LOCUS       XM_047444088            3392 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens homeobox D3 (HOXD3), transcript variant X2,
            mRNA.
ACCESSION   XM_047444088
VERSION     XM_047444088.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000002.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3392
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="2"
     gene            1..3392
                     /gene="HOXD3"
                     /gene_synonym="Hox-4.1; HOX1D; HOX4; HOX4A"
                     /note="homeobox D3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 6 ESTs, 155 long
                     SRA reads, 11 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:3232"
                     /db_xref="HGNC:HGNC:5137"
                     /db_xref="MIM:142980"
     CDS             1270..2568
                     /gene="HOXD3"
                     /gene_synonym="Hox-4.1; HOX1D; HOX4; HOX4A"
                     /codon_start=1
                     /product="homeobox protein Hox-D3 isoform X1"
                     /protein_id="XP_047300044.1"
                     /db_xref="GeneID:3232"
                     /db_xref="HGNC:HGNC:5137"
                     /db_xref="MIM:142980"
                     /translation="MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYS
                     TPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGG
                     GGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQI
                     FPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRY
                     LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGA
                     AGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEF
                     EPHPMASNGGGFASANLQGSPVYVGGNFVESMAPASGPVFNLGHLSHPSSASVDYSCA
                     AQIPGNHHHGPCDPHPTYTDLSAHHSSQGRLPEAPKLTHL"
ORIGIN      
        1 gaaaagcctg aaacataacc aaatccagag tgcctctttc ttcagcaggg ggcaaacata
       61 tgtaagtatt agtcacagaa tgaagactta gctgtccatt tgatatccag taacttttaa
      121 cagagaatga tatataaaat taatcaaaag aaaaattaag tccagctttg ttaagtagat
      181 atcctaccta catacattta agaacaataa tggaaacaat ttctacaaca tagtatcttg
      241 gtattaaggg cctgttcctc atcaagacaa atggcatact cacttatatt ctaaaacaag
      301 acaaaacaaa aagggcaaca acactaccta ccaaagacta attagaagaa ttttaaaatt
      361 tgggttaggc tgtttggtgc aggtggaggg aaaactagtg aatcattctg gtacctgtgg
      421 tcaaatccat taggccacat aagctgtcta gatgatgtgg tacatcatga tgaccaggat
      481 ggaagccagg gagagtttct aggaaggaaa gttgcctgaa agacagatca agaattgaga
      541 ccagggagct gacctatgag ttttctttat caaacagaca aagtgattga atggtattag
      601 ttatacttta actctttagg agcctttcag aagaagtagg gaggcaggga gagaagggaa
      661 acccccataa agaagggaat acaaaagggg taggattttt cttagctttt ttttcttctt
      721 ctaattctgg gtccattcat catgtcatga aaggttctct cattggttgt ggtttgggtg
      781 ggaggtaggg tagaatagat tatccagagc agatgtcaat aatatctatt tatacaatag
      841 atccaaggca aaaataataa agttataaag cattctccac tcacccatgt tccatgcatt
      901 tcaaattcta gatctctttg cccatttcca gtggtatctg tttaaaagta ggggaggtca
      961 aaagtaaaag gtctagaaaa atgtaaatga aagagaagaa acattttcta gcctcaaaat
     1021 gagtctggaa gtctgcaagt cctcctgttg gtgtttatcc cctagttttc tacattgtag
     1081 attttacact gctgattcat agagcttact cagctgattt tcaccctgtc atcgttaagt
     1141 ggactatctg gactttcatg caagatgctg tgattttgaa accaggtcac ctggagcctg
     1201 ggggccggcc cagctctctc aggattcagc agacattgga ggtggcagtg aaggatacag
     1261 tggtagtcaa tgttatttga gcagggtcag caggccctgg agcttcctga gtgcacaatg
     1321 cagaaggctg cttactatga aaacccagga ctgtttggag gctatggcta cagcaaaact
     1381 acggacactt acggctacag caccccccac cagccctacc caccccctgc tgctgccagc
     1441 tccctggaca ctgactatcc aggttctgcc tgctccatcc agagctctgc ccctctgaga
     1501 gccccagccc acaaaggagc tgaactcaat ggcagctgca tgcggccggg cactgggaac
     1561 agccagggtg ggggtggtgg cagccagcct cctggtctga actcagagca gcagccacca
     1621 caaccccctc ctccaccacc gaccctgccc ccatcttcac ccaccaatcc tggaggtgga
     1681 gtgcctgcca agaagcccaa aggtgggccc aatgcttcta gctcctcagc caccatcagc
     1741 aagcagatct tcccctggat gaaagagtct cgacagaact ccaagcagaa gaacagctgt
     1801 gccactgcag gagagagctg cgaggacaag agcccgccag gcccagcatc caagcgggta
     1861 cgcacggcat acacgagcgc gcagctggtg gaattggaaa aggaattcca cttcaaccgc
     1921 tacttgtgcc ggccgcgccg cgtggagatg gccaacctgc tgaatctcac ggaacgccag
     1981 atcaagatct ggttccagaa ccggcgcatg aagtacaaga aggaccagaa ggccaagggc
     2041 atcctgcact cgccggctag ccagtcccct gagcgcagcc caccgctcgg cggcgccgct
     2101 ggccacgtgg cctactccgg ccagctgccg ccagtgcccg gcctggccta cgacgcgccc
     2161 tcgccgcctg ctttcgccaa atcacagccc aatatgtacg gcctggccgc ctacacggcg
     2221 ccactcagca gctgcctgcc acaacagaag cgctacgcag cgccggagtt cgagccccat
     2281 cccatggcga gcaacggcgg cggcttcgcc agcgccaact tgcagggcag cccggtgtac
     2341 gtgggcggca acttcgtcga gtccatggcg cccgcgtccg ggcctgtctt caacctgggc
     2401 cacctctcgc acccgtcgtc ggccagcgtg gactacagtt gcgccgcgca gattccaggc
     2461 aaccaccacc atggaccttg cgaccctcat cccacctaca cagatctctc ggcccaccac
     2521 tcgtctcagg gacgactgcc ggaggctccc aaactgacgc atctgtagcg gccgccgcca
     2581 gcccgaactc gcggcaaaat tacctctctt gctgtagtgg tggggtagag ggtggggccc
     2641 gcggggcagt tcgggaaccc ccttccccgc tcttgccctg ccgccgcctc ccgggtctca
     2701 ggcctccagc ggcggaggcg caggcgaccg ggcctcccct ccatgggcgt cctttgggtg
     2761 actcgccata aatcagccgc aaggatcctt ccctgtaaat ttgacagtgc cacatactgc
     2821 ggaccaaggg actccaatct ggtaatggtg tcccaaaggt aagtctgaga cccatcagcg
     2881 gcgcgccctg cagagggacc agagcttgga gagtcttggg cctggcccgc gtctagctta
     2941 gtttcagaga ccttaattta tattctcctt cctgtgccgt aaggattgca tcggactaaa
     3001 ctatctgtat ttattatttg aagcgagtca tttcgttccc tgattattta tccttgtctg
     3061 aatgtattta tgtgtatatt tgtagattta tccagccgag cttaggaatt cgcttccagg
     3121 ccgtgggggc cacatttcac ctccttagtc cccctggtct gaactagttg agagagtagt
     3181 tttgaacagt cgtaaccgtg gctggtgttt gtagttgaca taaaggatta agaccgcaaa
     3241 ttgtccttca tgggtagagt caggaagccc ggtggcgtgg cacaacacac tttggtcatt
     3301 tctcaaaaac cacagtcctc accacagttt attgatttca aattgtctgg tactattgga
     3361 acaaatattt agaataaaaa aatttcccag tc
//
