LOCUS       NM_001145224            3178 bp    mRNA    linear   PRI 16-FEB-2024
DEFINITION  Homo sapiens golgin A6 family member D (GOLGA6D), mRNA.
ACCESSION   NM_001145224 XM_370876
VERSION     NM_001145224.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3178)
  AUTHORS   Zody,M.C., Garber,M., Sharpe,T., Young,S.K., Rowen,L., O'Neill,K.,
            Whittaker,C.A., Kamal,M., Chang,J.L., Cuomo,C.A., Dewar,K.,
            FitzGerald,M.G., Kodira,C.D., Madan,A., Qin,S., Yang,X., Abbasi,N.,
            Abouelleil,A., Arachchi,H.M., Baradarani,L., Birditt,B., Bloom,S.,
            Bloom,T., Borowsky,M.L., Burke,J., Butler,J., Cook,A.,
            DeArellano,K., DeCaprio,D., Dorris,L. 3rd, Dors,M., Eichler,E.E.,
            Engels,R., Fahey,J., Fleetwood,P., Friedman,C., Gearin,G.,
            Hall,J.L., Hensley,G., Johnson,E., Jones,C., Kamat,A., Kaur,A.,
            Locke,D.P., Madan,A., Munson,G., Jaffe,D.B., Lui,A., Macdonald,P.,
            Mauceli,E., Naylor,J.W., Nesbitt,R., Nicol,R., O'Leary,S.B.,
            Ratcliffe,A., Rounsley,S., She,X., Sneddon,K.M., Stewart,S.,
            Sougnez,C., Stone,S.M., Topham,K., Vincent,D., Wang,S.,
            Zimmer,A.R., Birren,B.W., Hood,L., Lander,E.S. and Nusbaum,C.
  TITLE     Analysis of the DNA sequence and duplication history of human
            chromosome 15
  JOURNAL   Nature 440 (7084), 671-675 (2006)
   PUBMED   16572171
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC068338.14.
            
            On Dec 29, 2020 this sequence version replaced NM_001145224.2.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR18074969.2634621.1,
                                           SRR18074967.752875.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000434739.4/ ENSP00000391085.3
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               AC068338.14        92785-92909         c
            126-245             AC068338.14        90975-91094         c
            246-326             AC068338.14        88971-89051         c
            327-365             AC068338.14        88077-88115         c
            366-416             AC068338.14        87765-87815         c
            417-498             AC068338.14        87583-87664         c
            499-605             AC068338.14        87380-87486         c
            606-692             AC068338.14        86261-86347         c
            693-800             AC068338.14        86045-86152         c
            801-888             AC068338.14        85765-85852         c
            889-1397            AC068338.14        84855-85363         c
            1398-1466           AC068338.14        84510-84578         c
            1467-1542           AC068338.14        83104-83179         c
            1543-1634           AC068338.14        82580-82671         c
            1635-1737           AC068338.14        81913-82015         c
            1738-1841           AC068338.14        81726-81829         c
            1842-1995           AC068338.14        81483-81636         c
            1996-3178           AC068338.14        80214-81396         c
FEATURES             Location/Qualifiers
     source          1..3178
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="15"
                     /map="15q24.2"
     gene            1..3178
                     /gene="GOLGA6D"
                     /note="golgin A6 family member D"
                     /db_xref="GeneID:653643"
                     /db_xref="HGNC:HGNC:32204"
     exon            1..125
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     CDS             42..2123
                     /gene="GOLGA6D"
                     /note="golgi autoantigen, golgin subfamily a, 6D; putative
                     golgin subfamily A member 6D"
                     /codon_start=1
                     /product="golgin subfamily A member 6D"
                     /protein_id="NP_001138696.1"
                     /db_xref="CCDS:CCDS45308.1"
                     /db_xref="GeneID:653643"
                     /db_xref="HGNC:HGNC:32204"
                     /translation="MWPQPYLPPHPMMLEESRQNKLAAAKKKLKEYQQRKSPGIPAGA
                     KTKKKKTDSSPETTTSGGGHSPGDSQYQELAVALESSSVTINQLNENIESLKQQKKQV
                     EHQLEEAKKTNNEIHKAQMEQLETINILTLEKADLKTTLYHTKRAARHFEEESKDLAG
                     RLQYSLQHIQELERALCAVSTQQQEEDRSSSCREAVLQRRLQQTIKERALLNAHVTQV
                     TESLKQVQLERDEYAKHIKGERARWQERMWKMSVEARTLKEEKKRDIHRIQELERSLS
                     ELKNQMAEPPSLAPPAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKE
                     QKQRLQEQEEMLREQEAQRVREQERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQE
                     ERLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCSFE
                     DLNNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQLETQLSLVALPGEGDGGQHLD
                     SEEEEAPRPTPNIPEDLESREATSSFMDLPKEKADGTEQVERRELGFVQPSGVTDGMR
                     ESFTVYESQGAVPNTRHQEMEDVIRLAQKEEEMKVKLLELQELVLPLVGNHEGHGKFL
                     IAAQNPADEPTPGAPAPQELGAAGEQDVFYEVSLDNNVEPAPGVAREGSPHNNPTVQQ
                     IVQLSPVMQDT"
     exon            126..245
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            246..326
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            327..365
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            366..416
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            417..498
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            499..605
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            606..692
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            693..800
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            801..888
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1397
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            1398..1466
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            1467..1542
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            1543..1634
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            1635..1737
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            1738..1841
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            1842..1995
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
     exon            1996..3178
                     /gene="GOLGA6D"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcacacag cagccttgta ggtgactgga ggtgttcgct gatgtggccc caaccctacc
       61 tccctcccca ccccatgatg ttagaagaat ctcgacagaa taaattggca gcagccaaga
      121 aaaagctaaa agaatatcag caaaggaaga gccctggtat tccagcagga gcaaagacaa
      181 aaaagaaaaa aactgacagt agccctgaga caaccacttc cggtggtggc cactcacctg
      241 gggatagcca gtaccaagaa ctagcagtag ccctggagtc aagctcagtg acaatcaatc
      301 agctcaatga aaacatagaa tcattgaaac agcagaagaa acaagtggaa catcagctgg
      361 aagaagcaaa gaaaacaaac aatgaaatac acaaagcaca aatggagcag ttagagacaa
      421 tcaacatcct cacattggaa aaggcagact tgaagaccac cctttaccat actaaacgtg
      481 ctgcccgaca cttcgaagaa gagtccaagg atctggctgg ccgcctgcaa tactccttac
      541 agcatattca agaattggag cgggctctct gtgctgtgtc tacacagcag caggaagagg
      601 acaggtcctc gagctgcaga gaagcggtcc tccagcggcg gttacagcag accataaagg
      661 agcgggcgct gctgaacgca cacgtgacac aggtgacaga gtcactaaaa caagtccagc
      721 tagagcgaga cgaatatgct aaacacataa aaggagagag ggcccggtgg caggagagga
      781 tgtggaaaat gtcggtggag gctcgaacat tgaaggaaga gaagaagcgt gacatacatc
      841 ggatacagga gctggagagg agcttgtccg aactcaaaaa ccagatggct gagcccccat
      901 ccctggcacc cccagcagtg acctctgtgg tggaacagct acaagatgag gccaaacacc
      961 tgaggcagga ggtggaaggt ctggagggaa agctccagtc ccaggtggaa aacaatcagg
     1021 ccttgagtct ccttagcaag gaacaaaagc agagactcca ggagcaggag gagatgctcc
     1081 gagagcagga ggcgcagaga gtgcgggagc aggagagact gtgtgaacaa aacgagaggc
     1141 ttcgggagca gcagaagacg ctacaggagc agggtgagag gctgcgaaag caggagcaga
     1201 ggctacgcaa acaggaggag aggctgcgaa aggaggagga gaggctgcaa aagcaggaaa
     1261 agaggctgtg ggaccaggag gagaggctgt ggaagaagga ggagaggcta caaaagcagg
     1321 aggagaggct cgcgctctcc cagaaccaca agctcgacaa gcagctggcc gagccacagt
     1381 gcagcttcga ggatctgaac aacgagaaaa agagcgcact gcagttggag cagcaagtaa
     1441 aggagctgca ggagaagcta gacgaggagc acctagaagc tgccagccag cggaaccaac
     1501 agctagagac ccagctaagc ctcgtggctc tccctggaga aggagatgga ggacaacatc
     1561 tggacagtga ggaggaggag gcgcctcggc ccacgccaaa catcccagag gacctggaga
     1621 gccgggaggc cacgagcagc tttatggacc tcccgaagga gaaggcggac gggacggagc
     1681 aggtggagag acgagagctt ggattcgtcc agccttctgg agtgacagac ggcatgagag
     1741 agtccttcac cgtatatgaa agccaggggg cagtgccaaa cacgcggcac caggagatgg
     1801 aggatgtcat caggctggcc cagaaggagg aggagatgaa ggtgaagctg ctggagctgc
     1861 aagagttggt gttgcccctt gtgggcaacc atgaggggca tggcaaattc ctcatcgctg
     1921 cccagaaccc tgctgatgag cccactccag gggccccagc cccccaggaa cttggggctg
     1981 ccggtgagca ggatgttttt tatgaagtga gcctggacaa caacgtggag cctgcaccag
     2041 gagtggccag ggagggttct ccccataaca accccactgt acagcagatc gtgcagctgt
     2101 ctcctgtcat gcaggacacc taggagcacc caggcttgcc cagcaaaccc tgcgtgccat
     2161 tcttctacca ggcagccgag aacagggaga taaacatcat catcttctaa gagctggtca
     2221 agaaatttaa aacaacaaca acaacaaaaa gttacggggt tcatctccta cacaattcat
     2281 ttactccatt tgaatgctag agccactcac ttttatttgt gtttctaatt taccgtttaa
     2341 atttatttgt aaaaagttaa gggagagttg gtctttccct gatgttcttt ctggcatcct
     2401 ttagcatttt tatttttaat ttgataattg taggtcatta gtatgcatat cgagtttgcc
     2461 cttaggtggt gggaattcaa acacacaaag acccactaat ttgcacaaaa ctattctggc
     2521 tggtttggaa caggctgcca tgctttttta atgttattgc agcatgtata ttcattccag
     2581 aattcagata aaatgtgctt atgttctgct attacgtttg atcgaatcct aaccacagtg
     2641 agctcttcat tagctcaata tgtggtttgc cctcaattga gcactgttta ttactttgta
     2701 atatgccact gtgagtactg acatttagag ttgtttaaag gccaagaact ggaaacagcc
     2761 ttttccctat tttctgtgta ttggggatgg gagtaataac attttgggga gctttttaaa
     2821 tctcacagaa gaggaaagtg gcctgctctg gcaggtgtgt gcaggataga gtgtgtttca
     2881 tttgttctgg tgccaagaat gagcgctgca ctatggtagt tcccttagga tttgtatgtg
     2941 ctctgggctc atgaagatat tgcatcatga gctgcagcag ttgtaccctt tcttgatgac
     3001 ctaaaaaggg attatttctg aggaatgaaa ggctcccatc attgactgtg gatgtggaaa
     3061 accttttcta gcttagagca tttatatcta caatacattt taaagtcaga gttcatgtta
     3121 cctgttttaa tcacatgagt atatgtccca gtacacaaaa gggcactggt tggcattc
//
