LOCUS       NM_001352888            6893 bp    mRNA    linear   PRI 24-DEC-2023
DEFINITION  Homo sapiens cortexin domain containing 1 (CTXND1), mRNA.
ACCESSION   NM_001352888 NR_120317 XR_424651 XR_429574 XR_433141
VERSION     NM_001352888.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC087761.6.
            
            On Nov 23, 2018 this sequence version replaced NM_001352888.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1803611.260497.1,
                                           SRR5189652.71590.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2145122, SAMEA2145544
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000560778.3/ ENSP00000489837.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-207               AC087761.6         22259-22465
            208-359             AC087761.6         70732-70883
            360-6893            AC087761.6         72458-78991
FEATURES             Location/Qualifiers
     source          1..6893
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="15"
                     /map="15q25.1"
     gene            1..6893
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /note="cortexin domain containing 1"
                     /db_xref="GeneID:100996492"
                     /db_xref="HGNC:HGNC:50507"
     exon            1..207
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /inference="alignment:Splign:2.1.0"
     exon            208..359
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /inference="alignment:Splign:2.1.0"
     exon            360..6893
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /inference="alignment:Splign:2.1.0"
     CDS             425..604
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /note="long intergenic non-protein coding RNA 1314"
                     /codon_start=1
                     /product="cortexin domain-containing 1 protein"
                     /protein_id="NP_001339817.1"
                     /db_xref="CCDS:CCDS86481.1"
                     /db_xref="GeneID:100996492"
                     /db_xref="HGNC:HGNC:50507"
                     /translation="MEEPTPEPVYVDVDKGLTLACFVFLCLFLVVMIIRCAKVIMDPY
                     SAIPTSTWEEQHLDD"
     regulatory      1213..1218
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /note="hexamer: AATAAA"
     polyA_site      1238
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /note="major polyA site"
     regulatory      3396..3401
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /note="hexamer: CATAAA"
     polyA_site      3418
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
     regulatory      3556..3561
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /note="hexamer: ATTAAA"
     polyA_site      3578
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
     regulatory      6868..6873
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /note="hexamer: AATAAA"
     polyA_site      6893
                     /gene="CTXND1"
                     /gene_synonym="LINC01314"
                     /note="major polyA site"
ORIGIN      
        1 agagccccct ctcggctgct ggcccgggct cgcccgcgcc gctgggggct ctgactcctg
       61 ccgagccggg cctgggcagc gccccccgcg ccccgcgagc ccgcgccccc gtcaccggga
      121 aacgccgtag ccggcgatcc gcggtcgccc tgggctcggc gccggcccag ccaggacccc
      181 gggagcgcac gggacgggcc tcgccagtca cactccagcg cccccacgag ccagcacagt
      241 gcctgctctc agtgaaaggc cactgttctc cttgggtgac ccccatgatg cctgaccgct
      301 cctcgtgcct cctggaacag ccagggtcct tatgaagtgg tgaccactcc agtcagcagg
      361 ggtggaaaat ggtaccagtc aaacccgagg cggaggagga gcagcccgca gtcgctgccg
      421 cgagatggag gagcccacgc ccgagcccgt ctatgtcgac gtagacaaag ggctgacctt
      481 ggcctgcttc gtcttcctct gcctcttcct tgtcgtgatg atcatccgct gtgccaaggt
      541 catcatggac ccttacagcg ccatccccac atccacctgg gaggagcagc acctggacga
      601 ctgaggcaca gcggctgtgg ggactggacc tggcgctctg tgggtggctg tgccccagga
      661 tgcatccgtg tgttccctgc cagcctgcca tcccacagag gcaaggaatg aatctggcca
      721 cccagggaaa cagaaggtgc agcttagccc tctcagccct ccctcgagca ccagcgtgga
      781 atgcccgggt gccgtgggtg tcgcaaccat ggaccagcca ggggaaaaga gccctggacc
      841 aggacccagg aggctggggt tccagtgtgg ggagtccctg tgagatgata gggtagtcac
      901 cttcccaggt tcctgggcac cttttggaac tggatccagc aacagacacc ccccatccat
      961 cacataacag tggtcttgtc ttgaggagac tctcggtcct ttaaatgcaa agtagcaatg
     1021 gaggctccca accaagaggt cccacctgaa ccccagcccc ctccccatgg actagcagtg
     1081 gtgtggcagt gaggggggaa agcgggttga gggagtctca cctgaaaatt cacaaaacgc
     1141 acaggatatg ggctgcttcc aagcagtatt tttttaaact aaaatataga gggatatatt
     1201 tttcctgtta taaataaaat gtacatttta gaaacttggg aaaatgcaga taaatagaaa
     1261 gaaaggggga ggaaataaca cttataatcc cacctcccgg aaaccaccat tttgatatat
     1321 tttcttccag cctttttact tgtatttttt agtcaaattc atactctgtg catgatgttg
     1381 tatcgcctca tatgatagca ggaatacttc cccattacat caaacactct tcttagctgc
     1441 cagttttagt gaccgaaggg catcccatcg gttgggtagg tcatggttaa aaaatcatct
     1501 cctttggttg catatttaat tattttccac tattttttcc tcacacaaaa tgatttcgcc
     1561 cggtaccctt tttgggggtg cacagtccat gagatgaata ttgaatgggg agacctgggt
     1621 tctagtctcg catttaccag tcaggttaca atgcgacctt gagcaagtca cttcacctcc
     1681 cagcgcctca gtttcctcat tgtaagatag gaaaagcctt gtcattttta aaattttatt
     1741 ttttgcatat acctcatgtg aacgaaagga cagaaagggg agtgaatata ctatgaatgt
     1801 gctatagtcg gagttggggg gcaaggaaga agtcatcgat gatggctctt ctcaggccct
     1861 ccctcctccc acctctttct gccctccacc ccactcccac tccatcacct acatctatga
     1921 ccttgcagca aaatcattag agcagagcct acaaaaccgg ccccaagtcc caattcctct
     1981 acttccttgt tagaggaccc caaataactc actcagcctc tctgagcccc aatttcctca
     2041 cctgtaaagt gagggaataa catctacctc gcaaggttgt tgtgaggacg aaatgagaga
     2101 acatgggcaa acatgaatgt tcttgaattc accaccccag gagaagccag gggtctgagc
     2161 tgggaggagc agaggttctg ggtgccccct gcccctacag agcctggcac cttcagcttt
     2221 tctcaacttc tgagggctgc ttcctacagg ccaaatctcc cagccggaac cacttggtca
     2281 gaggaacact cacagcagcc tttcccagca cctgacctca agggatatgg cgtctaccaa
     2341 tttacataat tgcctttgtc atcagttttc ccataacatg gtacgaagtt aaatgagagc
     2401 acctgagctc cccttcctct gagtgcattt attccatccc tccaagctgt ggccttccat
     2461 ccccatccaa gagacctgca gctgtgaaga agctcaagac ttctttctca ttgcctgcct
     2521 cccagccatt agtccccacc acagcccagg ccacctggaa aatgggttcc aaagcactat
     2581 cactactagg tgacccctga atgtggacaa ggccacagct cttcaggcag catttcaggg
     2641 gctatccagt tgtcatccct ctcatacccc tctcctaccc acccctatcc ccactattgt
     2701 ggaatgcacg aagggacagc tggcaaaggc agtgaaccaa gatgcaggga aggccctgta
     2761 tgatggggag gatctaaagc aaaagccttt tgtgcattgc ctcaggttca gcagcagcag
     2821 ccctcactct gaagcctacc ttgagaagcc aggcatttct gtgaaaagct catcagcatg
     2881 catttacaat gcaaactaga accaactccc agtcagctaa taacagaccc caggaaaaag
     2941 aaaaggtctt ccagacctcc ccgacacact ttagaaccct caggggtgaa aaagagggtg
     3001 ctccagggca gtgcaactta aactgtggtt gaaggacaaa cagcctctgc aatacttgag
     3061 gagcttgtta gaaacccaaa ctcacagccc cctccagacc tacgtacaga atgtatatta
     3121 gcaagattcg ctaggtggtt tatgtgcacg ttaaagttta agaagcactg cctgagaatc
     3181 ccttggtcct aattaattct tttccacact cagatttgct aatgggtttc accttatctc
     3241 ttgactcttg tttgatggca acaggaaata gtagcatttc aggaagggtg gaaaatataa
     3301 aaagcactcc caacccaagc ctccaaaaaa cagcaatttt cattttgtgt ccatatattc
     3361 ccttctaatc attgtcctca tgcaagattt tttttcataa agatgatctg ctacataatt
     3421 ttatatcata ctctttctcc taacattaca tcacaagtat actttcatgt tgctgctaca
     3481 ttcttcacac ttgtcatttt aatggccata aaacatgaca tctagtgcac atatataatt
     3541 atgtagactc ctattattaa atatttggat ttcttccatt ttccctgttg tacatgttcc
     3601 aagcaaaaaa agaaagatca agatagatat gatgaagccg gggagcttgc ttaagacagg
     3661 ggagaataaa tacttacagt acactctctc catttaagag acacatggag cacatggggg
     3721 agggagacct gtctaagaac tggatcatat taaggagaaa aaagcaactg gaatctcagg
     3781 cttcagttgt tgcattatgc tgctgaagca tagaggagat ggtcctttgt gatcagagcg
     3841 tctcaactcg tttctggcaa gctaagatga actttggggt tgtggataga aagataaact
     3901 gatctgcaaa agaaatgcac agaagtattg aaggctagaa gttggcagac aagaaatgaa
     3961 aagcatttag agaatgggag gcctgtgaag gtagccacaa cccaggactt aaggagaaca
     4021 caggctggag aggaactctc caaagcagag aatgggtggt gggttttcca ggcaatggtg
     4081 cctagtggcc agttttaagt tgttgcttgt actgtgctca gctacactcc cttcatgttg
     4141 ccccaagccc tctctaaagt ctgataaatg atccaccact ctgcagcagt ggtctttggg
     4201 acaatgaaga cacctcggtg gtgggtcact tagggaaata caatctggaa ggggccaaca
     4261 gtcccagaga caagtggggt agcagaaata tgcagaacca agagttcaga gtgatggtca
     4321 ctagaagaaa tgtggcctct aaggatgctc agacaggtgg atatgtatag taggacccta
     4381 gctttaccat cctggcatat cattcccatc atagctattt catttttttc caattagttg
     4441 ctgaaatgtc tacatgttct tatcgagttg aaagatcagt gtctccctgt ctcattaaat
     4501 ttccagaact tcagaggcta aatcaatcca aaaggggctg gccctgcttt caaacaccaa
     4561 gtgaagagaa ctacaaagtt tggtgtgtcc actagtgtgg tttcataccc cctaggtctt
     4621 gctgttgagg actggttctg ccaggcatga tcaatgacca cccacaatgt cctgtggccc
     4681 agcctgtgga gaggtgccca aacagagtta tctgggtcca catccatgtg cccagctatt
     4741 ctgtccaatc atagcacaaa gacaggttgc ctgtgtccag agggacacac agcctcaggc
     4801 acaccagccc ttacttatga gcttgatggt catcagcaaa gactctctcc ctttaggagg
     4861 gttctccttg ggacttttca gtgtcttggc aggaaagaga tggcacacac gaagcactga
     4921 ttgaagacag tttaatgaaa gaatatttac agaggttggg caagggtatg gaaaacaaca
     4981 gggaacagta aaacacccag ggatgacaag gcaaggtagc tcatgtctgt aatctcagca
     5041 ctttgggagg ccaacacagg cagattgctt gagcccagga gtttgaaacc agcctggcaa
     5101 cataagcaag aatctgttta tctacaaaaa ataaaataat taaaaaaaaa ttacctggct
     5161 gtggtgttgc acacctatag tcccagctac tcaggagtct gaggtgggag gatcacttga
     5221 gtccaggagt ttgaggttac aatgagctag gatcacacta ctgcactcca gcctaggcga
     5281 caaagagaga tgctgtctct aaaaataaaa aacaaaaaca aactacccag gaacaggcag
     5341 gccaccaact gttaccatct cttgcctaga gagacaagga gaaggatcta gaacccaggg
     5401 agagctatag ccatggagaa ggagtcaccc aatggaagcc ctggccacag ctagaggatc
     5461 aaaactcctg cacccactgc agctcagtag gaagagagct gggggaataa ataccttgac
     5521 ctcttgcctc ctgccctcca atctcctgtc tgggtcttcc attggccaaa aacaacagaa
     5581 gctaaaggtc aggggaccct gggtgatacg gtccacatag gcagcacact ggagcaaaag
     5641 aagaaaaacc agcacaattc atcttattac cacttagcag ccattcacaa actttgctta
     5701 gatgggagaa aaatattttg tccccggcac aggggaaaca taaaatctca ccagcagcca
     5761 tattgtctgg gggtgatagc aatttagtcc cactccctcc tgcaacttaa atcataatgt
     5821 agccagtccc gggtaagtgg aacacttcct gtaaagcaca actgctagtg cccccttctg
     5881 tggctggtca tgaggcccag agtggtaact gcagtcttgt tctcccacca cccattccat
     5941 agcccctcta ctttctggca gtcccttagc tgttggagaa ttttatctgg tggaatgacc
     6001 caaatcttca tccacagagg attcaaattc ttagtgccgt gtcttcaatg agttgccaca
     6061 gtatccacag attcctaaag aacatgaaga ggccttgaag atctcacctg gaagctctgt
     6121 aaaattatca gaaagaatag caggtgctct agggcaacac tactcaaact atggtccacg
     6181 gatggacagc attggcatct ctggggagct tgttagaaat ctaatttcat gcccccacct
     6241 caggcttaca gaatgaggac aagggataca gggagtacca agtgccctag cgaatcccag
     6301 ggttccaaag ctagtactcc ttgcccctat tgtgtagcag aaaccccact ttcccttgga
     6361 tattggggtt aaccatcctg acagtgcagt gatctctttc tctgccaata tttcaacata
     6421 aggagcccca gatggcacaa gatcatcttc caatttaaca gacccataac tatattccct
     6481 ggtggaagca gttcctcttg gtcactagag atttccaaac ccacaaaacc taaggtttct
     6541 tggttaaagg ccatgtttgt gggatatgct gagatgaata tgctgtggtt tgaatgtgtc
     6601 ccccaaagtt catatgttgg aaacttgatt cccattgcaa cagtgttgag atctggggcc
     6661 caatgagagg tgattaggcc atgagggcgg agtgaatgga ttaatgcagt tatctcaaga
     6721 gtgggtttgt tatgaagggg gtgtttggtc ctcttttctc tcttgcccat gtgattcctt
     6781 ccaccatgtt tatgatgcaa caagaaggtc ctcaccagat gctggttcct tgatcttgta
     6841 ttttgcagcc tccaaaatcg tgagccaaat aaatttctat tcattataaa tta
//
