LOCUS       NM_001080146            1260 bp    mRNA    linear   PRI 17-FEB-2024
DEFINITION  Homo sapiens cancer/testis antigen family 47 member A1 (CT47A1),
            mRNA.
ACCESSION   NM_001080146 XM_001126643
VERSION     NM_001080146.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Chen,Y.T., Iseli,C., Venditti,C.A., Old,L.J., Simpson,A.J. and
            Jongeneel,C.V.
  TITLE     Identification of a new cancer/testis gene family, CT47, among
            expressed multicopy genes on the human X chromosome
  JOURNAL   Genes Chromosomes Cancer 45 (4), 392-400 (2006)
   PUBMED   16382448
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL670379.17.
            This sequence is a reference standard in the RefSeqGene project.
            
            On Nov 20, 2020 this sequence version replaced NM_001080146.2.
            
            Summary: This locus represents a member of the cancer/testis gene
            family 47. This family, also known as CT47, is comprised of 13
            nearly identical loci clustered at Xq24. This locus is the most
            telomeric of the cluster.[provided by RefSeq, Sep 2010].
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU630262.1, SRR9304718.227871.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2148874 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000433030.4/ ENSP00000393315.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-973               AL670379.17        55407-56379         c
            974-1129            AL670379.17        54364-54519         c
            1130-1260           AL670379.17        53095-53225         c
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="X"
                     /map="Xq24"
     gene            1..1260
                     /gene="CT47A1"
                     /gene_synonym="CT47.1"
                     /note="cancer/testis antigen family 47 member A1"
                     /db_xref="GeneID:728096"
                     /db_xref="HGNC:HGNC:33282"
                     /db_xref="MIM:300780"
     exon            1..973
                     /gene="CT47A1"
                     /gene_synonym="CT47.1"
                     /inference="alignment:Splign:2.1.0"
     CDS             232..1098
                     /gene="CT47A1"
                     /gene_synonym="CT47.1"
                     /note="cancer/testis CT47 family, member 1"
                     /codon_start=1
                     /product="cancer/testis antigen 47A"
                     /protein_id="NP_001073615.1"
                     /db_xref="CCDS:CCDS35391.1"
                     /db_xref="GeneID:728096"
                     /db_xref="HGNC:HGNC:33282"
                     /db_xref="MIM:300780"
                     /translation="MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSD
                     VVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEA
                     ANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARN
                     LWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEE
                     KLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEK
                     DAENKVKNSKGT"
     exon            974..1129
                     /gene="CT47A1"
                     /gene_synonym="CT47.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1260
                     /gene="CT47A1"
                     /gene_synonym="CT47.1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagtcctctc aggccagcct tggtgggagg tttctaggat tcgctccctg cccttcccat
       61 cttagggtgt cgtctgagac agactcttat tccctcaata aagagagaga ctcttattcc
      121 ctcagcggcc agctcctcgc ctcccctcgg ccgtagccac ctcagtggtc accgtcttca
      181 ccgtggtcgc ctcagcccgc tcgccacccc agttgaggcg ctgctggtgt catgtctgcc
      241 acaggggacc gacacccgac ccaaggggac caggaggccc cggtaagcca ggagggagca
      301 caggccgagg cggccggagc tggtaaccag gagggcggcg actccggccc cgacagcagc
      361 gacgtggtgc ctgcggccga ggtggtcgga gtcgcagggc ccgtggaagg cctcggggag
      421 gaggagggtg agcaggcggc aggcctggcc gcagtccccc ggggcgggag cgccgaggag
      481 gactcagata tcgggcccgc gacggaggaa gaggaggagg aagaggggaa cgaggcggcc
      541 aacttcgact tggcggtggt cgcccgtcgc tacccggcgt cgggcattca cttcgtgctc
      601 ctggacatgg tccactccct tctccaccgc ctctctcaca acgaccacat cctcatagag
      661 aaccgtcaac tcagccgcct gatggtgggg ccacacgctg ctgcgcgcaa cctctggggc
      721 aacctccccc cgctgctgct gccccagagg ctgggtgcag gggccgcagc ccgggcgggc
      781 gagggcctgg gcctgatcca ggaggccgca tcggtcccag agcctgcagt gccagctgac
      841 ctggccgaga tggccaggga gcccgcggag gaggccgcag aggagaagct ctcagaggag
      901 gccacagagg aaccagacgc agaggaaccg gccacagaag aaccgaccgc acaggaggcc
      961 acggccccag aggaagtcac taaatctcag cccgaaaagt gggatgaaga ggcccaagat
     1021 gctgcaggcg aggaagagaa agaacaagaa aaagagaagg atgcagaaaa caaggtgaag
     1081 aactccaaag ggacctagac gcagcagagg tgaagccaag aaaatccaga tgcctgtggg
     1141 aattgtaaca catatcattc caaagttcgt tacatcaaaa gtgatatcca gtgacatcta
     1201 actttcatgg atgtatgtga cagtgttcaa gttaaaaaat aaaagtttgt tttaaatgaa
//
