LOCUS       NM_006900                686 bp    mRNA    linear   PRI 02-APR-2024
DEFINITION  Homo sapiens interferon alpha 13 (IFNA13), mRNA.
ACCESSION   NM_006900
VERSION     NM_006900.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Liu,J., Li,H., Lan,T. and Wang,W.
  TITLE     IFNA1 and IFNA13 Genes Confer Genetic Predisposition to Ankylosing
            Spondylitis-Associated Uveitis in a Chinese Population
  JOURNAL   Curr Eye Res 46 (4), 585-591 (2021)
   PUBMED   32990094
  REMARK    GeneRIF: IFNA1 and IFNA13 Genes Confer Genetic Predisposition to
            Ankylosing Spondylitis-Associated Uveitis in a Chinese Population.
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
REFERENCE   3  (bases 1 to 686)
  AUTHORS   Mesev,E.V., LeDesma,R.A. and Ploss,A.
  TITLE     Decoding type I and III interferon signalling during viral
            infection
  JOURNAL   Nat Microbiol 4 (6), 914-924 (2019)
   PUBMED   30936491
  REMARK    Review article
REFERENCE   4  (bases 1 to 686)
  AUTHORS   Silva,L.K., Blanton,R.E., Parrado,A.R., Melo,P.S., Morato,V.G.,
            Reis,E.A., Dias,J.P., Castro,J.M., Vasconcelos,P.F., Goddard,K.A.,
            Barreto,M.L., Reis,M.G. and Teixeira,M.G.
  TITLE     Dengue hemorrhagic fever is associated with polymorphisms in JAK1
  JOURNAL   Eur J Hum Genet 18 (11), 1221-1227 (2010)
   PUBMED   20588308
  REMARK    GeneRIF: Observational study of gene-disease association. (HuGE
            Navigator)
REFERENCE   5  (bases 1 to 686)
  AUTHORS   Schuurhof,A., Bont,L., Siezen,C.L., Hodemaekers,H., van
            Houwelingen,H.C., Kimman,T.G., Hoebee,B., Kimpen,J.L. and
            Janssen,R.
  TITLE     Interleukin-9 polymorphism in infants with respiratory syncytial
            virus infection: an opposite effect in boys and girls
  JOURNAL   Pediatr Pulmonol 45 (6), 608-613 (2010)
   PUBMED   20503287
  REMARK    GeneRIF: Observational study of gene-disease association. (HuGE
            Navigator)
REFERENCE   6  (bases 1 to 686)
  AUTHORS   Olopade,O.I., Bohlander,S.K., Pomykala,H., Maltepe,E., Van
            Melle,E., Le Beau,M.M. and Diaz,M.O.
  TITLE     Mapping of the shortest region of overlap of deletions of the short
            arm of chromosome 9 associated with human neoplasia
  JOURNAL   Genomics 14 (2), 437-443 (1992)
   PUBMED   1385305
REFERENCE   7  (bases 1 to 686)
  AUTHORS   Sen,G.C. and Lengyel,P.
  TITLE     The interferon system. A bird's eye view of its biochemistry
  JOURNAL   J Biol Chem 267 (8), 5017-5020 (1992)
   PUBMED   1371992
  REMARK    Review article
REFERENCE   8  (bases 1 to 686)
  AUTHORS   Henco,K., Brosius,J., Fujisawa,A., Fujisawa,J.I., Haynes,J.R.,
            Hochstadt,J., Kovacic,T., Pasek,M., Schambock,A., Schmid,J. et al.
  TITLE     Structural relationship of human interferon alpha genes and
            pseudogenes
  JOURNAL   J Mol Biol 185 (2), 227-260 (1985)
   PUBMED   4057246
REFERENCE   9  (bases 1 to 686)
  AUTHORS   Capon,D.J., Shepard,H.M. and Goeddel,D.V.
  TITLE     Two distinct families of human and bovine interferon-alpha genes
            are coordinately expressed and encode functional polypeptides
  JOURNAL   Mol Cell Biol 5 (4), 768-779 (1985)
   PUBMED   2985969
REFERENCE   10 (bases 1 to 686)
  AUTHORS   Taniguchi,T., Mantei,N., Schwarzstein,M., Nagata,S., Muramatsu,M.
            and Weissmann,C.
  TITLE     Human leukocyte and fibroblast interferons are structurally related
  JOURNAL   Nature 285 (5766), 547-549 (1980)
   PUBMED   6157095
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL353732.14.
            
            On Jul 25, 2019 this sequence version replaced NM_006900.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC112002.1, EL736221.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000610660.2/ ENSP00000480467.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 5' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-686               AL353732.14        24109-24794         c
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9p21.3"
     gene            1..686
                     /gene="IFNA13"
                     /note="interferon alpha 13"
                     /db_xref="GeneID:3447"
                     /db_xref="HGNC:HGNC:5419"
                     /db_xref="MIM:147578"
     exon            1..686
                     /gene="IFNA13"
                     /inference="alignment:Splign:2.1.0"
     CDS             48..620
                     /gene="IFNA13"
                     /note="interferon alpha-1/13; leIF D; IFN-alpha-1/13;
                     interferon alpha-D"
                     /codon_start=1
                     /product="interferon alpha-1/13 precursor"
                     /protein_id="NP_008831.3"
                     /db_xref="CCDS:CCDS6505.2"
                     /db_xref="GeneID:3447"
                     /db_xref="HGNC:HGNC:5419"
                     /db_xref="MIM:147578"
                     /translation="MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQ
                     MSRISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWD
                     EDLLDKFCTELYQQLNDLEACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKY
                     SPCAWEVVRAEIMRSLSLSTNLQERLRRKE"
ORIGIN      
        1 gttcagagtc acccatctca gcaagcccag aagcatctgc aatatctatg atggcctcgc
       61 cctttgcttt actgatggcc ctggtggtgc tcagctgcaa gtcaagctgc tctctgggct
      121 gtgatctccc tgagacccac agcctggata acaggaggac cttgatgctc ctggcacaaa
      181 tgagcagaat ctctccttcc tcctgtctga tggacagaca tgactttgga tttccccagg
      241 aggagtttga tggcaaccag ttccagaagg ctccagccat ctctgtcctc catgagctga
      301 tccagcagat cttcaacctc tttaccacaa aagattcatc tgctgcttgg gatgaggacc
      361 tcctagacaa attctgcacc gaactctacc agcagctgaa tgacttggaa gcctgtgtga
      421 tgcaggagga gagggtggga gaaactcccc tgatgaatgc ggactccatc ttggctgtga
      481 agaaatactt ccgaagaatc actctctatc tgacagagaa gaaatacagc ccttgtgcct
      541 gggaggttgt cagagcagaa atcatgagat ccctctcttt atcaacaaac ttgcaagaaa
      601 gattaaggag gaaggaataa cacctggtcc aacatgaaac aattcttatt gactcatata
      661 ccaggtcacg ctttcatgaa ttctgc
//
