LOCUS       NM_198181               4305 bp    mRNA    linear   PRI 06-AUG-2024
DEFINITION  Homo sapiens golgin A6 family like 9 (GOLGA6L9), transcript variant
            1, mRNA.
ACCESSION   NM_198181 NM_001282503 XM_005272452 XM_351026
VERSION     NM_198181.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4305)
  AUTHORS   Kim,D.K., Weller,B., Lin,C.W., Sheykhkarimli,D., Knapp,J.J.,
            Dugied,G., Zanzoni,A., Pons,C., Tofaute,M.J., Maseko,S.B.,
            Spirohn,K., Laval,F., Lambourne,L., Kishore,N., Rayhan,A.,
            Sauer,M., Young,V., Halder,H., la Rosa,N.M., Pogoutse,O.,
            Strobel,A., Schwehn,P., Li,R., Rothballer,S.T., Altmann,M.,
            Cassonnet,P., Cote,A.G., Vergara,L.E., Hazelwood,I., Liu,B.B.,
            Nguyen,M., Pandiarajan,R., Dohai,B., Coloma,P.A.R., Poirson,J.,
            Giuliana,P., Willems,L., Taipale,M., Jacob,Y., Hao,T., Hill,D.E.,
            Brun,C., Twizere,J.C., Krappmann,D., Heinig,M., Falter,C., Aloy,P.,
            Demeret,C., Vidal,M., Calderwood,M.A., Roth,F.P. and
            Falter-Braun,P.
  TITLE     A proteome-scale map of the SARS-CoV-2-human contactome
  JOURNAL   Nat Biotechnol 41 (1), 140-149 (2023)
   PUBMED   36217029
REFERENCE   2  (bases 1 to 4305)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC243919.2.
            
            On Dec 28, 2020 this sequence version replaced NM_198181.3.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA1968968,
                              SAMEA2148093 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000618348.2/ ENSP00000481078.1
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-348               AC243919.2         204773-205120
            349-468             AC243919.2         206787-206906
            469-528             AC243919.2         207529-207588
            529-609             AC243919.2         207774-207854
            610-697             AC243919.2         208519-208606
            698-1266            AC243919.2         208991-209559
            1267-1327           AC243919.2         209826-209886
            1328-1430           AC243919.2         210924-211026
            1431-4305           AC243919.2         211236-214110
FEATURES             Location/Qualifiers
     source          1..4305
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="15"
                     /map="15q25.2"
     gene            1..4305
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /note="golgin A6 family like 9"
                     /db_xref="GeneID:440295"
                     /db_xref="HGNC:HGNC:37229"
     exon            1..348
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /inference="alignment:Splign:2.1.0"
     CDS             265..1563
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /note="isoform 1 is encoded by transcript variant 1; golgi
                     autoantigen, golgin subfamily a, 6-like 9; golgin
                     subfamily A member 6-like protein 9; golgin A6 family-like
                     20; putative golgin subfamily A member 6-like protein 20"
                     /codon_start=1
                     /product="golgin subfamily A member 6-like protein 9
                     isoform 1"
                     /protein_id="NP_937824.3"
                     /db_xref="CCDS:CCDS45326.1"
                     /db_xref="GeneID:440295"
                     /db_xref="HGNC:HGNC:37229"
                     /translation="MWPQPRLPPHPAMSEKTQQGKLAAAKKKLKAYWQRKSPGIPAGA
                     NRKKKINGSSPDTFTSGGYHSPGDSATGIYGEGRASSTTLQDLESQYQELAVALDSSS
                     AIISQLTENINSLVRTSKEEKKHEIHLVQKLGRSLFKLKNQTAEPLAPQPPAGPSKME
                     QLQDETNHLRKELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQEERLCEQ
                     EERLCEQEERLREQEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQERLLERERLLD
                     EVEELLEQERLRQQDERLWQQETLRELERLRELERMLELGWEALYEQRAEPRSGFEEL
                     NNENKSTLQLEQQVKELEKSGGAEEPRGSESAAAARPVAGAPVPQGAWMCGQAGWTPQ
                     EHPGLSGEAVGTGEAAGGAGEAACHSFRAAENRELNITII"
     exon            349..468
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /inference="alignment:Splign:2.1.0"
     exon            469..528
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /inference="alignment:Splign:2.1.0"
     exon            529..609
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /inference="alignment:Splign:2.1.0"
     exon            610..697
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /inference="alignment:Splign:2.1.0"
     exon            698..1266
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /inference="alignment:Splign:2.1.0"
     exon            1267..1327
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /inference="alignment:Splign:2.1.0"
     exon            1328..1430
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /inference="alignment:Splign:2.1.0"
     exon            1431..4305
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4271..4276
                     /regulatory_class="polyA_signal_sequence"
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /note="hexamer: ATTAAA"
     polyA_site      4290
                     /gene="GOLGA6L9"
                     /gene_synonym="GOLGA6L20"
                     /note="major polyA site"
ORIGIN      
        1 cctctcccct ctctctgagt gggcggggac agcggttgca tgggcagctt tccttatgat
       61 gctacaggtc cctctggaca tgctgcgcct ggccacgcct cctttccctt tcatctttct
      121 cactgaccaa tgggcttgga acattaaggc cacgccccta ttctgcgttc cattggtgcc
      181 ctggttacgc cacctgtggc tcagttgcac agctgcctgg taggtgactg gaggcattga
      241 gcagtgctca ctggtatttc gctgatgtgg ccccaacccc gcctccctcc ccaccccgcg
      301 atgtcagaaa aaacacaaca ggggaaattg gccgcagcca agaaaaagtt aaaagcatat
      361 tggcagagga agagccctgg cattccagca ggagctaaca ggaaaaagaa aatcaatggc
      421 agtagccctg acacattcac ttctggtggt taccactcac ctggggattc agcaacaggt
      481 atctacgggg agggccgtgc atcctctact accctgcagg atctggagag ccagtaccaa
      541 gaactagcag tagccctgga ttcaagctcc gcaataatca gtcaactcac tgaaaacatc
      601 aattcactgg ttcgcacatc taaggaggag aagaagcatg agatacatct ggtacagaag
      661 cttgggagga gcttgttcaa actcaaaaac cagacggctg aacccctggc cccacagccc
      721 ccagcagggc catctaagat ggagcagcta caagatgaga ccaaccacct aaggaaggag
      781 ctagagagtg tgggaagaca gctccaggct gaggtggaaa acaatcagat gttgagtctc
      841 ctgaacagga gacaggagga gaggctacgt gaacaggagg agaggctacg tgaacaggag
      901 gagaggctgt gtgaacagga ggagaggctg tgtgaacagg aggagaggct acgtgaacag
      961 gaggagaggc tgtgtgaaca ggagaagctg ccagggcagg agaggctgct ggaagaggtg
     1021 gagaagctgt tagaacagga gaggcggcag gaggagcagg agaggctgct ggagagggag
     1081 aggctgctgg acgaggtgga ggagctcctg gagcaggaga ggcttcggca acaggatgag
     1141 aggctgtggc agcaggagac tctgcgggag ctggagaggc tgcgggagct ggagaggatg
     1201 ctggagctgg ggtgggaagc cctgtacgag cagcgggccg agccacgcag cggcttcgag
     1261 gagctgaaca acgagaacaa gagcacactg cagttggagc agcaagtaaa ggagctggag
     1321 aagtcgggtg gagctgaaga gccaagaggc tccgagtctg cagcagcagc cagaccagta
     1381 gctggagccc cagtcccaca aggagcttgg atgtgcggac aagcagggtg gactccccag
     1441 gagcacccag gcttgagtgg agaagctgtt ggtacaggag aggcggcagg aggagcagga
     1501 gaggctgcat gccattcttt tcgggctgcc gagaacaggg agctaaacat caccatcatc
     1561 taagagcggg tcaagaaatt gaaaaaaaaa aacaaaacat ttaaggggtt aatatcctac
     1621 acaattcatt tacttcattt gaatgttaga gccacttatg tttgtgtttc taatttatag
     1681 tttaaattta tttgtgtttc taatttatag tttaaattta tttgtttcta atttatagtt
     1741 taaatttatt tgtgtttcta atttatagtt taaatttatt tttgtttcta atttataatt
     1801 taaatttatt tgtaaaaagt taaatgagag tgggtctttc tctcatgttc actctggcat
     1861 cttttagcat ttctttaatt tgataattat aggacgttag catgcatatc gagtttgccc
     1921 ttatgtggtg ggagttcaaa cacacaaaga cccactgtat gcacacaact gttcttgctg
     1981 gtttgggata ggctgccatg cttttttaat gttagtacag cctgtatatt cattacggaa
     2041 ttcagataaa atttccttat gttctgctgt tatgtttgat cgaatcctaa tcacagtgag
     2101 ctcttcatta gctcaatatg tggtttgccc tctggaaaca gcctttcccc ctttttctgt
     2161 gtattgggga tgggagtaat aacattttgg ggaggttttt aaatctccca gaagaggaaa
     2221 gtggcctgct ttggcaggtg tgtgcaggat agaatatgtt tcatttgttc cggtgccaag
     2281 aatgagcgct gtactacggt agttccctta ggatttgtat gtgctctagg ctcatgaaga
     2341 tactgcctca tgagctgtgg cagttgtact cttttttgat gacctgaaaa gggattattt
     2401 ctgaggaatg aaaggctccc atcatgactg tggatgtgga aaaccttttc tagctgagag
     2461 catttatatc tacaatacat tttaaagtca gagttcatgt tccctgtttt aatcacatga
     2521 ctacatgtcc cagtacacaa aagggcactg gttggcgttc tccttaatgt atttagtaaa
     2581 gatcagaaga aatcctttaa gagtttaaat gcccctggaa caggcatata caggctctag
     2641 tcaagaatga attcgagtga aggaaagctg tgtgacacct ggcattcctc tgtgttcatg
     2701 gagcttattt gaggctagaa gatggatttt accatctaga cctctctggc taatagctag
     2761 tcttcaacca tctgacatag gaatttactt cttttccttg aatggagaac actttaaaaa
     2821 taataacaaa cattattata aactaatata tgtgagagta cttagttgaa acaaaaagga
     2881 gttttagtag acagtattat actacatttg aaaatcaagg agcagtttat gcaacgtaaa
     2941 acgtttacaa actgcagcac aatctactgt tcgtgaatgt caaagtgtca tgaggaaagt
     3001 gtctatacaa tcacagagtt atatttcctc acaaagttct ttacaaagag tgaaatatgt
     3061 ttttatacct ctcagtttca gttagaggca tattttgtgt aatatttatg gcttaaaatg
     3121 gactaaaggt cctgttcttg ccttgtctga acttgccgct tttgcattct ttgagttcag
     3181 tttaaagaca gttactttaa gcccatttta aaccctcagg ctagaaatcg taccactgtt
     3241 aattagccac attatttggt ctaacagttt atcattctga aactgagctt acctaataca
     3301 ttgataaatt atttcaaagg tatttttata gttcaaatcg cttcactttt accctgacac
     3361 gtataaatga ctaggaatga ccttcagata gcatttagca actgtaacca atctgacaat
     3421 aatgtgttca tcaggtacct gtggattaaa tcacatactg gcatatttaa gctgaatgtc
     3481 agtctgaaaa ataaatgtac tatattaact caaataccac tctctgtgta ggtattttgt
     3541 catatgttta agaaaaagct aaagagaatg gaaatcctat gacaataact atgacaataa
     3601 ctatgacaag tctttcttca aagtgcatgc agtcttttgc agtacctcat tcagccaagt
     3661 atttgttctc tacctcattc agtataaggc agcctttaat ttgcttagaa ggcaacatta
     3721 gaaggttaga gttcagcagg aacatagaat tttaaaatgt gacttcaact gaataaattt
     3781 gaatttctgt agggagtaaa gaatcaaaac acctatttaa agactgcaaa atatgataat
     3841 tatttttaaa gtaattgatt aaacctggta ggttttccca aaatgaaaaa caatcagttc
     3901 taaaaccaaa gctgattttt agaaaatgtg aaaatgtaaa tcaaccctat ccataataga
     3961 ttctctaaaa ctttatctta cagtcacttt caaataacta ttcaaaaatg taactgctat
     4021 attaacgtct taaaataatt taaaacattt taaaatatga atactgtagt ttaaaacaaa
     4081 gaatctaggg gaaggaaaag tagacaaaga aatgccaatt ccagtccaaa gctgtatttg
     4141 ccaagttttc ttagaatgac ttttaccgat ttatgaattc ttatacacag aatgcataat
     4201 ggaaatactg atttttgtct aaagtggcat tattgactgc tgctgtgatg ctactataat
     4261 gtaatacatt attaaattgt ttcaaggtgc tgttttgcct aaaaa
//
