LOCUS       NM_001164465            4452 bp    mRNA    linear   PRI 09-FEB-2024
DEFINITION  Homo sapiens golgin A6 family like 10 (GOLGA6L10), transcript
            variant 1, mRNA.
ACCESSION   NM_001164465 XM_001726896 XM_006720643
VERSION     NM_001164465.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4452)
  AUTHORS   Zody,M.C., Garber,M., Sharpe,T., Young,S.K., Rowen,L., O'Neill,K.,
            Whittaker,C.A., Kamal,M., Chang,J.L., Cuomo,C.A., Dewar,K.,
            FitzGerald,M.G., Kodira,C.D., Madan,A., Qin,S., Yang,X., Abbasi,N.,
            Abouelleil,A., Arachchi,H.M., Baradarani,L., Birditt,B., Bloom,S.,
            Bloom,T., Borowsky,M.L., Burke,J., Butler,J., Cook,A.,
            DeArellano,K., DeCaprio,D., Dorris,L. 3rd, Dors,M., Eichler,E.E.,
            Engels,R., Fahey,J., Fleetwood,P., Friedman,C., Gearin,G.,
            Hall,J.L., Hensley,G., Johnson,E., Jones,C., Kamat,A., Kaur,A.,
            Locke,D.P., Madan,A., Munson,G., Jaffe,D.B., Lui,A., Macdonald,P.,
            Mauceli,E., Naylor,J.W., Nesbitt,R., Nicol,R., O'Leary,S.B.,
            Ratcliffe,A., Rounsley,S., She,X., Sneddon,K.M., Stewart,S.,
            Sougnez,C., Stone,S.M., Topham,K., Vincent,D., Wang,S.,
            Zimmer,A.R., Birren,B.W., Hood,L., Lander,E.S. and Nusbaum,C.
  TITLE     Analysis of the DNA sequence and duplication history of human
            chromosome 15
  JOURNAL   Nature 440 (7084), 671-675 (2006)
   PUBMED   16572171
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC243919.2.
            
            On or before Apr 12, 2014 this sequence version replaced
            XM_006720643.1, NM_001164465.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK302092.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA1965299,
                                           SAMEA1966682 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000610657.2/ ENSP00000479362.1
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-184               AC243919.2         124249-124432       c
            185-304             AC243919.2         122467-122586       c
            305-364             AC243919.2         121784-121843       c
            365-445             AC243919.2         121518-121598       c
            446-533             AC243919.2         120766-120853       c
            534-1372            AC243919.2         119545-120383       c
            1373-1433           AC243919.2         119218-119278       c
            1434-1536           AC243919.2         118075-118177       c
            1537-4452           AC243919.2         114950-117865       c
FEATURES             Location/Qualifiers
     source          1..4452
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="15"
                     /map="15q25.2"
     gene            1..4452
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /note="golgin A6 family like 10"
                     /db_xref="GeneID:647042"
                     /db_xref="HGNC:HGNC:37228"
     exon            1..184
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /inference="alignment:Splign:2.1.0"
     CDS             101..1669
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /note="isoform 1 is encoded by transcript variant 1; golgi
                     autoantigen, golgin subfamily a, 6-like 10; putative
                     golgin subfamily A member 6-like protein 10; golgin A6
                     family-like 18"
                     /codon_start=1
                     /product="golgin subfamily A member 6-like protein 10
                     isoform 1"
                     /protein_id="NP_001157937.2"
                     /db_xref="CCDS:CCDS45325.2"
                     /db_xref="GeneID:647042"
                     /db_xref="HGNC:HGNC:37228"
                     /translation="MWPQPRLPPHPAMSEKTQQGKLAAAKKKLKAYWQRKSPGIPAGA
                     NRKKKVNGSSPDTATSGGYHSPGDSATGIYGEGRASSTTLQDLESQYQELAVALDSSS
                     AIISQLTENINSLVRTSKEEKKHEIHLVQKLGRSLFKLKNQTAEPLAPEPPAGPSKVE
                     QLQDETNHLRKELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLHEQEERLHEQ
                     EERLCEQEERLREQEERLCEQEERLREQEERLCEQEERLREQEERLCEQEERLREQEE
                     RLREQEERLCEQEERLCEQEERLREQEERLCEQEERLCEQEERLCEQEKLPGQERLLE
                     EVEKLLEQERRQEEQERLLERERLLDEVEELLEQERLRQQDERLWQQETLRELERLRE
                     LERLRELERMLELGWEALYEQRAEPRSGFEELNNENKSTLQLEQQVKELEKSGGAEEP
                     RGSESAAAARPVPGAPVPQGAWMCGQAGWTPQEHPGLSGEAVGTGEAAGGAEEAACHS
                     FRAAENRELNITII"
     exon            185..304
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /inference="alignment:Splign:2.1.0"
     exon            305..364
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /inference="alignment:Splign:2.1.0"
     exon            365..445
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /inference="alignment:Splign:2.1.0"
     exon            446..533
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /inference="alignment:Splign:2.1.0"
     exon            534..1372
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1433
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /inference="alignment:Splign:2.1.0"
     exon            1434..1536
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /inference="alignment:Splign:2.1.0"
     exon            1537..4452
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3653..3658
                     /regulatory_class="polyA_signal_sequence"
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /note="hexamer: AATAAA"
     polyA_site      3677
                     /gene="GOLGA6L10"
                     /gene_synonym="GOLGA6L18"
                     /note="major polyA site"
ORIGIN      
        1 gcgttccatt ggtgccctgg ttacgccacc tgtggctcag ttgcacagct gcctggtagg
       61 tgactggagg cattgagcag tgctcactgg tatttcgctg atgtggcccc aaccccgcct
      121 ccctccccac cccgcgatgt cagaaaaaac acaacagggg aaattggccg cagccaagaa
      181 aaagttaaaa gcatattggc agaggaagag ccctggcatt ccagcaggag ctaacaggaa
      241 aaagaaagtc aatggcagta gccctgacac agccacttct ggtggttacc actcacctgg
      301 ggattcagca acaggtatct acggggaggg ccgtgcatcc tctactaccc tgcaggatct
      361 ggagagccag taccaagaac tagcagtggc cctggattca agctccgcaa taatcagtca
      421 actcactgaa aacatcaatt cactggttcg cacatctaag gaggagaaga agcatgagat
      481 acatctggta cagaagcttg ggaggagctt gttcaaactc aaaaaccaga cggctgaacc
      541 cctggcccca gagcccccag cagggccatc taaggtggag cagctacaag atgagaccaa
      601 ccacctaagg aaggagctag agagtgtggg aagacagctc caggctgagg tggaaaacaa
      661 tcagatgttg agtctcctga acaggagaca ggaggagagg ctacgtgaac aggaggagag
      721 gctacatgaa caggaggaga ggctacatga acaggaggag aggctgtgtg aacaggagga
      781 gaggctacgt gaacaggagg agaggctgtg tgaacaggag gagaggctac gtgaacagga
      841 ggagaggctg tgtgaacagg aggagaggct acgtgaacag gaggagaggc tgtgtgaaca
      901 ggaggagagg ctacgtgaac aggaggagag gctacgtgaa caggaggaga ggctatgtga
      961 acaggaggag aggctgtgtg aacaggagga gaggctacgt gaacaggagg agaggctatg
     1021 tgaacaggag gagaggctat gtgaacagga ggagaggctg tgtgaacagg agaagctgcc
     1081 agggcaggag aggctgctgg aagaggtgga gaagctgtta gaacaggaga ggcggcagga
     1141 ggagcaggag aggctgctgg agagggagag gctgctggac gaggtggagg agctcctgga
     1201 gcaggagagg cttcggcaac aggatgagag gctgtggcag caggagactc tgcgggagct
     1261 ggagaggctg cgggagctgg agaggctgcg ggagctggag aggatgctgg agctggggtg
     1321 ggaagccctg tacgagcagc gggccgagcc acgcagcggc ttcgaggagc tgaacaacga
     1381 gaacaagagc acactgcagt tggagcagca agtaaaggag ctggagaagt cgggtggagc
     1441 tgaagagcca agaggctccg agtctgcagc agcagccaga ccagtacctg gagccccagt
     1501 cccacaagga gcttggatgt gcggacaagc agggtggact ccccaggagc acccaggctt
     1561 gagtggagaa gctgttggta caggagaggc ggcaggagga gcagaagagg ctgcatgcca
     1621 ttcttttcgg gctgcggaga acagggagct aaacatcacc atcatctaag agcgggtcaa
     1681 gaaattgaaa aaaaaaaaaa caaaacattt aaggggttaa tatcctacac aattcattta
     1741 cttcatttga atgttagagc cacttatgtt tatttgtgtt tctaatttat agtttaaatt
     1801 tatttgtgtt tctaatttat aatttaaatt tatttgtgtt tctaatttat agtttaaatt
     1861 tatttgtgtt tctaatttat aatttaaatt tatttgtaaa aagttaaatg agagtgggtc
     1921 tttctctcat gttcactctg gcatctttta gcattttttt aatttgataa ttataggacg
     1981 ttagcatgca tatcgagttt gcccttatgt ggtgggagtt caaacacaca aagacccact
     2041 gtatgcacac aactgttctt gctggtttgg gataggctgc catgcttttt taatgttagt
     2101 acagcctgta tattcattac ggaattcaga taaaatttcc ttatgttctg ctgttatgtt
     2161 tgatcgaatc ctaatcacag tgagctcttc attagctcaa tatgtggttt gccctcaagt
     2221 gcgcggtcta ttactttgta atatgccact gtgagtactg acatttacag ttgtttaaag
     2281 gtggagcact ggaaacagcc tttccccctt tttctgtgta ttggggatgg gagtaataac
     2341 attttgggga ggtttttaaa tctcccagaa gaggaaagtg gcctgctttg gcaggtgtgt
     2401 gcaggataga atatgtttca tttgttccgg tgccaagaat gagcgctgta ctacggtagt
     2461 tcccttagga tttgtatgtg ctctgggctc atgaagatac tgcctcatga gctgtggcag
     2521 ttgtactctt ttttgatgac ctgaaaaggg attatttctg aggaatgaaa ggctcccatc
     2581 atgactgtgg atgtggaaaa ccttttctag ctgagagcat ttatatctac aatacatttt
     2641 aaagtcagag ttcatgttcc ctgttttaat cacatgacta catgtcccag tacacaaaag
     2701 ggcactggtt ggcgttctcc ttaatgtatt tagtaaagat cagaagaaat cctttaagag
     2761 tttaaatgcc cctggaacag gcatatacag gctctagtca agaatgaatt cgagtgaagg
     2821 aaagctgtgt gacacctggc attcctctgt gttcatggag cttatctgag gctagaagat
     2881 ggattttacc atctagacct ctctggctaa tagctagtct tcaaccatct gacataggaa
     2941 tttacttctt ttccttgaat ggagaacact ttaaaaataa taacaaacat tattataaac
     3001 taatatatgt gagagtactt agttgaaaca aaaaggagtt ttagtagaca gtattatact
     3061 acatttgaaa atcaaggagc agtttatgca acgtaaaatg tttacaaact gcagcgcaat
     3121 ctactgtttg tgactgtcaa agtgtcatga ggaaagtgtc tatacaatca cagagttata
     3181 tttcctcaca aagttcttta cgaagagtga aatatgtttt tatacctctc agtttcagtt
     3241 agaggcatat tttgtgtaat atttatggct taaaatggac taaaggtcct gttcttgcct
     3301 tgtctgaact tgccgctttt gcattctttg agttcagttt aaagacactt actttaactc
     3361 cattttaaac cctcgggcta gaaatcgtac cactgttaat tagccacgtt atttggtcta
     3421 acagtttttg tttatcattc tgaaactgag cttatctaat acattgataa attatttcaa
     3481 aggtattttt atagttcaaa tcgcttcact tttaccctga cacgtataaa tgactaggaa
     3541 tgaccttcag atagcgttta gcaactgtaa ccaatctgac aataatgtgt tcatcaggta
     3601 cctgtggatt aaatcacata ctggcatatt taagctgaat gtcagtctga aaaataaatg
     3661 tactatatta actcaaatac cactctctgt gtaggtattt tgtcatatgt ttaagaaaaa
     3721 gctaaagaga atggaaatcc tatgacaata actcaagtct ttcttcaaag tgcatgcagt
     3781 ctcttgcagt acctcattca gccaagtatt tgttctcttc ctcattcagt ataaggcagc
     3841 tttcaatttg cttagaaggc aatattagaa ggttagagtt cagcagaaag agagaatttt
     3901 aaaatgtgag tttgactgaa taaatttgaa tttctgtagg aagtaaagaa tcaaaatacc
     3961 tatttaaaga ctgcaatata tgataattat ttttaaagta atagattaaa cctgataggt
     4021 tttcctgaaa tgaaaaacaa tcagttctaa aaccaaagct gatttttaga aaatgtgaaa
     4081 atgtaaatca accctatcca aaatagattc tctaaaactt tatcttacag tcactttcaa
     4141 ataactattc aaaaatgtaa ctgttaaatt aatgtcttaa aataatttaa aacattttaa
     4201 aatacgaata ctgtagctta aaacaaagaa tctaggggaa ggaaaagtag agaaagaaat
     4261 gccaattcca gtccaaagct gtatttgcca agttttctta gaacgacttt taccgattta
     4321 tgaattctta tacacagaat gcatgatgga aatactgatt tttgtctaaa gtggcattat
     4381 tgactgcttc tgtgatgcta ctgtaatgta ataaattatt agattgtttc aaggtgctgt
     4441 tttgcctaaa aa
//
