LOCUS       XM_047449280            5490 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens DDB1 and CUL4 associated factor 1 (DCAF1),
            transcript variant X25, mRNA.
ACCESSION   XM_047449280
VERSION     XM_047449280.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000003.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5490
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="3"
     gene            1..5490
                     /gene="DCAF1"
                     /gene_synonym="RIP; VPRBP"
                     /note="DDB1 and CUL4 associated factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 47 ESTs, 672 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:9730"
                     /db_xref="HGNC:HGNC:30911"
                     /db_xref="MIM:617259"
     CDS             199..4563
                     /gene="DCAF1"
                     /gene_synonym="RIP; VPRBP"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 1 isoform X3"
                     /protein_id="XP_047305236.1"
                     /db_xref="GeneID:9730"
                     /db_xref="HGNC:HGNC:30911"
                     /db_xref="MIM:617259"
                     /translation="MTTVVVHVDSKAELTTLLEQWEKEHGSGQDMVPILTRMSQLIEK
                     ETEEYRKGDPDPFDDRHPGRADPECMLGHLLRILFKNDDFMNALVNAYVMTSREPPLN
                     TAACRLLLDIMPGLETAVVFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQDI
                     AANYRDENSQLVAIVLRRLRELQLQEVALRQENKRPSPRKLSSEPLLPLDEEAVDMDY
                     GDMAVDVVDGDQEEASGDMEISFHLDSGHKTSSRVNSTTKPEDGGLKKNKSAKQGDRE
                     NFRKAKQKLGFSSSDPDRMFVELSNSSWSEMSPWVIGTNYTLYPMTPAIEQRLILQYL
                     TPLGEYQELLPIFMQLGSRELMMFYIDLKQTNDVLLTFEALKVCMHPHNVLSDVVNYT
                     LWLMECSHASGCCHATMFFSICFSFRAVLELFDRYDGLRRLVNLISTLEILNLEDQGA
                     LLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVKQSLQRTEGGILVHPQPPYKAC
                     SYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLLLQLISIACNWKTYYARNDT
                     VRFALDVLAILTVVPKIQLQLAESVDVLDEAGSTVSTVGISIILGVAEGEFFIHDAEI
                     QKSALQIIINCVCGPDNRISSIGKFISGTPRRKLPQNPKSSEHTLAKMWNVVQSNNGI
                     KVLLSLLSIKMPITDADQIRALACKALVGLSRSSTVRQIISKLPLFSSCQIQQLMKEP
                     VLQDKRSDHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQSRISFPEKELL
                     LLIRNHLISKGLGETATVLTKEADLPMTAASHSSAFTPVTAAASPVSLPRTPRIANGI
                     ATRLGSHAAVGASAPSAPTAHPQPRPPQGPLALPGPSYAGNSPLIGRISFIRERPSPC
                     NGRKIRVLRQKSDHGAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCKNPVAT
                     CPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRFRPI
                     SVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHL
                     EPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDI
                     AHIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDK
                     FNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQA
                     DDEDDLMEERMKSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQG
                     SMDALNMDTVCRLYEVGRQRLAEDEDEEEDQEEEEQEEEDDDEDDDDTDDLDELDTDQ
                     LLEAELEEDDNNENAGEDGDNDFSPSDEELANLLEEGEDGEDEDSDADEEVELILGDT
                     DSSDNSDLEDDIILSLNE"
ORIGIN      
        1 ataatatgtg ggccgctgtg gagccgtggt cgcgctgtgt gtgtgtgtga gtggagagtg
       61 agtgcgggac ctgaggctgt gtgtgtgtga actgtggcca ctggcggggt cggggggggg
      121 cagcggcgga gccgcctcgg acgataagga aattgagatt tggagaagtt aaataaccaa
      181 gacttcacag gcaaagccat gactacagta gtggtacatg tggactccaa agctgagctc
      241 actaccctgc tggagcagtg ggaaaaggaa catggcagtg ggcaggacat ggtacctatc
      301 cttaccagga tgtctcaatt gattgaaaaa gaaactgaag agtatcgtaa aggggatcca
      361 gacccatttg atgatcgaca tcctggtcga gctgatccag agtgtatgct gggccacttg
      421 ctgagaatac tcttcaagaa tgatgatttc atgaatgcac tggtgaatgc atatgtgatg
      481 acaagccgag agcccccttt aaacactgca gcttgcagac tcctattaga catcatgcca
      541 gggctggaaa ctgctgtcgt ctttcaagaa aaggagggaa ttgtcgagaa tcttttcaaa
      601 tgggcccgag aggccgatca accattgagg acatattcta ctggactgtt aggaggtgct
      661 atggaaaatc aagacattgc tgccaactat agagatgaaa attcacagct ggtggcaata
      721 gtgcttcgaa gactgaggga gctacagcta caggaagtgg ctttgcggca ggaaaacaag
      781 cgtcccagtc cacggaagct ctcttctgaa ccccttttgc ctctggatga ggaggctgtg
      841 gatatggact atggtgacat ggctgtagat gtagtggatg gagaccaaga ggaagcttct
      901 ggagacatgg agatctcctt tcatcttgat tcaggccaca agactagtag cagagtgaac
      961 tcaacaacca aacctgagga tggaggatta aagaaaaaca agtcagcaaa acagggtgac
     1021 agagagaact ttaggaaagc caagcaaaag ttgggtttct catcttctga tccagatcgc
     1081 atgtttgttg agctgtctaa tagcagttgg tcagaaatgt ctccctgggt gattggcacc
     1141 aattataccc tttatcctat gactcctgct atcgagcagc gactcattct ccaatatttg
     1201 acccctctag gagaatatca ggagctactt cccatattca tgcaacttgg atcacgggag
     1261 ctgatgatgt tctatattga cctgaagcaa actaatgatg tcctgcttac atttgaggca
     1321 ctaaaggttt gcatgcatcc ccacaatgtt ctgtctgatg tggtgaacta taccctgtgg
     1381 ttaatggagt gttctcatgc ttcaggatgc tgccatgcta ccatgttttt ttcaatttgc
     1441 ttctcatttc gggccgtctt ggagctcttt gaccgctatg atggtcttcg tcgtctggtg
     1501 aacttgatca gtactttgga gattctaaat ttggaagatc agggtgcact tctgagtgat
     1561 gatgaaatat ttgctagccg ccaaactggg aaacatacct gcatggcctt gcgcaaatac
     1621 tttgaggctc acctggccat taaattggaa caagtgaagc agtcacttca gaggactgag
     1681 ggtggcattc ttgtccaccc acaacccccg tacaaggcat gctcatatac tcatgaacag
     1741 attgtggaaa tgatggaatt tttgatagaa tatggcccag cgcagctata ttgggaacca
     1801 gctgaagttt tcctcaaact ttcttgtgtg caactcttgt tgcagcttat ttctattgcc
     1861 tgcaattgga agacctatta tgcaaggaat gacactgtgc gctttgcttt ggatgtcctg
     1921 gctattctta ctgtggtgcc aaaaatccag ctccagttgg cagaatcagt ggacgtgttg
     1981 gatgaggctg gatctacagt ctctactgta ggtatcagca ttattttggg agtggctgag
     2041 ggtgagttct tcatccatga tgctgaaatt cagaagtcag cacttcagat tatcatcaat
     2101 tgtgtgtgtg gcccagataa ccgaatatcc agtattggta aatttatctc tggtactcct
     2161 cggagaaagc tgcctcagaa ccctaaaagc agtgagcaca ccctggccaa gatgtggaat
     2221 gtggttcagt ccaacaacgg catcaaggtg ctcctgtcct tactgtccat taagatgccc
     2281 atcacagatg cagaccaaat ccgggccctg gcctgcaaag ccctagtggg cctgtctcgc
     2341 agtagcactg tccggcagat catcagtaaa ctgccccttt tcagcagctg ccagatccag
     2401 cagctgatga aggagcctgt gctgcaggac aagcgcagtg accatgtcaa gttctgcaag
     2461 tatgctgctg aactcattga acgggtgtca ggaaaaccac ttctcattgg cactgatgtt
     2521 tccctagcac gactgcagaa agcagatgtt gttgcccagt caaggatctc cttccctgag
     2581 aaagagctgc ttttgttgat acgaaaccat cttatttcta aagggcttgg agaaacagca
     2641 accgtgctga caaaagaggc tgacctgccc atgactgctg cctcccattc ttctgccttt
     2701 accccagtca ctgctgctgc ttctcctgtc tctctacccc gaacccctcg tatcgctaat
     2761 ggcattgcaa ctcgtctggg cagccatgct gctgtgggtg cctctgcgcc ttctgcccct
     2821 actgctcatc ctcagccacg gcccccccag ggtccgctag ctctgcccgg cccatcttat
     2881 gcaggcaact cccctttgat tggtagaatc agttttatca gagagaggcc atcaccctgc
     2941 aatggcagga aaatcagagt gttgcggcag aagtcggacc atggtgccta cagccaaagc
     3001 ccagccataa aaaaacagct ggacagacat cttccttccc cacctacgct ggacagtata
     3061 atcacagagt atcttagaga acaacatgct cgctgcaaga atccagttgc cacctgccca
     3121 cctttctccc tctttactcc tcaccaatgt cctgagccaa aacagaggcg gcaagcgcca
     3181 ataaacttta cgtcaaggct aaaccgcagg gcatcatttc caaagtatgg aggggtggat
     3241 ggcggatgct ttgataggca ccttatcttt agcagattcc gtcctatttc agtgttccgg
     3301 gaagccaatg aagatgagag tggcttcacc tgctgtgcat tctcagcacg ggagcggttc
     3361 ctgatgcttg gcacctgcac agggcagctg aagctctata atgtgtttag tggacaggag
     3421 gaggccagct ataactgtca caactcagcc atcacacatc ttgaaccttc cagggatggg
     3481 tccttgctgc tgacatctgc tacttggagc cagcctttgt ctgcactttg gggaatgaag
     3541 tcagtatttg atatgaagca ttccttcaca gaagatcact atgttgagtt cagtaagcac
     3601 tcccaggatc gggtcatcgg cacaaaagga gacattgccc acatttatga tattcagact
     3661 ggcaacaagc tgttgactct gtttaaccca gatcttgcca acaactacaa gaggaactgt
     3721 gccaccttta atcctacaga tgatcttgtc ttaaatgatg gcgtcctctg ggatgtccgc
     3781 tctgcacagg ccatccacaa gtttgacaag ttcaatatga acatcagtgg tgttttccat
     3841 ccaaatggac tggaggtgat cattaatact gagatttggg accttcgaac ttttcatctt
     3901 ttgcatactg ttcccgctct ggatcagtgt cgcgtggtgt tcaatcacac gggaacagtg
     3961 atgtatggag ctatgttgca ggcagatgat gaagatgact taatggaaga gaggatgaaa
     4021 agcccctttg ggtcatcctt ccgaacattt aatgcaactg actacaaacc tatagcaacc
     4081 attgatgtga aacggaacat ctttgacctg tgtacagaca ccaaagactg ctatcttgct
     4141 gtcattgaga atcaaggcag catggatgcc ctgaacatgg acacagtatg caggctgtat
     4201 gaagtgggca ggcagcgtct ggcagaggat gaggatgaag aggaggacca ggaagaggaa
     4261 gaacaggagg aagaagatga tgatgaagat gatgatgaca ccgatgattt agatgagctt
     4321 gacactgacc agttgctgga ggcggagttg gaggaggacg acaataatga gaacgcaggg
     4381 gaagatgggg acaatgactt ctctccctct gatgaggagc tagcaaacct tctagaggag
     4441 ggagaggacg gggaggatga agactctgat gcagatgagg aggtggaact gatcctgggg
     4501 gacactgaca gctctgacaa ctctgatttg gaagatgaca tcatcttatc tctgaatgag
     4561 tgaggagcca tcactgcttg gaagagattc ttggcaggcg agaaactgag tcaaatgaat
     4621 tcagaacata ttcccttctc tttctcccag ggctgtctgt cttttaagga gctgcatgcc
     4681 ctgcattcag aagattatgg cttagagagc ctcattggca cccgagggtc cttccagaat
     4741 caataaccac cacaaaaatg acaacaggga ctaggcccta ctctgcaccc cccacatcca
     4801 ccccccacca tttcctagga tggacatatc tttcaagggg aaaaaaaaac catgtctctg
     4861 gggtatttca caatatattt tctttgtata gtgttcttta cttaaagaac aagaaatagt
     4921 tttttataaa actttaaaaa ggaaaaaaaa acaggcattt ataactgagg gtatgaactt
     4981 atatccacca ggtctcttgt ccctgcactt cattttcttt ggaagaaaat gatgtctaaa
     5041 gaacaatata gaggcatttt tacatacgta tttaaatgaa aaggaaaatc gtggtttctt
     5101 aaattgataa ggattaagaa tattttatta taaatataat atatgatttt ttaacctgtt
     5161 ttgttgcctc atatgctgtc aggttaattt gttttccttc gtgccagagg tggggaggaa
     5221 ggcactctgt ctgctgggta aatgcctaaa ttcactcacc ttcatggttt gggggcagca
     5281 tggtcattgt ggatattggt tttgtggagt tgagggaact taggatataa gttcactccc
     5341 tctatttttc tttgtgattc agtttttcaa aaatcttttt ttcttccctt tctccccatt
     5401 gtggaaatta caaatcaaag gcctttttct ttaatgtaaa gtgtatttat ttaaaaaaaa
     5461 tacaaaataa actacaagtc tgtctttgtt
//
