcctg caggcccggc
     3721 ccctggaatg taccatgtgt gggatgggtg tgtgggaggg tgagggggtg tgggtgtccc
     3781 ctgcagaggc gccccagcct caggcaccca gccagcctga tccacccctc gacaggggag
     3841 catccactgt cagcagccat ggccggaagc tatttttata caaggtgtgt taagggttat
     3901 gttcttgtga ctttttgtta ctcttttctg ttgtgttgtt ctttgaacta cttagttaaa
     3961 gaagaagaaa agaaaaccaa ggaaacaaat acctattttt ggttatactc agaaacattt
     4021 ttttaaatag cagaagaaaa acttttttta aagaaaaaag ataagtgtat tccttaagaa
     4081 tgagaccata aatatccctg acccccaatc ctctagggac acctccaccc tgaactttag
     4141 ttaattagct gaagaagata gaatttgtgg tgttttccta gaaaactaga gctgtgtccg
     4201 cgtggacttg gggaagggta gtcccttccc ttctcccaaa tgatgtgtgg atgcccaggg
     4261 ctccacaaag ctccaaggca gtgccccctc tgttcccaaa gcagcttctc tcgggagcct
     4321 ccctctccct tgggaagggt gcggctgggg caggaggggg ctggggggcc acctggcctt
     4381 acttgggttt tgtcacactc tgctcatttt gactgaataa aagtcctgtt gccaaagtga
     4441 a
//
