LOCUS       NM_001001343            2083 bp    mRNA    linear   PRI 06-JUN-2024
DEFINITION  Homo sapiens fibronectin type III domain containing 9 (FNDC9),
            mRNA.
ACCESSION   NM_001001343
VERSION     NM_001001343.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DA173480.1, BC022570.1, DB567325.1 and AC016571.7.
            
            On Nov 23, 2018 this sequence version replaced NM_001001343.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660809.93486.1,
                                           SRR1803614.80331.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968540, SAMEA2142670
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000312349.5/ ENSP00000310594.4
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-312               DA173480.1         45-356
            313-1136            BC022570.1         309-1132
            1137-1650           BC022570.1         1135-1648
            1651-2082           DB567325.1         18-449
            2083-2083           AC016571.7         41251-41251         c
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="5"
                     /map="5q33.3"
     gene            1..2083
                     /gene="FNDC9"
                     /gene_synonym="C5orf40"
                     /note="fibronectin type III domain containing 9"
                     /db_xref="GeneID:408263"
                     /db_xref="HGNC:HGNC:33547"
     exon            1..137
                     /gene="FNDC9"
                     /gene_synonym="C5orf40"
                     /inference="alignment:Splign:2.1.0"
     exon            138..2083
                     /gene="FNDC9"
                     /gene_synonym="C5orf40"
                     /inference="alignment:Splign:2.1.0"
     CDS             145..819
                     /gene="FNDC9"
                     /gene_synonym="C5orf40"
                     /note="fibronectin type-III domain-containing protein
                     C5orf40"
                     /codon_start=1
                     /product="fibronectin type III domain-containing protein
                     9"
                     /protein_id="NP_001001343.2"
                     /db_xref="CCDS:CCDS4337.1"
                     /db_xref="GeneID:408263"
                     /db_xref="HGNC:HGNC:33547"
                     /translation="MNIEVGNISYTGAIISWSSSEPCLEDYYHIMYRPNWNSIFSGYL
                     RYSFHHEEKVPRTISSVVLEHLAPSTLYFLCISCKKAAFPYRHYCTMFHTLDKSPLAP
                     GSSLVDPQISLWVLMAILLACFTAVLAFICLQFWCVRCHEPRWSYRAGHMEEANGLVR
                     WPEEAPDLGQREEDLQGLPLVEMPRKNSRDGAELDPEANQDAPDAGALQRGGGDPPAI
                     LPHCGE"
     regulatory      1629..1634
                     /regulatory_class="polyA_signal_sequence"
                     /gene="FNDC9"
                     /gene_synonym="C5orf40"
                     /note="hexamer: AATAAA"
     polyA_site      1650
                     /gene="FNDC9"
                     /gene_synonym="C5orf40"
     regulatory      2062..2067
                     /regulatory_class="polyA_signal_sequence"
                     /gene="FNDC9"
                     /gene_synonym="C5orf40"
                     /note="hexamer: AATAAA"
     polyA_site      2083
                     /gene="FNDC9"
                     /gene_synonym="C5orf40"
                     /note="major polyA site"
ORIGIN      
        1 ggcagtggga ttactcagtg ttgagagaaa caacacggaa agcccagagc agaggaggga
       61 gaaggcccca ttctctcagc tttaatctac tgcacctcgg agggcagagc tctaaccaga
      121 cacgctgcaa gcatcagaat cgggatgaac atcgaggtgg ggaacatttc ttatacagga
      181 gccatcatct cctggtcgtc ctcggagccc tgcctggagg actattacca tattatgtac
      241 aggcccaact ggaacagcat cttctctggc tatcttcgct acagcttcca ccacgaggag
      301 aaggtgcctc gaacgatcag ctccgtggtg ctggaacatc ttgccccttc cactctctac
      361 ttcctgtgca tcagctgtaa gaaggctgcc ttcccttaca ggcactactg caccatgttc
      421 cacaccctgg ataagagtcc gctggctcct ggaagctccc tggtagaccc ccagatctcc
      481 ctttgggtgc tgatggccat tctgctggcc tgcttcacag ccgtcttggc cttcatctgc
      541 ctccagttct ggtgtgtccg ttgccatgag ccgcgatggt cttacagggc tggccacatg
      601 gaggaggcca atgggttggt gagatggcca gaggaggccc cggatcttgg tcagagggag
      661 gaagacctgc aggggctccc cctggtggaa atgccacgca agaactccag agatggagct
      721 gaactggatc ccgaagccaa ccaggatgcc cctgatgcgg gtgccttaca gagggggggt
      781 ggtgacccac ccgctatact gcctcattgt ggggaatgag agtggggagg agagcgcccg
      841 catcatgtag cctaaagctt tccacacagt aggtcgtttg tacaaatgtg tctatagact
      901 acccatttct ctcccatcaa acgtcactgc tattgtaggt cacctgggtt ggatgaatgc
      961 cccatgacaa agcttctcaa gctggaaaat gtatccccca gggtatgcca aggcacaaac
     1021 gaggcatctc agcagcagcg tccactcgga ggacacagtt aagaattgaa agcattgttt
     1081 taacattaaa acaaacatgg atatgttata aagtagaaag caaaaatttg catgacaaat
     1141 aaaacacagc acttgaagga aacacttgag ttacaagtag gctctcagag gtacactttt
     1201 gggcaaaggt agatgtccag tttcctctgc ccttgagggg attatttgga aataatttgg
     1261 gattatttgg aaataatttg tgagaaccct tgctctggag tgttttccaa cttttaggca
     1321 atcacatacc accgctctct attttttaaa accatggatt atcttcacta ttattaataa
     1381 tactttcctt taaattgact cattttttaa gcgtaaactt attttcaaag acagccttat
     1441 attactccat aagtgaaaaa ccagcaccct cctgctgcaa acagaaggga agagacataa
     1501 gaataaacat catgaaaaca agataatatt aaataatctg acttagcttc tattgcctgc
     1561 cagtgattct gagcttaatg cctgcttgct tgtctttgat aaaaagggag atccagtgtt
     1621 ggagaggtaa taaagacata ttagcaccaa tatttgtctt tctccttgat atagcataag
     1681 gtttgaaaga gaatcgaaaa gggaagtgct gtttttactt tgcgagtcag tgttagttaa
     1741 atgccatgtc tgtgaaccac ctcaaatgct gtcagtcagc ttcccttgat ttgagaaaat
     1801 tgtcttgacc agactaggca ggctgttctg gagaagacgc ctgtactctc caagcatcat
     1861 ccaagacctt cccagtaccc tcttatatct atagagcaca aaatcccaga atcacaggac
     1921 gacactgcag tgaatcaact aagaaacagc aggagctgag aagccaagac gagaagcccc
     1981 acatccctat tcccttgcct acctcatgca ttccctgctc ggcacccaga cttttgcccc
     2041 cattcctgct acttgtgaac aaataaagat tcatatactc aca
//
