LOCUS       NM_001395966            1513 bp    mRNA    linear   PRI 06-AUG-2024
DEFINITION  Homo sapiens IGBP1 family member C (IGBP1C), mRNA.
ACCESSION   NM_001395966
VERSION     NM_001395966.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Venter,J.C., Adams,M.D., Myers,E.W., Li,P.W., Mural,R.J.,
            Sutton,G.G., Smith,H.O., Yandell,M., Evans,C.A., Holt,R.A.,
            Gocayne,J.D., Amanatides,P., Ballew,R.M., Huson,D.H., Wortman,J.R.,
            Zhang,Q., Kodira,C.D., Zheng,X.H., Chen,L., Skupski,M.,
            Subramanian,G., Thomas,P.D., Zhang,J., Gabor Miklos,G.L.,
            Nelson,C., Broder,S., Clark,A.G., Nadeau,J., McKusick,V.A.,
            Zinder,N., Levine,A.J., Roberts,R.J., Simon,M., Slayman,C.,
            Hunkapiller,M., Bolanos,R., Delcher,A., Dew,I., Fasulo,D.,
            Flanigan,M., Florea,L., Halpern,A., Hannenhalli,S., Kravitz,S.,
            Levy,S., Mobarry,C., Reinert,K., Remington,K., Abu-Threideh,J.,
            Beasley,E., Biddick,K., Bonazzi,V., Brandon,R., Cargill,M.,
            Chandramouliswaran,I., Charlab,R., Chaturvedi,K., Deng,Z., Di
            Francesco,V., Dunn,P., Eilbeck,K., Evangelista,C., Gabrielian,A.E.,
            Gan,W., Ge,W., Gong,F., Gu,Z., Guan,P., Heiman,T.J., Higgins,M.E.,
            Ji,R.R., Ke,Z., Ketchum,K.A., Lai,Z., Lei,Y., Li,Z., Li,J.,
            Liang,Y., Lin,X., Lu,F., Merkulov,G.V., Milshina,N., Moore,H.M.,
            Naik,A.K., Narayan,V.A., Neelam,B., Nusskern,D., Rusch,D.B.,
            Salzberg,S., Shao,W., Shue,B., Sun,J., Wang,Z., Wang,A., Wang,X.,
            Wang,J., Wei,M., Wides,R., Xiao,C., Yan,C., Yao,A., Ye,J., Zhan,M.,
            Zhang,W., Zhang,H., Zhao,Q., Zheng,L., Zhong,F., Zhong,W., Zhu,S.,
            Zhao,S., Gilbert,D., Baumhueter,S., Spier,G., Carter,C.,
            Cravchik,A., Woodage,T., Ali,F., An,H., Awe,A., Baldwin,D.,
            Baden,H., Barnstead,M., Barrow,I., Beeson,K., Busam,D., Carver,A.,
            Center,A., Cheng,M.L., Curry,L., Danaher,S., Davenport,L.,
            Desilets,R., Dietz,S., Dodson,K., Doup,L., Ferriera,S., Garg,N.,
            Gluecksmann,A., Hart,B., Haynes,J., Haynes,C., Heiner,C.,
            Hladun,S., Hostin,D., Houck,J., Howland,T., Ibegwam,C., Johnson,J.,
            Kalush,F., Kline,L., Koduru,S., Love,A., Mann,F., May,D.,
            McCawley,S., McIntosh,T., McMullen,I., Moy,M., Moy,L., Murphy,B.,
            Nelson,K., Pfannkoch,C., Pratts,E., Puri,V., Qureshi,H.,
            Reardon,M., Rodriguez,R., Rogers,Y.H., Romblad,D., Ruhfel,B.,
            Scott,R., Sitter,C., Smallwood,M., Stewart,E., Strong,R., Suh,E.,
            Thomas,R., Tint,N.N., Tse,S., Vech,C., Wang,G., Wetter,J.,
            Williams,S., Williams,M., Windsor,S., Winn-Deen,E., Wolfe,K.,
            Zaveri,J., Zaveri,K., Abril,J.F., Guigo,R., Campbell,M.J.,
            Sjolander,K.V., Karlak,B., Kejariwal,A., Mi,H., Lazareva,B.,
            Hatton,T., Narechania,A., Diemer,K., Muruganujan,A., Guo,N.,
            Sato,S., Bafna,V., Istrail,S., Lippert,R., Schwartz,R., Walenz,B.,
            Yooseph,S., Allen,D., Basu,A., Baxendale,J., Blick,L., Caminha,M.,
            Carnes-Stine,J., Caulk,P., Chiang,Y.H., Coyne,M., Dahlke,C.,
            Deslattes Mays,A., Dombroski,M., Donnelly,M., Ely,D., Esparham,S.,
            Fosler,C., Gire,H., Glanowski,S., Glasser,K., Glodek,A.,
            Gorokhov,M., Graham,K., Gropman,B., Harris,M., Heil,J.,
            Henderson,S., Hoover,J., Jennings,D., Jordan,C., Jordan,J.,
            Kasha,J., Kagan,L., Kraft,C., Levitsky,A., Lewis,M., Liu,X.,
            Lopez,J., Ma,D., Majoros,W., McDaniel,J., Murphy,S., Newman,M.,
            Nguyen,T., Nguyen,N., Nodell,M., Pan,S., Peck,J., Peterson,M.,
            Rowe,W., Sanders,R., Scott,J., Simpson,M., Smith,T., Sprague,A.,
            Stockwell,T., Turner,R., Venter,E., Wang,M., Wen,M., Wu,D., Wu,M.,
            Xia,A., Zandieh,A. and Zhu,X.
  TITLE     The sequence of the human genome
  JOURNAL   Science 291 (5507), 1304-1351 (2001)
   PUBMED   11181995
  REMARK    Erratum:[Science 2001 Jun 5;292(5523):1838]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC011195.14.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189667.206049.1, BM908023.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000583666.3/ ENSP00000492384.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-107               AC011195.14        25544-25650
            108-1513            AC011195.14        55760-57165
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="17"
                     /map="17q22"
     gene            1..1513
                     /gene="IGBP1C"
                     /gene_synonym="IGBP1P2"
                     /note="IGBP1 family member C"
                     /db_xref="GeneID:645545"
                     /db_xref="HGNC:HGNC:43611"
     exon            1..107
                     /gene="IGBP1C"
                     /gene_synonym="IGBP1P2"
                     /inference="alignment:Splign:2.1.0"
     exon            108..1513
                     /gene="IGBP1C"
                     /gene_synonym="IGBP1P2"
                     /inference="alignment:Splign:2.1.0"
     CDS             338..1360
                     /gene="IGBP1C"
                     /gene_synonym="IGBP1P2"
                     /note="hCG1642624; immunoglobulin (CD79A) binding protein
                     1 pseudogene 2; immunoglobulin (CD79A) binding protein 1
                     family member C"
                     /codon_start=1
                     /product="immunoglobulin-binding protein 1 family member
                     C"
                     /protein_id="NP_001382895.1"
                     /db_xref="CCDS:CCDS92369.1"
                     /db_xref="GeneID:645545"
                     /db_xref="HGNC:HGNC:43611"
                     /translation="MAAAEDEFLPPPRLPELFDSSKQLLDEVEGATEPTGSRIVQEKV
                     FKGLDLLDKVAKMLSQLDLFSRNEDLEEITSTDLKYLMVPAFQGALTMKQVNPRKRLD
                     HLQQAREHFIKYLTQCHYYRVAEFELPQTKTNSAENHGAITSTAYPSLVAMASQRQAK
                     IERYKQKKVLEHKLSTMKSAVESGQADNERVREYYLLHLQRWIDISLEEIESIDQEIK
                     ILGEKDSSREASTSNSCHQKRPPMKPFILTRNMAQAKVFGAGYPSLASMTVSDWYDQH
                     QKHGVLPDQGIAKATPEEFRKATQQQEDQEKEEEDDEQTLQRAREWDDWKDTHPRGYG
                     NRQNMG"
     regulatory      1494..1499
                     /regulatory_class="polyA_signal_sequence"
                     /gene="IGBP1C"
                     /gene_synonym="IGBP1P2"
                     /note="hexamer: AATAAA"
     polyA_site      1513
                     /gene="IGBP1C"
                     /gene_synonym="IGBP1P2"
                     /note="major polyA site"
ORIGIN      
        1 attccccgca cccacccacg tcttcccggg agtcgtatcc cgagcatgga ggttactgag
       61 accgttattt cttcatggcc tgcctagctt aagcagtagc tggaaaagaa acggaaacag
      121 agagacaaag tttgacgaag acccggagtg gagcagcgat tcagacccgg cacaaccgac
      181 tccgttgcct tcccctatgc cgcccccaac gccaccgcct ccctgactgc cctgccgtgc
      241 agcgcccgat tcagactggt tgttagaaat ctacgccaga atctttacgt gtgtccagaa
      301 aggaaaggaa tcaacatttc gcatcagcct tcccaagatg gcagctgctg aagacgagtt
      361 cctgccgccg ccgcggctcc ccgagctgtt cgattccagc aaacagcttc tggacgaagt
      421 cgaaggagcg actgaaccca ccggttcccg aatagtccag gaaaaggtgt tcaagggcct
      481 cgacctcctt gacaaggttg ccaaaatgtt atcgcagctt gacttgttca gccgaaatga
      541 agatttggag gagattactt ccaccgacct gaagtacctg atggtgccag cgtttcaagg
      601 agccctcacc atgaaacaag tcaacccccg taagcgtcta gatcatttgc agcaggctcg
      661 cgaacacttt ataaaatact taactcagtg ccattactat cgtgtggccg agtttgagct
      721 gccccaaacc aagaccaact cagctgaaaa tcacggtgct attacctcca cggcttatcc
      781 tagcctcgtt gctatggcat ctcaaagaca ggctaaaata gagcgataca agcagaagaa
      841 ggtgttggag cataagttgt ctacaatgaa atctgctgtg gaaagtggtc aagcagataa
      901 tgagcgtgtt cgtgaatatt atcttcttca ccttcagagg tggattgata tcagcttaga
      961 agagattgag agcattgatc aggaaataaa gatcctggga gagaaagact cttcaagaga
     1021 ggcatccact tctaactcat gtcaccagaa gaggcctcca atgaaaccct tcattctcac
     1081 tcggaacatg gcgcaagcca aagtatttgg cgctggctat ccaagtctgg cttccatgac
     1141 agtgagtgac tggtatgatc aacatcagaa acatggagtg ttaccagatc agggaatagc
     1201 caaggcaaca ccagaagaat tcagaaaagc cactcagcaa caggaagatc aagaaaagga
     1261 ggaagaggat gatgaacaaa cactccaaag agctcgagag tgggatgact ggaaggacac
     1321 ccaccctagg ggctacggca accgacagaa catgggctaa tcttcccaca acaccgcagg
     1381 actgcagggt gcacaccttc cccgccaagg aaaaccatgc agccttcccc tccctgagct
     1441 cccctacagc tgtgtaaaac gaaggcaaag atgcttaatg ttgctttgag ttcaataaag
     1501 tgttaaatta tta
//
