LOCUS       XM_047444092            2716 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens homeobox D3 (HOXD3), transcript variant X9,
            mRNA.
ACCESSION   XM_047444092
VERSION     XM_047444092.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000002.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2716
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="2"
     gene            1..2716
                     /gene="HOXD3"
                     /gene_synonym="Hox-4.1; HOX1D; HOX4; HOX4A"
                     /note="homeobox D3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 6 ESTs, 174 long
                     SRA reads, 11 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 14 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:3232"
                     /db_xref="HGNC:HGNC:5137"
                     /db_xref="MIM:142980"
     CDS             594..1892
                     /gene="HOXD3"
                     /gene_synonym="Hox-4.1; HOX1D; HOX4; HOX4A"
                     /codon_start=1
                     /product="homeobox protein Hox-D3 isoform X1"
                     /protein_id="XP_047300048.1"
                     /db_xref="GeneID:3232"
                     /db_xref="HGNC:HGNC:5137"
                     /db_xref="MIM:142980"
                     /translation="MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYS
                     TPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGG
                     GGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQI
                     FPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRY
                     LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGA
                     AGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEF
                     EPHPMASNGGGFASANLQGSPVYVGGNFVESMAPASGPVFNLGHLSHPSSASVDYSCA
                     AQIPGNHHHGPCDPHPTYTDLSAHHSSQGRLPEAPKLTHL"
ORIGIN      
        1 aggaagtgag cggcggaggc gaggggccta actagtggcc gggcgctgac ctgcctgtcc
       61 tgtctgtttt gtctcgcagt gaaccccaac tacaccggtg gggaacccaa gcggtcccga
      121 acggcctaca cccggcagca agtcctagaa ctggaaaaag aatttcattt taacaggtat
      181 ctgacaaggc gccgtcggat tgaaatcgct cacaccctgt gtctgtcgga gcgccagatc
      241 aagatctggt tccagaaccg gaggatgaag tggaaaaaag atcataagct gcccaacact
      301 aaaggcaggt catcgtcctc atcttcctcc tcatcttgct cctcctcagt cgcccccagc
      361 cagcatttac agccgatggc caaagaccac cacacggacc tgacgacctt atagaagtgg
      421 ggaccctggg cccatctctc cctgcgcacc aggctgagcc gaagctgcgg gggcaggccg
      481 ggcctgctgt cacctcgctg ggctctaagg tcacctggag cctgggggcc ggcccagctc
      541 tctcaggatt cagcagacat tggaggtggc agtgaaggat acagtggtag tcaatgttat
      601 ttgagcaggg tcagcaggcc ctggagcttc ctgagtgcac aatgcagaag gctgcttact
      661 atgaaaaccc aggactgttt ggaggctatg gctacagcaa aactacggac acttacggct
      721 acagcacccc ccaccagccc tacccacccc ctgctgctgc cagctccctg gacactgact
      781 atccaggttc tgcctgctcc atccagagct ctgcccctct gagagcccca gcccacaaag
      841 gagctgaact caatggcagc tgcatgcggc cgggcactgg gaacagccag ggtgggggtg
      901 gtggcagcca gcctcctggt ctgaactcag agcagcagcc accacaaccc cctcctccac
      961 caccgaccct gcccccatct tcacccacca atcctggagg tggagtgcct gccaagaagc
     1021 ccaaaggtgg gcccaatgct tctagctcct cagccaccat cagcaagcag atcttcccct
     1081 ggatgaaaga gtctcgacag aactccaagc agaagaacag ctgtgccact gcaggagaga
     1141 gctgcgagga caagagcccg ccaggcccag catccaagcg ggtacgcacg gcatacacga
     1201 gcgcgcagct ggtggaattg gaaaaggaat tccacttcaa ccgctacttg tgccggccgc
     1261 gccgcgtgga gatggccaac ctgctgaatc tcacggaacg ccagatcaag atctggttcc
     1321 agaaccggcg catgaagtac aagaaggacc agaaggccaa gggcatcctg cactcgccgg
     1381 ctagccagtc ccctgagcgc agcccaccgc tcggcggcgc cgctggccac gtggcctact
     1441 ccggccagct gccgccagtg cccggcctgg cctacgacgc gccctcgccg cctgctttcg
     1501 ccaaatcaca gcccaatatg tacggcctgg ccgcctacac ggcgccactc agcagctgcc
     1561 tgccacaaca gaagcgctac gcagcgccgg agttcgagcc ccatcccatg gcgagcaacg
     1621 gcggcggctt cgccagcgcc aacttgcagg gcagcccggt gtacgtgggc ggcaacttcg
     1681 tcgagtccat ggcgcccgcg tccgggcctg tcttcaacct gggccacctc tcgcacccgt
     1741 cgtcggccag cgtggactac agttgcgccg cgcagattcc aggcaaccac caccatggac
     1801 cttgcgaccc tcatcccacc tacacagatc tctcggccca ccactcgtct cagggacgac
     1861 tgccggaggc tcccaaactg acgcatctgt agcggccgcc gccagcccga actcgcggca
     1921 aaattacctc tcttgctgta gtggtggggt agagggtggg gcccgcgggg cagttcggga
     1981 acccccttcc ccgctcttgc cctgccgccg cctcccgggt ctcaggcctc cagcggcgga
     2041 ggcgcaggcg accgggcctc ccctccatgg gcgtcctttg ggtgactcgc cataaatcag
     2101 ccgcaaggat ccttccctgt aaatttgaca gtgccacata ctgcggacca agggactcca
     2161 atctggtaat ggtgtcccaa aggtaagtct gagacccatc agcggcgcgc cctgcagagg
     2221 gaccagagct tggagagtct tgggcctggc ccgcgtctag cttagtttca gagaccttaa
     2281 tttatattct ccttcctgtg ccgtaaggat tgcatcggac taaactatct gtatttatta
     2341 tttgaagcga gtcatttcgt tccctgatta tttatccttg tctgaatgta tttatgtgta
     2401 tatttgtaga tttatccagc cgagcttagg aattcgcttc caggccgtgg gggccacatt
     2461 tcacctcctt agtccccctg gtctgaacta gttgagagag tagttttgaa cagtcgtaac
     2521 cgtggctggt gtttgtagtt gacataaagg attaagaccg caaattgtcc ttcatgggta
     2581 gagtcaggaa gcccggtggc gtggcacaac acactttggt catttctcaa aaaccacagt
     2641 cctcaccaca gtttattgat ttcaaattgt ctggtactat tggaacaaat atttagaata
     2701 aaaaaatttc ccagtc
//
