LOCUS       XM_017007078            4492 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens helicase like transcription factor (HLTF),
            transcript variant X4, mRNA.
ACCESSION   XM_017007078
VERSION     XM_017007078.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000003.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017007078.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4492
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="3"
     gene            1..4492
                     /gene="HLTF"
                     /gene_synonym="HIP116; HIP116A; HLTF1; RNF80; SMARCA3;
                     SNF2L3; ZBU1"
                     /note="helicase like transcription factor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 39 ESTs, 1544 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 127 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:6596"
                     /db_xref="HGNC:HGNC:11099"
                     /db_xref="MIM:603257"
     CDS             198..3236
                     /gene="HLTF"
                     /gene_synonym="HIP116; HIP116A; HLTF1; RNF80; SMARCA3;
                     SNF2L3; ZBU1"
                     /codon_start=1
                     /product="helicase-like transcription factor isoform X2"
                     /protein_id="XP_016862567.1"
                     /db_xref="GeneID:6596"
                     /db_xref="HGNC:HGNC:11099"
                     /db_xref="MIM:603257"
                     /translation="MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIP
                     PDDFLTSDEEVDSVLFGSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNN
                     VNGNQVGHLKKELAGALAYIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAV
                     SDQLKKHGFKLGPAPKTLGFNLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLF
                     EDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTIT
                     NFSEKDRPENVHGGILADDMGLGKTLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNV
                     NDDSMKLGGNNTSEKADGLSKDASRCSEQPSISDIKEKSKFRMSELSSSRPKRRKTAV
                     QYIESSDSEEIETSELPQKMKGKLKNVQSETKGRAKGSSKVIEDVAFACALTSSVPTT
                     KKKMLKKGACAVEGSKKTDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVY
                     YGPDRIREPALLSKQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNA
                     QQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMG
                     DEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKN
                     EGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVSSNGPSAFSLGNDTP
                     EELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHA
                     KCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIK
                     SLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLS
                     LKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEEN
                     MLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL"
ORIGIN      
        1 agattgttgc agaaggagac ggcgtcgacg tctgactgga ctcgcggcga cttacctttc
       61 agtcgtgcgc tcctgatccg gcgctcggaa tttgtccccg gcttcagggc tgcggggcct
      121 ggaaggaggc gtatcgaggc ggctcgaaaa cgatccaggg gagccgaggc gctcctcttg
      181 tcatcccact cagcgccatg tcctggatgt tcaagaggga tccagtttgg aagtacttgc
      241 agactgtcca gtatggagtt catggaaatt ttccacgcct ctcatatcca actttctttc
      301 cacgttttga attccaagat gttatccctc cagatgactt tctaactagt gatgaagaag
      361 tagattccgt tttatttgga agtttgagag gtcatgtggt tggactacgc tattacacgg
      421 gagtagttaa taataatgaa atggttgcat tacaacgaga tcctaataac ccttatgata
      481 agaatgcaat taaagtaaac aatgtgaatg gaaatcaagt tggccattta aagaaagagc
      541 ttgcaggtgc tttggcctat atcatggaca acaaattggc acaaattgaa ggggtagttc
      601 cttttggtgc aaacaatgct tttaccatgc ctctgcatat gactttttgg ggaaaagaag
      661 aaaatagaaa agcggtttca gatcagttga agaaacatgg atttaaattg ggtcctgcac
      721 caaaaacttt aggattcaat ttggaaagtg gttggggctc tggaagagct ggaccaagct
      781 atagtatgcc agtgcatgct gcagtacaga tgacaactga acagcttaaa acagaatttg
      841 acaaattgtt tgaagattta aaagaagatg ataaaaccca tgaaatggaa ccagctgagg
      901 ctattgaaac accactgctt ccacatcaaa aacaagctct agcttggatg gtgtcacggg
      961 aaaatagcaa agaacttcca ccattctggg aacagcgaaa tgacttatac tataacacaa
     1021 taacaaattt ttctgagaag gaccgaccag aaaatgtcca tggaggaatt ttagctgatg
     1081 atatgggttt gggtaaaact cttacggcca ttgcagtaat ccttaccaac ttccatgatg
     1141 gcagacctct tcctattgaa agagttaaaa agaatctact gaagaaggaa tataatgtta
     1201 acgatgactc tatgaaactt ggaggaaaca ataccagtga aaaggcagat ggactaagca
     1261 aagacgcatc tagatgtagt gaacaaccca gtatttcaga tatcaaggag aagagtaagt
     1321 ttcgcatgtc agaattgtct agctcccgcc ccaaaagaag aaaaactgct gtccagtaca
     1381 tagaaagcag tgattcagag gaaattgaaa caagtgaatt gccgcagaaa atgaaaggca
     1441 aactgaaaaa tgtacagtct gaaactaaag gcagggcgaa aggatcttct aaggttatag
     1501 aagatgtggc atttgcatgt gcattaactt catctgttcc tacaacaaaa aagaaaatgt
     1561 tgaaaaaggg agcttgtgca gtggaggggt caaagaaaac tgatgttgag gagagaccaa
     1621 gaacaacact gatcatctgt ccgctttctg tgttaagcaa ctggattgac cagtttggac
     1681 aacatataaa atcagatgta cacttgaatt tttatgttta ttatggtcct gatcgtatta
     1741 gagaaccggc cttactttca aaacaggata ttgttttgac tacgtataat attttaactc
     1801 atgactatgg aactaaagga gatagtccat tacatagcat aaggtggcta agagtgatcc
     1861 tggatgaagg acatgccata cgaaatccaa atgctcagca gacaaaagct gtacttgact
     1921 tagaatcaga aagaagatgg gttttgacag gtactccaat ccagaattct ttaaaggact
     1981 tgtggtctct tctttccttt ttaaaactta aaccatttat tgatagagaa tggtggcata
     2041 gaacaataca gcgtcctgtc acaatgggag atgaaggagg acttaggcgt ttacagtccc
     2101 taattaaaaa tattacactt agaagaacaa agacaagcaa aattaaagga aaacctgttt
     2161 tggagttacc agaacgtaaa gtatttattc agcacattac actttcagat gaagagagaa
     2221 agatttatca gtctgtgaaa aatgaaggca gagccactat tggaaggtat tttaatgaag
     2281 ggactgtcct ggcacattat gcagatgtcc tgggtctttt gcttagactg cggcaaattt
     2341 gttgccatac ttaccttctt acaaatgcag tgtcttccaa tggcccctca gccttttctc
     2401 taggaaatga tacacctgaa gaactgagaa agaagttaat aaggaagatg aagttaattc
     2461 tgagctcagg ttcagatgag gaatgtgcaa tttgcctgga ttctttaaca gttcctgtga
     2521 taacacattg tgcacatgta ttttgtaaac cctgtatttg ccaagtcatt cagaatgagc
     2581 agccacatgc taaatgccct ttatgcagaa atgatataca tgaagataat ttattagaat
     2641 gtcctccaga agaattagca cgtgacagtg agaaaaagtc tgatatggaa tggacatcca
     2701 gttcaaagat taatgcgcta atgcacgcat tgactgactt aagaaagaag aatcccaaca
     2761 taaaaagttt ggttgtttct cagtttacaa cattcctgtc tttaatagaa ataccactta
     2821 aagcctctgg atttgtgttt actcgtttgg atggttccat ggcccaaaag aaaagagttg
     2881 aatcaattca gtgttttcaa aacactgaag caggatctcc aactataatg cttctgtcct
     2941 taaaagcagg tggagttggt ttgaatctgt ctgcagcttc tcgagtgttt ttaatggatc
     3001 cagcctggaa tcctgctgct gaagatcagt gctttgacag atgccataga cttggtcaga
     3061 agcaagaagt tatcatcaca aaattcattg taaaggactc tgttgaagaa aatatgctga
     3121 aaatacaaaa caaaaagaga gaacttgcag caggagcctt tggaactaaa aaaccaaatg
     3181 ctgacgaaat gaaacaagcc aaaattaatg aaatcagaac attaattgac ttataatttg
     3241 tgggatttta gtaagaagac tactatatgt gagaggcgtg atatctggat ggaagttggg
     3301 ctggatgatc tccaaagtcg tttcaactct taaagacatc ttaatcctga atgtaaacaa
     3361 ttgttatgtg tttagaatca gaatttgatt ttgaacttga gtaattcatc cttacagcta
     3421 tctgtagaat tagtcatctt ttttcttttc tttttttttt acttttttgt taataagcaa
     3481 acttatttgc tgcagaattt gggttgactc ctgagcatat ttaaaacaaa gaagctagaa
     3541 atttagcagt cagattaggt aggtggtttt atttcaaagg gaaactttaa tccaaagaaa
     3601 gattaattac tctaacaaac aagagaagct tcatgtttga tgatacagat ttaagaatac
     3661 ctgagactta agagtgttgg aagtcatttg atagaaagat gagatcggag acaatgttgt
     3721 gttatagggc acacattgaa ggtatatgcc aaatctctca ccagataagt ccttttctcc
     3781 ctgtgccgtt ttcttgctca aagggaacag tgaattagcc agctagaatc ttcctggtcc
     3841 ctttttgagg cagtagcagg taaggaaagg gctgattttc atcaaaacca agacctttct
     3901 gcagggatga tagtggaata ataatgtggg attagcccgc tagcattagg agcagttggg
     3961 aagttacctg gtagatcaag cattacacac aaaaaatcaa gttgatcaga gtatgggttc
     4021 tccatatagc aatacttcag tgagattaag tataaacagt ttttggcaaa aaacaacaca
     4081 gtctactctt tctgcttaca aagacaaagc cttacaaact cactatgaag gtaaagggag
     4141 gacagcttgc ttctttgccc agacatttac aaagttgttt ttaaaacaca ctcataagta
     4201 agtttggcaa gttgtttaaa aaatgtctct ttgttttgta cagttctgtt agatgttgtt
     4261 atattttaaa agtttaattt aaaaaattta atttgtcctt cctaagaagg ataaatatat
     4321 aaaaaagcca ctggaatgaa aacttcctat atgctatgct gttgtcttat tattatatag
     4381 aaaaataact ttagaaaaat attgaagaca ttgtattacc acttgtgatt caaacaattt
     4441 tgtggttaaa actggatttt aaatttaaaa atcaataaaa atttcaaatg tt
//
