LOCUS       NM_001164404            5603 bp    mRNA    linear   PRI 17-FEB-2024
DEFINITION  Homo sapiens golgin A6 family member C (GOLGA6C), mRNA.
ACCESSION   NM_001164404 XM_496076
VERSION     NM_001164404.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 5603)
  AUTHORS   Zody,M.C., Garber,M., Sharpe,T., Young,S.K., Rowen,L., O'Neill,K.,
            Whittaker,C.A., Kamal,M., Chang,J.L., Cuomo,C.A., Dewar,K.,
            FitzGerald,M.G., Kodira,C.D., Madan,A., Qin,S., Yang,X., Abbasi,N.,
            Abouelleil,A., Arachchi,H.M., Baradarani,L., Birditt,B., Bloom,S.,
            Bloom,T., Borowsky,M.L., Burke,J., Butler,J., Cook,A.,
            DeArellano,K., DeCaprio,D., Dorris,L. 3rd, Dors,M., Eichler,E.E.,
            Engels,R., Fahey,J., Fleetwood,P., Friedman,C., Gearin,G.,
            Hall,J.L., Hensley,G., Johnson,E., Jones,C., Kamat,A., Kaur,A.,
            Locke,D.P., Madan,A., Munson,G., Jaffe,D.B., Lui,A., Macdonald,P.,
            Mauceli,E., Naylor,J.W., Nesbitt,R., Nicol,R., O'Leary,S.B.,
            Ratcliffe,A., Rounsley,S., She,X., Sneddon,K.M., Stewart,S.,
            Sougnez,C., Stone,S.M., Topham,K., Vincent,D., Wang,S.,
            Zimmer,A.R., Birren,B.W., Hood,L., Lander,E.S. and Nusbaum,C.
  TITLE     Analysis of the DNA sequence and duplication history of human
            chromosome 15
  JOURNAL   Nature 440 (7084), 671-675 (2006)
   PUBMED   16572171
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC068338.14.
            
            On Dec 29, 2020 this sequence version replaced NM_001164404.1.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA1968968,
                              SAMEA2148093 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000300576.6/ ENSP00000300576.5
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-349               AC068338.14        117062-117410       c
            350-469             AC068338.14        115252-115371       c
            470-550             AC068338.14        113252-113332       c
            551-589             AC068338.14        112358-112396       c
            590-640             AC068338.14        112046-112096       c
            641-722             AC068338.14        111864-111945       c
            723-829             AC068338.14        111661-111767       c
            830-916             AC068338.14        110536-110622       c
            917-1024            AC068338.14        110320-110427       c
            1025-1112           AC068338.14        110040-110127       c
            1113-1621           AC068338.14        109131-109639       c
            1622-1690           AC068338.14        108786-108854       c
            1691-1766           AC068338.14        107380-107455       c
            1767-1858           AC068338.14        106856-106947       c
            1859-1961           AC068338.14        106189-106291       c
            1962-2065           AC068338.14        106002-106105       c
            2066-2219           AC068338.14        105759-105912       c
            2220-5603           AC068338.14        102289-105672       c
FEATURES             Location/Qualifiers
     source          1..5603
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="15"
                     /map="15q24.2"
     gene            1..5603
                     /gene="GOLGA6C"
                     /note="golgin A6 family member C"
                     /db_xref="GeneID:653641"
                     /db_xref="HGNC:HGNC:32206"
     exon            1..349
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     CDS             266..2347
                     /gene="GOLGA6C"
                     /note="golgi autoantigen, golgin subfamily a, 6C; putative
                     golgin subfamily A member 6C"
                     /codon_start=1
                     /product="golgin subfamily A member 6C"
                     /protein_id="NP_001157876.1"
                     /db_xref="CCDS:CCDS58388.1"
                     /db_xref="GeneID:653641"
                     /db_xref="HGNC:HGNC:32206"
                     /translation="MWPQPYLPPHPMMLEESRQNKLAAAKKKLKEYQQRKSPGIPAGA
                     KTKKKKTDSSPETTTSGGGHSPGDSQYQELAVALESSSVTINQLNENIESLKQQKKQV
                     EHQLEEAKKTNNEIHKAQMEQLETINILTLEKADLKTTLYHTKRAARHFEEESKDLAG
                     RLQYSLQRIQELERALSAVSTQQQEEDRSSSCREAVLQRRLQQTIKERALLNAHVTQV
                     TESLKQVQLERDEYAKHIKGERARWQERMWKMSVEARTLKEEKKRDIHRIQELERSLS
                     ELKNQMAEPPSLAPPAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKE
                     QKQRLQEQEEMLREQEAQRVREQERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQE
                     ERLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCSFE
                     DLNNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQLETQLSLVALPGEGDGGQHLD
                     SEEEEAPRPTPNIPEDLESREATSSFMDLPKEKADGTEQVERRELGFVQPSGVTDGMR
                     ESFTVYESQGAVPNTRHQEMEDVIRLAQKEEEMKVKLLELQELVLPLVGNHEGHGKFL
                     IAAQNPADEPTPGAPAPQELGAAGEQDDFYEVSLDNNVEPAPGAAREGSPHDNPPVQQ
                     IVQLSPVMQDT"
     exon            350..469
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            470..550
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            551..589
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            590..640
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            641..722
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            723..829
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            830..916
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            917..1024
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            1025..1112
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1621
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            1622..1690
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            1691..1766
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            1767..1858
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            1859..1961
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            1962..2065
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            2066..2219
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     exon            2220..5603
                     /gene="GOLGA6C"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5576..5581
                     /regulatory_class="polyA_signal_sequence"
                     /gene="GOLGA6C"
                     /note="hexamer: AATAAA"
     regulatory      5584..5589
                     /regulatory_class="polyA_signal_sequence"
                     /gene="GOLGA6C"
                     /note="hexamer: ATTAAA"
     polyA_site      5599
                     /gene="GOLGA6C"
                     /note="major polyA site"
     polyA_site      5603
                     /gene="GOLGA6C"
                     /note="major polyA site"
ORIGIN      
        1 ccctctccca gagtaggcag gccccgcccc tctccccaag tgggcaggga cagcagtcgc
       61 atgggcagct ttccttgtga tgtcacaggt tcctctgggc acactgctgc ctggccacgc
      121 ctcctttccc tttcatcttt ctcattgacc aatgggattg gagcattaag gccacacccc
      181 tattctgcat tctagtgtgg ccctggttac gcctcctctg gctcagtcac acagcagcct
      241 tgtaggtgac tggaggtgtt cgctgatgtg gccccaaccc tacctccctc cccaccccat
      301 gatgttagaa gaatctcgac agaataaatt ggcagcagcc aagaaaaagc taaaagaata
      361 tcagcaaagg aagagccctg gtattccagc aggagcaaag acaaaaaaga aaaaaactga
      421 cagtagccct gagacaacca cttccggtgg tggccactca cctggggata gccagtacca
      481 agaactagca gtagccctgg agtcaagctc agtgacaatc aatcagctca atgaaaacat
      541 agaatcattg aaacagcaga agaaacaagt ggaacatcag ctggaagaag caaagaaaac
      601 aaacaatgaa atacacaaag cacaaatgga gcagttagag acaatcaaca tcctcacatt
      661 ggaaaaggca gacttgaaga ccacccttta ccatactaaa cgtgctgccc gacacttcga
      721 agaagagtcc aaggatctgg ctggccgcct gcaatactcc ttacagcgta ttcaagaatt
      781 ggagcgggct ctctctgctg tgtctacaca gcagcaggaa gaggacaggt cctcgagctg
      841 cagagaagcg gtcctccagc ggcggttaca gcagaccata aaggagcggg cgctgctgaa
      901 cgcacacgtg acacaggtga cagagtcact aaaacaagtc cagctagagc gggacgaata
      961 tgctaaacac ataaaaggag agagggcccg gtggcaggag aggatgtgga aaatgtcggt
     1021 ggaggctcga acattgaagg aagagaagaa gcgtgacata catcggatac aggagctgga
     1081 gaggagcttg tccgaactca aaaaccagat ggctgagccc ccatccctgg cacccccagc
     1141 agtgacctct gtggtggaac agctacaaga tgaggccaaa cacctgaggc aggaggtgga
     1201 aggtctggag ggaaagctcc agtcccaggt ggaaaacaat caggccttga gtctccttag
     1261 caaggaacaa aagcagagac tccaggagca ggaggagatg ctccgagagc aggaggcgca
     1321 gagagtgcgg gagcaggaga gactgtgtga acaaaacgag aggcttcggg agcagcagaa
     1381 gacgctacag gagcagggtg agaggctgcg aaagcaggag cagaggctac gcaaacagga
     1441 ggagaggctg cgaaaggagg aggagaggct gcaaaagcag gaaaagaggc tgtgggacca
     1501 ggaggagagg ctgtggaaga aggaggagag gctacaaaag caggaggaga ggctcgcgct
     1561 ctcccagaac cacaagctcg acaagcagct ggccgagcca cagtgcagct tcgaggatct
     1621 gaacaacgag aaaaagagcg cactgcagtt ggagcagcaa gtaaaggagc tgcaggagaa
     1681 gctagacgag gagcacctag aagctgccag ccagcggaac caacagctag agacccagct
     1741 aagcctcgtg gctctccctg gagaaggaga tggaggacaa catctggaca gtgaggagga
     1801 ggaggcgcct cggcccacgc caaacatccc agaggacctg gagagccggg aggccacgag
     1861 cagctttatg gacctcccga aggagaaggc ggacgggacg gagcaggtgg agagacgaga
     1921 gcttggattc gtccagcctt ctggagtgac agacggcatg agagagtcct tcaccgtata
     1981 tgaaagccag ggggcagtgc caaacacgcg gcaccaggag atggaggatg tcatcaggct
     2041 ggcccagaag gaggaggaga tgaaggtgaa gctgctggag ctgcaagagt tggtgttgcc
     2101 ccttgtgggc aaccatgagg ggcatggcaa attcctcatc gctgcccaga accctgctga
     2161 tgagcccact ccaggggccc cagcccccca ggaacttggg gctgccggtg agcaggatga
     2221 tttttatgaa gtgagcctgg acaacaacgt ggagcctgca ccaggagcgg ccagggaggg
     2281 ttctccccat gacaaccccc cggtacagca gatcgtgcag ctgtctcctg tcatgcagga
     2341 cacctaggag cacccaggct tgcccagcaa accctgcgtg ccattcttct accaggcagc
     2401 cgagaacagg gagataaaca tcatcatctt ctaagagctg gtcaagaaat ttaaaacaac
     2461 aacaacaaaa agttacgggg ttcatctcct acacaattca tttactccat ttgaatgcta
     2521 gagccactca catttatttg tgtttctaat ttaccgttta aatttatttg taaaaagtta
     2581 agggagagtt ggtctttccc tgatgttctt tctggcatcc tttagcattt ttatttttaa
     2641 tttgataatt gtaggtcatt agtatgcata tcgagtttgc ccttaggtgg tgggaattca
     2701 aacacacaaa gacccactaa tttgcacaaa actattctgg ctggtttgga acaggctgcc
     2761 atgctttttt aatgttattg cagcatgtat attcattcca gaattcagat aaaatgtgct
     2821 tatgttctgc tattacgttt gatcgaatcc taaccacagt gagctcttca ttagctcaat
     2881 atgtggtttg ccctcaattg agcactgttt attactttgt aatatgccac tgtgagtact
     2941 gacatttaga gttgtttaaa ggccaagaac tggaaacagc cttttcccta ttttctgtgt
     3001 attggggatg ggagtaataa cattttgggg agctttttaa atctcacaga agaggaaagt
     3061 ggcctgctct ggcaggtgtg tgcaggatag agtgtgtttc atttgttctg gtgccaagaa
     3121 tgagcgctgt actatggtag ttcccttagg atttgtatgt gctctgggct catgaagata
     3181 ttgcatcatg agctgcagca gttgtaccct ttcttgatga cctaaaaagg gattatttct
     3241 gaggaatgaa aggctcccat cattgactgt ggatgtggaa aaccttttct agcttagagc
     3301 atttatatct acaatacatt ttaaagtcag agttcatgtt acctgtttta atcacgagta
     3361 tatgtcccag tacacaaaag ggcactggtt ggcattcttc ttaaggtatt tagtgaagat
     3421 cataagaaat cctttaagag tttaaatgtc cctggaagag gcatacaggc tctagtcaag
     3481 aatgaatttg agtgaaggaa agctgtgtga cacctggcct tcctctatgt tcatggagct
     3541 tctttgaggc tagaagattg attttatcat ctagacctct ctggctaata cctattcttc
     3601 agccacatta gttactctga cataggaatt tacttctttt ctttgaatgg aaaacacttt
     3661 aaaaataata acaaccatta ttataaacca atatatgtga gagtacttag ttgaaacaaa
     3721 aaggagtttt agtagacagt attatactac acatgaaaat caaggcgaag tttatgcaac
     3781 ttaaaatgtt tacaagctgc agtgcaatct aatgtttgtg aatgtccaag tattatgaga
     3841 aaaagtgtct atacaatgac agacttatgt ttcctcacaa agttcttcac aaagagtgaa
     3901 atatgttttt atacctctca gtttcagtta gaggcatatt ttgtgccata tttatgttaa
     3961 tgtgcctata cgtgatgagt gaattatttc agtcatacat tgcctaaatc ataactttaa
     4021 gatgcttggg aaagaatcaa cagctaaaag ttcatgaagt tctaatgtct gtgttccaaa
     4081 atacgtcaca gtattaggat gcagggagag atgtgtgtgc gctccctggg gtgggcattt
     4141 ctagttacta gaccatctcc atttttagca tttggcatcc tcatgatact tttatacata
     4201 tgacattaat aggagagcaa taatacgatt ttacagatgg aataacagat gtgcctgcat
     4261 tcagtgaaag agtgcaaata ttaagtcctt gtgacttcaa ctgactcttc caaattgtat
     4321 gaatttatca atgtattaga taaactcagt tccagaatta taaagaaaaa ctgttagacc
     4381 aacgaatgtg gctaattaac agtaggacga tttctagccc gagggtttaa aatggacttc
     4441 aagtcctgtt cttgcctttt attttctgaa cttgccactt ttgcattctt tgagttcagt
     4501 ttaaagacag tttgagtcca atttagaccc tcgggctaga aatcatacca ctgttaatta
     4561 gccaccttat ttggtctaac agtttttctt tataattctg aaactgggtt tacctaatac
     4621 attgataaat tatttcaaag gtatttttat agttcaaatc acttcacttt taccctgata
     4681 aatataaatg actaggaatg atcttcagct agcctttagc acctgcaacc aatctgacaa
     4741 taatgtgttc atcaggtacc tgtggattaa atcacacacc ggcatattta agctgaatgt
     4801 cagtctggaa aatgaatgta ctatattaac tgaaatacca ctctttgtgt aggtattctg
     4861 tcatatattt aagaaaaatt aaatagcatg taaatcatat aacaataact taagtctttc
     4921 ttcaaagtgc atgtggtcct ttgcaatacc tcattcagcc aagtatttgt tctcttcctc
     4981 attcagttta aggcagcttt caatttgctt agaaggcaac attagaaggg tagagtttaa
     5041 tcagaaacat agaattttaa agtgtgggtt caactgaata aatttgaatt tctgtaggaa
     5101 gtaaagaatt aaaaatctat ttaaagattg caatatataa tcatttttaa agtatttgtt
     5161 taacctgatg ggttttccag aaatgaaaac aagtcagttc taaaaccaaa gctgatattt
     5221 agaaaatgtg aaaatataaa tcagccctat gcataatata gtttctctaa aactttatct
     5281 taaagagtca ttttaaaaga atataactat tcaaaaatgt aactgctatc ttaatgtttt
     5341 gaaataagtt aaaacacttt aaaatatgaa tactgtagtt tgaaagaaag aaactggggg
     5401 aaggaaaagt agagaaagaa atgccaattc caatgcaagg ctttatttgc caagttttct
     5461 tagaatgact tttaccagtt tatgaattct tgtaaacaga atgtataata gaaatactga
     5521 aacactgttg cctaaagtgg cattgttgac tgctactgtg atgctactgt aatgtaataa
     5581 attattaaat tgttgcaaag tgc
//
