LOCUS       NM_001396132            1772 bp    mRNA    linear   PRI 17-FEB-2024
DEFINITION  Homo sapiens cancer/testis antigen family 47 member C1 (CT47C1),
            mRNA.
ACCESSION   NM_001396132
VERSION     NM_001396132.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Hwang,H., Park,G.W., Park,J.Y., Lee,H.K., Lee,J.Y., Jeong,J.E.,
            Park,S.R., Yates,J.R. 3rd, Kwon,K.H., Park,Y.M., Lee,H.J.,
            Paik,Y.K., Kim,J.Y. and Yoo,J.S.
  TITLE     Next Generation Proteomic Pipeline for Chromosome-Based Proteomic
            Research Using NeXtProt and GENCODE Databases
  JOURNAL   J Proteome Res 16 (12), 4425-4434 (2017)
   PUBMED   28965411
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL772284.5.
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            MANE Ensembl match        :: ENST00000620151.4/ ENSP00000488984.1
            RefSeq Select criteria    :: based on manual assertion, longest
                                         protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1086              AL772284.5         138906-139991
            1087-1239           AL772284.5         140873-141025
            1240-1772           AL772284.5         142146-142678
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="X"
                     /map="Xq24"
     gene            1..1772
                     /gene="CT47C1"
                     /note="cancer/testis antigen family 47 member C1"
                     /db_xref="GeneID:727838"
                     /db_xref="HGNC:HGNC:53820"
     exon            1..1086
                     /gene="CT47C1"
                     /inference="alignment:Splign:2.1.0"
     CDS             234..1208
                     /gene="CT47C1"
                     /note="cancer/testis antigen family 47, member A
                     pseudogene; cancer/testis antigen family 47 member A11
                     pseudogene"
                     /codon_start=1
                     /product="cancer/testis antigen family 47 member C1"
                     /protein_id="NP_001383061.1"
                     /db_xref="CCDS:CCDS94658.1"
                     /db_xref="GeneID:727838"
                     /db_xref="HGNC:HGNC:53820"
                     /translation="MSATGDQDLIQEDQEAPVNQEGAQAEAVGDREGGDSGPDSGNTV
                     AGVAGPMRGLGEEEGEQAAGLAAAPGGGNAEEDSEIRIVVEMVEEEEDEEEEEEEEEE
                     ERNEADNFDLVAAARRYPIRGFRMEFLDMVHSLLLRIYHNDHILIRMRGGRLMRRRRT
                     AAPSGSEEPRLLLVHERLGVGAAGPEGEGLGLLQEAALVPEPEVPADLAEMAREPAEE
                     PAEEASEKPTEEAAEEPAEEASEKPTEEAAEEELAEEAAEEPAKEEPAAEEESAEEPA
                     TEEAAAPEEVTKYQHEKWDEEAQDAAGKEEKEEKEKDAENKVKNSKGT"
     exon            1087..1239
                     /gene="CT47C1"
                     /inference="alignment:Splign:2.1.0"
     exon            1240..1772
                     /gene="CT47C1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagtcctctc aggccaacct cagcgggagg ctcctgggat cggctccctg cccttcccac
       61 cttagggtgt cctcagagac agacttttat tccctcagta aggagacaga ctcttattct
      121 ctcagcagcc cagcccctca cctcccctca gccacagcca catcagtggc caccgtcttc
      181 accgttgtca cctcagccta gtcgccactc cagttgaggc actgactggc gtcatgtctg
      241 ccacagggga tcaagacctg atccaagagg accaggaggc tccagtgaac caggagggag
      301 cgcaggccga ggccgtaggt gaccgggagg gcggtgactc tggccccgac agtggcaaca
      361 ctgtggccgg agtcgcaggg cccatgagag gcctcgggga ggaggagggt gagcaggcgg
      421 caggcttggc cgcagccccc gggggtggga acgccgagga agactcagag atcaggatag
      481 tagtggagat ggtggaggag gaggaggatg aggaggagga agaggaggag gaggaggaag
      541 agaggaacga ggcggacaac ttcgacttgg tcgcggccgc ccgtcgctac cccataagag
      601 gctttcgcat ggagtttctg gacatggtcc actcccttct cctccgcatc tatcacaacg
      661 accacatcct gatcaggatg cgtggcggcc gcctgatgcg gaggcgccgc actgcggcgc
      721 ccagtggctc agaagagccc cggctgttgc tggtgcatga gaggctgggc gtgggggccg
      781 cgggtcctga gggcgagggc ctgggcctgc tccaggaggc cgcgttggtc ccagagcctg
      841 aggtgccagc agacctggcc gagatggcca gggagcctgc agaagagccc gcagaggagg
      901 cctcagagaa gcccacagag gaggccgcag aagagcccgc agaggaggcc tcagagaagc
      961 ccacagagga ggccgcagag gaggagctcg cagaggaggc cgcagaggaa ccggccaaag
     1021 aggaaccggc tgcagaggag gagtccgcag aggaaccggc cacagaggag gctgctgccc
     1081 ctgaggaagt cactaaatat cagcatgaaa agtgggatga agaggcccaa gatgctgcag
     1141 gcaaggaaga gaaagaagag aaagagaagg atgctgaaaa caaggtgaag aactccaaag
     1201 ggacctagac gcagcagagg ggaagctgag aaaatccaga tgcctgtgag aattttaaca
     1261 catatcattc caaagttcat taccttaaaa gtgatatcta gtgacatcta acttttatct
     1321 ttcacaaatg tatttgacag tgtttgttca agttagaaat aaaagtttgt tttaaatgaa
     1381 taaattgaaa catggggaga tttttcaata aataattctg actcaaatct ctcttttacc
     1441 tctttgtttt ggcccaccat accttcattg aaaggtatta ctttccacca tttagtaaga
     1501 ctgttttaaa ttcttttact gcagccaaaa gtcaattaaa atgtcaagtt taaaaccatt
     1561 tttgcaaaga gagagatggg gctcaagtct ttagagctgt actgtctact accttagtca
     1621 ctagtaacgt tgtggctgct gagcacttgt aatatggcta gtctgtttga tatgtgctgt
     1681 aagtgtgaaa ataatattgc atatcttact aatgattttc atactgatta catgttgaga
     1741 tgataatact tgaattaaaa tgaaatgtta aa
//
