LOCUS       NM_001318932            3274 bp    mRNA    linear   PRI 01-AUG-2024
DEFINITION  Homo sapiens family with sequence similarity 216 member B
            (FAM216B), transcript variant 1, mRNA.
ACCESSION   NM_001318932 XM_005266260
VERSION     NM_001318932.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3274)
  AUTHORS   Cadore,N.A., Lord,V.O., Recamonde-Mendoza,M., Kowalski,T.W. and
            Vianna,F.S.L.
  TITLE     Meta-analysis of Transcriptomic Data from Lung Autopsy and Cellular
            Models of SARS-CoV-2 Infection
  JOURNAL   Biochem Genet 62 (2), 892-914 (2024)
   PUBMED   37486510
  REMARK    GeneRIF: Meta-analysis of Transcriptomic Data from Lung Autopsy and
            Cellular Models of SARS-CoV-2 Infection.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DB221838.1, AK098238.1, AL138819.9 and CB240730.1.
            
            On Nov 22, 2018 this sequence version replaced NM_001318932.1.
            
            Transcript Variant: This variant (1) is the longer transcript.
            Variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DB241403.1, AK098238.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000313851.3/ ENSP00000319336.1
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-55                DB221838.1         35-89
            56-1384             AK098238.1         25-1353
            1385-2566           AL138819.9         7928-9109
            2567-3272           AK098238.1         2525-3230
            3273-3274           CB240730.1         17-18               c
FEATURES             Location/Qualifiers
     source          1..3274
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="13"
                     /map="13q14.11"
     gene            1..3274
                     /gene="FAM216B"
                     /gene_synonym="C13orf30"
                     /note="family with sequence similarity 216 member B"
                     /db_xref="GeneID:144809"
                     /db_xref="HGNC:HGNC:26883"
     exon            1..81
                     /gene="FAM216B"
                     /gene_synonym="C13orf30"
                     /inference="alignment:Splign:2.1.0"
     exon            82..194
                     /gene="FAM216B"
                     /gene_synonym="C13orf30"
                     /inference="alignment:Splign:2.1.0"
     CDS             96..515
                     /gene="FAM216B"
                     /gene_synonym="C13orf30"
                     /codon_start=1
                     /product="protein FAM216B"
                     /protein_id="NP_001305861.1"
                     /db_xref="CCDS:CCDS9386.1"
                     /db_xref="GeneID:144809"
                     /db_xref="HGNC:HGNC:26883"
                     /translation="MGQNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFY
                     SIMRIYNSRPQWEALQTRYIHSLQHQQLLGYITQREALSYALVLRDSTKRASAKVAPQ
                     RTIPRKTSAMTRRCPSVLPVSVVLPRAQSKRRQVLRN"
     exon            195..315
                     /gene="FAM216B"
                     /gene_synonym="C13orf30"
                     /inference="alignment:Splign:2.1.0"
     exon            316..3274
                     /gene="FAM216B"
                     /gene_synonym="C13orf30"
                     /inference="alignment:Splign:2.1.0"
     regulatory      617..622
                     /regulatory_class="polyA_signal_sequence"
                     /gene="FAM216B"
                     /gene_synonym="C13orf30"
                     /note="hexamer: TATAAA"
     polyA_site      640
                     /gene="FAM216B"
                     /gene_synonym="C13orf30"
                     /note="major polyA site"
     regulatory      3253..3258
                     /regulatory_class="polyA_signal_sequence"
                     /gene="FAM216B"
                     /gene_synonym="C13orf30"
                     /note="hexamer: AATAAA"
     polyA_site      3274
                     /gene="FAM216B"
                     /gene_synonym="C13orf30"
                     /note="major polyA site"
ORIGIN      
        1 agcatataaa cagagtccgc gtaagaaaac tacactgaat aggaatggca gcttttaaaa
       61 gtgggggaac tacagtatag ggtataggat aaacgatggg acaaaactgg aaaagacaac
      121 aaaagctttg gaatgttcca caacttcctt ttattcgagt tcctccctcc atctatgaca
      181 cttccttact aaaggccctc aaccaagggc aacagcgcta cttttacagc attatgagga
      241 tttacaactc caggccccag tgggaggccc tgcagacccg ctacattcac agccttcagc
      301 accaacagct gcttggctat attactcaac gggaagcctt gtcttatgct cttgtactta
      361 gagattcaac caagagagcc tcagccaagg tagctcctca aagaaccatt ccccggaaaa
      421 cttcagccat gacaagaaga tgtccatcag tactacctgt atctgtggtt ctacctaggg
      481 cccaaagtaa aaggcgccaa gtgctcagga actgagactt ggcagcattt tcagaaacag
      541 gaagtttgcc catgtatccc tggtatctag tgggtgcttt gtgcatattt gttgaatgac
      601 agtgaataat ttctaatata aaccccagac ctaaaaataa tctctgattc atataaattt
      661 tgccagcaag accaagaggt ttaagagcaa tggagccgag agtaagcaag cctttccaca
      721 taacatccgt agagtaaaag gacttttaaa gctttcaaag taaaagttta ctttggatta
      781 gaacctccta gagaagtccc caaaacagtg aaaggggaca agtgaccaga aagggccagg
      841 tcctctgtca ctgggtgacc atttctagca aactatcatg tatacatttt gaaaatatac
      901 aaaacaacac aggattaaca ctgatcatag agggcttaca aaatcatatc atcccagcaa
      961 caattggcct gtgcatttcc ttcctctcct cttccccatc aggcaatggc atttaattta
     1021 gccccaaagc tcttctagtt ctcacctggc ttgatcactt tgtgtcatct tgaaacatgc
     1081 acttatcagt ctaccacagc tgaattgatt ttatggagct gtaactggcc ttgacatggg
     1141 taagagaatt catgcacaca tctttccctg gcagctgaag aaacactctt aaaagaatat
     1201 gaaataaccc cgaagacttt atttcatgtc caacctttct gtggcctcaa atgttttaag
     1261 caaagcacat aaaactatac taagcagtga gtcagttcat catacaaagg catagtattg
     1321 cattagttat atttaatggt tattttcatc accagagatt ttgtgtgtgt gtgtgtgtgt
     1381 gtgtgtgtgt gtgttaaaaa tcagtcacca gtgctcatgt aaagtcaaaa caaaaaaatg
     1441 cttcttcctc atcattgtaa aatacgtcac cccattcaaa tcagctgatg cctatgaaag
     1501 gaattggttg aggtggaata taaattttat tgacaaggga tgtgctaaca ttgatctgaa
     1561 aggaatatgc tgcattatta tcagaaaaaa aatcattatc ttctctttgc aatcatgaac
     1621 atataagata taaaaattgt catgagattc tgaacactag tattgaggtc cagcactact
     1681 tccaagctcc tatctgactt ttctttggga ggaatgggaa gtgtggttgg cccactagtc
     1741 tgataagaag tcttggtgaa gctaatactg accttgctgg ggtcattcac ttaatcataa
     1801 agaagcttct tgacctctgc aaattctggc cctgacatgt attctaaata cctttacagt
     1861 tctaagtgag aaattgttac ataggcttag aagaagaaaa gactccagtg ggactgggat
     1921 gagctgcgtg gtagccctca taaagcagag aggttggtgg gagacctaac ttggcctata
     1981 ctagccttcc cattgttttc acaatgggcc ttttatcccc tctgaactgc ttgcctgcac
     2041 ttttatctta gacttttttt tttgatgagc ataggtattt gctgtgtaag ccttatctag
     2101 tgatgcagaa tatcaaggag gccacttaca attctaagct gcatccctgt atcaaaaatc
     2161 tcagaagcac cttgcatctg atagaggctt gtaagagcag attgacaggt gaatgtcaca
     2221 ggtccataag aaggacaaat agatctaagt tgggcaaaag attctatttg ttggttctcc
     2281 cttctaagat gataatatgc ccctgcactt gagaccttac ttgaaactta aagaaatgtg
     2341 attggttatg gtgctgggag aaaggggtgc acctgggagg acactgagaa agataaacaa
     2401 aggggaagga agagaggaca acctgtaact tttagaaaag gctactactt ttaactgttg
     2461 gagaaaatgc tattgcttgc actcacaatg tcaatataca ttatcagaac ttaagtcctg
     2521 gagatcagag actgtttcac ctgaaattgc tagcacctag aatggccccc ggttgcggta
     2581 ggcaatcaat aatactcttt gaataataat gaggttttca aagattctgc aagtcagact
     2641 ggcctctggc tttgtgatat tattctagag tcccagtaac ccacaattgt tgatgaggag
     2701 tagcagtaga atatcaagga caggtgatga gacaacaagt ctatcccgca aagggcaggg
     2761 aatagagggt acactggaaa gaatttgaaa acaataataa agctgactac aagttggtct
     2821 attttttatt accaccatga gccagcaatt ctaaataata tcagtgataa agtattcatc
     2881 ccccaaaata ttttattgaa ctaggttcta aacaatttct gaggttactg ttgagtttta
     2941 aataatacat atatgtaagc ttcaaagtag cacatttgta ctgtttttct tcaataatca
     3001 ttttactcca catggaaact aattcaggga atatcctgct atatagttgg ctctcagtac
     3061 atatggtgtc agctcatgtg tctccagccc ctgtagtact atatattatt gcatttaaat
     3121 gatggatttg aaataaacaa tgattatacc atgattgtaa agacaagaaa cagaacctga
     3181 aatacttcaa tttttgattc tatgtggcag tttagagttt tttaaaacaa tttttatgta
     3241 taatttatat gcaataaatg ccctcaaagt tcaa
//
