LOCUS       NM_001355613            1359 bp    mRNA    linear   PRI 04-APR-2024
DEFINITION  Homo sapiens cytoplasmic polyadenylated homeobox like (CPHXL),
            mRNA.
ACCESSION   NM_001355613
VERSION     NM_001355613.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Tohonen,V., Katayama,S., Vesterlund,L., Jouhilahti,E.M.,
            Sheikhi,M., Madissoon,E., Filippini-Cattaneo,G., Jaconi,M.,
            Johnsson,A., Burglin,T.R., Linnarsson,S., Hovatta,O. and Kere,J.
  TITLE     Novel PRD-like homeodomain transcription factors and
            retrotransposon elements in early human development
  JOURNAL   Nat Commun 6, 8207 (2015)
   PUBMED   26360614
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1359)
  AUTHORS   Leidenroth,A. and Hewitt,J.E.
  TITLE     A family history of DUX4: phylogenetic analysis of DUXA, B, C and
            Duxbl reveals the ancestral DUX gene
  JOURNAL   BMC Evol Biol 10, 364 (2010)
   PUBMED   21110847
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC009122.8, LN651082.1, AC025287.8 and LN651083.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: LN651082.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2148874, SAMEA2158188
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000640559.2/ ENSP00000491599.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-31                AC009122.8         68234-68264         c
            32-387              LN651082.1         31-386
            388-528             AC025287.8         2768-2908
            529-1196            LN651083.1         164-831             c
            1197-1359           AC025287.8         3577-3739
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
                     /map="16q23.1"
     gene            1..1359
                     /gene="CPHXL"
                     /gene_synonym="CPHXL1"
                     /note="cytoplasmic polyadenylated homeobox like"
                     /db_xref="GeneID:105371346"
                     /db_xref="HGNC:HGNC:51815"
                     /db_xref="MIM:618700"
     exon            1..73
                     /gene="CPHXL"
                     /gene_synonym="CPHXL1"
                     /inference="alignment:Splign:2.1.0"
     CDS             49..1266
                     /gene="CPHXL"
                     /gene_synonym="CPHXL1"
                     /note="cytoplasmic polyadenylated homeobox 1"
                     /codon_start=1
                     /product="cytoplasmic polyadenylated homeobox-like
                     protein"
                     /protein_id="NP_001342542.1"
                     /db_xref="CCDS:CCDS86543.1"
                     /db_xref="GeneID:105371346"
                     /db_xref="HGNC:HGNC:51815"
                     /db_xref="MIM:618700"
                     /translation="MNLDGTSGGFPAEEDHHNEERQTKNKRKTKHRHKFSEELLQELK
                     EIFGENCYPDYTTRKTLAIKFDCPVNVIDNWFQNKRARLPPAERRRIFVLQKKHDFPV
                     QAHSFLSCQETQAAAHNYATKQSLSGAQRALMRRAGCSHLEKQWIPSQEMGYNCFSLE
                     NQETPSQQVGPQCSYLEKPGIPSQQVGSQCSYLEKLGIPSQQVASQSSYLVTGTEKHP
                     GCAMGYGGDTGSGHSGSGHSTAYHFLSYNSAECLHPPPSSVPYFHGERTETKESQHAS
                     PFLLDYAQGAYGVKKDHCLCSFCLSLLGQQQQNDWQYHLQQHQQPQNYLEGMMLQEQL
                     PMDSGPWDLGKQWSSAQSQLQSQLPQNNGKPLCSQLQHMSLQIAADSPLLPLGQDMQE
                     RASEQPRTQMQQL"
     exon            74..267
                     /gene="CPHXL"
                     /gene_synonym="CPHXL1"
                     /inference="alignment:Splign:2.1.0"
     exon            268..1359
                     /gene="CPHXL"
                     /gene_synonym="CPHXL1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctcagttgc ttgctggtct ccgtgaagtc caggtcttct accccaagat gaatttggac
       61 ggcacttcag gtggtttccc agctgaagag gatcatcata atgaagaaag acaaacaaag
      121 aataaaagaa aaacaaaaca ccgacataaa ttttctgaag aattactgca ggaacttaag
      181 gaaatatttg gagagaactg ttatcccgat tacacaacta ggaaaacact ggccatcaaa
      241 tttgattgtc cggtaaatgt gatagataat tggttccaga ataaaagagc cagacttcca
      301 cctgcagaaa gacgcagaat atttgttctt cagaaaaagc atgattttcc agtccaagcc
      361 cattcatttt taagctgcca ggagacccag gctgcagctc acaactatgc caccaagcag
      421 agcctctctg gtgcccagag ggctctgatg agaagagctg gttgctccca tctggagaaa
      481 cagtggattc ccagtcaaga aatgggctat aattgtttct ctttggagaa ccaagagact
      541 cccagtcaac aggtgggccc ccagtgctct tatctggaga aaccagggat tcccagtcaa
      601 caggtgggtt cccagtgctc ctatctggag aaactaggga ttcccagtca acaggtggcc
      661 tcccagagtt cctatctggt cacaggcact gaaaagcatc caggctgtgc tatggggtat
      721 ggaggtgaca caggaagtgg gcattctgga agtgggcatt ctactgccta tcattttctc
      781 agctacaact ctgcagaatg ccttcatcct cccccatctt ctgtgccata ttttcatgga
      841 gaaaggactg aaaccaagga aagccagcat gcaagtcctt tccttttgga ttacgctcaa
      901 ggtgcatatg gggtgaagaa agaccattgt ctttgctcat tctgtctctc actgctggga
      961 caacagcagc agaatgattg gcagtatcac ctgcagcagc accaacagcc tcagaattac
     1021 ttagagggga tgatgttgca ggaacagctc ccaatggact cgggtccttg ggatctaggg
     1081 aagcagtggt cctcggctca gtcacagctg cagagtcaac tgcctcagaa taatggaaag
     1141 ccgttgtgct ctcaactgca gcacatgtct ctccaaatag ctgccgactc accccttctg
     1201 cctctggggc aagatatgca ggaaagggct tcagagcaac ccaggaccca aatgcagcaa
     1261 ctttaagttg aagagtggac aagggtctgc agcagggaac caaggatgca actctgcaaa
     1321 gtagtgctaa gtgtcagaga aacacagtcg caggtcagg
//
