LOCUS       NM_001080145            1298 bp    mRNA    linear   PRI 16-FEB-2024
DEFINITION  Homo sapiens cancer/testis antigen family 47 member A2 (CT47A2),
            mRNA.
ACCESSION   NM_001080145 XM_001126628
VERSION     NM_001080145.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Chen,Y.T., Iseli,C., Venditti,C.A., Old,L.J., Simpson,A.J. and
            Jongeneel,C.V.
  TITLE     Identification of a new cancer/testis gene family, CT47, among
            expressed multicopy genes on the human X chromosome
  JOURNAL   Genes Chromosomes Cancer 45 (4), 392-400 (2006)
   PUBMED   16382448
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL670379.17.
            This sequence is a reference standard in the RefSeqGene project.
            
            On Aug 13, 2020 this sequence version replaced NM_001080145.1.
            
            Summary: This locus represents a member of the cancer/testis gene
            family 47. This family, also known as CT47, is comprised of 13
            nearly identical loci clustered at Xq24. [provided by RefSeq, Sep
            2010].
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14038197.166205.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000458218.3/ ENSP00000414253.2
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 AL670379.17        51544-51547         c
            5-1001              AL670379.17        50547-51543         c
            1002-1157           AL670379.17        49504-49659         c
            1158-1298           AL670379.17        48225-48365         c
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="X"
                     /map="Xq24"
     gene            1..1298
                     /gene="CT47A2"
                     /gene_synonym="CT47.2"
                     /note="cancer/testis antigen family 47 member A2"
                     /db_xref="GeneID:728090"
                     /db_xref="HGNC:HGNC:33283"
                     /db_xref="MIM:300781"
     exon            1..1001
                     /gene="CT47A2"
                     /gene_synonym="CT47.2"
                     /inference="alignment:Splign:2.1.0"
     CDS             260..1126
                     /gene="CT47A2"
                     /gene_synonym="CT47.2"
                     /note="cancer/testis CT47 family, member 2"
                     /codon_start=1
                     /product="cancer/testis antigen 47A"
                     /protein_id="NP_001073614.1"
                     /db_xref="CCDS:CCDS35390.1"
                     /db_xref="GeneID:728090"
                     /db_xref="HGNC:HGNC:33283"
                     /db_xref="MIM:300781"
                     /translation="MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSD
                     VVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEA
                     ANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARN
                     LWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEE
                     KLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEK
                     DAENKVKNSKGT"
     exon            1002..1157
                     /gene="CT47A2"
                     /gene_synonym="CT47.2"
                     /inference="alignment:Splign:2.1.0"
     exon            1158..1298
                     /gene="CT47A2"
                     /gene_synonym="CT47.2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccaaccaga atctttccca acttgtctaa gtcctctcag gccagccttg gtgggaggtt
       61 tctaggattc gctccctgcc cttcccatct tagggtgtcg tctgagacag actcttattc
      121 cctcaataaa gagagagact cttattccct cagcggccag ctcctcgcct cccctcggcc
      181 gtagccacct cagtggtcac cgtcttcacc gtggtcgcct cagcccgctc gccaccccag
      241 ttgaggcgct gctggtgtca tgtctgccac aggggaccga cacccgaccc aaggggacca
      301 ggaggccccg gtaagccagg agggagcaca ggccgaggcg gccggagctg gtaaccagga
      361 gggcggcgac tccggccccg acagcagcga cgtggtgcct gcggccgagg tggtcggagt
      421 cgcagggccc gtggaaggcc tcggggagga ggagggtgag caggcggcag gcctggccgc
      481 agtcccccgg ggcgggagcg ccgaggagga ctcagatatc gggcccgcga cggaggaaga
      541 ggaggaggaa gaggggaacg aggcggccaa cttcgacttg gcggtggtcg cccgtcgcta
      601 cccggcgtcg ggcattcact tcgtgctcct ggacatggtc cactcccttc tccaccgcct
      661 ctctcacaac gaccacatcc tcatagagaa ccgtcaactc agccgcctga tggtggggcc
      721 acacgctgct gcgcgcaacc tctggggcaa cctccccccg ctgctgctgc cccagaggct
      781 gggtgcaggg gccgcagccc gggcgggcga gggcctgggc ctgatccagg aggccgcatc
      841 ggtcccagag cctgcagtgc cagctgacct ggccgagatg gccagggagc ccgcggagga
      901 ggccgcagag gagaagctct cagaggaggc cacagaggaa ccagacgcag aggaaccggc
      961 cacagaagaa ccgaccgcac aggaggccac ggccccagag gaagtcacta aatctcagcc
     1021 cgaaaagtgg gatgaagagg cccaagatgc tgcaggcgag gaagagaaag aacaagaaaa
     1081 agagaaggat gcggaaaaca aggtgaagaa ctccaaaggg acctagacgc agcagaggtg
     1141 aagccaagaa aatccagatg cctgtgggaa ttgtaacaca tatcattcca aagttcgtta
     1201 catcaaaagt gatatccagt gacatctaac tttcatggat gtatgtgaca gtgttcaagt
     1261 taaaaaataa aagtttgttt taaatgaata aactgaaa
//
