LOCUS       XM_017010247            4006 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens collagen type IX alpha 1 chain (COL9A1),
            transcript variant X5, mRNA.
ACCESSION   XM_017010247
VERSION     XM_017010247.3
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017010247.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4006
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..4006
                     /gene="COL9A1"
                     /gene_synonym="DJ149L1.1.2; EDM6; MED; STL4"
                     /note="collagen type IX alpha 1 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 74 ESTs, 83 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:1297"
                     /db_xref="HGNC:HGNC:2217"
                     /db_xref="MIM:120210"
     CDS             656..2170
                     /gene="COL9A1"
                     /gene_synonym="DJ149L1.1.2; EDM6; MED; STL4"
                     /codon_start=1
                     /product="collagen alpha-1(IX) chain isoform X5"
                     /protein_id="XP_016865736.1"
                     /db_xref="GeneID:1297"
                     /db_xref="HGNC:HGNC:2217"
                     /db_xref="MIM:120210"
                     /translation="MRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLR
                     GITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPG
                     LPGPKGDTGLPGVDGRDGIPGMPGTKELSKIALLMKGEPGKPGPPGDAGLQGLPGVPG
                     IPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGS
                     PGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGEL
                     GDIGLPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQG
                     PPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGF
                     PGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPAS
                     YGRNGRDGERGPPGVAGIPGVPGPPGPPGLPGFCEPASCTMQAGQRAFNKGPDP"
ORIGIN      
        1 acgcgctgtg gctctaaact tggcctcctg ccagcgcctg attgatcgtg gaactggcag
       61 cttttgcaaa aggacttgtg aaggtgagga tacctctctc taggaggcgt tggcatttcc
      121 tcctcctaga aaacagcagc gggtactggc ttcctgtctc taaccgtgac ctcacagtgc
      181 acgctgtgaa ctctcagccc cactggggcc agagggggta cggatggcaa tagattgtac
      241 tggcttcggc ttacctgctg tgagcccact ggcaggctcc tggaagctag ccttcgccct
      301 tgctctttca ccggcactcc ctgcattaat ttagaaaaag atcctgcagg gattaacagg
      361 acctgatgga tcccctggct ccattgggtc aaagggacaa aaaggagaac ctggtgtgcc
      421 tggatcgcgt ggatttccag gccgtggtat tcctggaccc cctggtcctc ctgggacagc
      481 aggactccct ggagagcttg gccgtgtagg acctgttggt gaccctggga gaagaggacc
      541 acctggcccc cctggccccc caggacccag aggaacaatt ggctttcatg atggagatcc
      601 attgtgtccc aatgcctgtc caccaggtcg ctcaggatat ccaggcctac caggcatgag
      661 gggtcataaa ggggctaaag gagaaattgg tgaaccagga agacaaggac acaagggtga
      721 agaaggtgac cagggagaac tcggagaagt tggagctcaa ggacctccag gagcccaggg
      781 tttgcgaggc atcaccggca tagttgggga caaaggggaa aaaggtgctc ggggcttaga
      841 tggtgaacct gggcctcagg gtcttcctgg tgcacctggt gatcaaggac agcgaggacc
      901 tccaggagaa gcaggtccca aaggagatag aggggctgaa ggtgctagag gaattcctgg
      961 tctccctggg cccaaaggag acacgggttt gccaggtgtg gatggccgtg atgggatccc
     1021 tggaatgcct ggaacaaagg aactcagtaa aattgccctg ttgatgaaag gtgaaccagg
     1081 aaaacctggg cctcctggtg atgcaggatt gcaggggtta ccaggtgtac ctggaattcc
     1141 tggtgcaaag ggtgttgctg gtgaaaaggg tagcacaggt gctccaggga agcctggtca
     1201 gatgggaaat tcaggcaaac cgggccaaca ggggcctcca ggagaggtgg gaccccgagg
     1261 accccagggg cttcctggca gtagaggaga attaggacca gtgggatccc caggcctacc
     1321 aggtaaactg ggttctctgg gtagccctgg cctccctggc ttgcctgggc cccctggact
     1381 tcctggaatg aaaggtgaca ggggtgtagt cggtgaaccg ggtccaaagg gtgaacaggg
     1441 tgcctctggt gaagaaggtg aagcaggaga aaggggggaa cttggagata taggattacc
     1501 tggcccaaag ggatctgcag gtaatcctgg ggaacctggc ttgagagggc ctgagggaag
     1561 tcgggggctt cctggagtgg aaggaccaag aggaccacct ggaccccggg gtgtgcaggg
     1621 agaacagggt gccaccggcc tgcctggtgt ccagggccct ccgggtagag caccgacaga
     1681 tcagcacatt aagcaggttt gcatgagagt catacaagaa cattttgctg agatggctgc
     1741 cagtcttaag cgtccagact caggtgccac tgggcttcct ggaaggcctg gccctcctgg
     1801 tccccccggc cctcctggag agaatggttt cccaggccag atgggaattc gtggccttcc
     1861 gggcattaag gggccccctg gtgctcttgg tttgagggga cctaaaggtg acttgggaga
     1921 aaagggggag cgtggccctc caggaagagg tcccaacggt ttgcctggag ctataggtct
     1981 cccaggtgac ccaggccctg ccagctatgg cagaaatggc cgagacggtg agcgaggccc
     2041 cccaggggtg gcaggaattc ctggagtgcc tggacccccg ggacctcctg ggcttcccgg
     2101 tttctgtgag ccagcctcct gcaccatgca ggctggtcag cgagcattta acaaagggcc
     2161 tgacccttga aaggcttact gctgcatggc tgtctgcatg aaccacgcct ggtgaaggag
     2221 cctgggtgag aaacaccatc caaagctggg gcaaagatga ttaccttcag catgattaca
     2281 atgtattacc ttcagtatga ttacagaagt cctacttgac aatcacatat agaagaacgg
     2341 tgctattcag taagttctct ttcctttccc ttggagggaa gacagcagag tcatcagtta
     2401 aaaaaaaaaa aagaaaacca aacacctccc ttgaataaat ttatactcct gttcccagga
     2461 tcttgagctt tagtgtgcta tacctatgtg tcttatcgtg ggccactgtg ccaataaaca
     2521 aaaacaactg tttggtttac ctcagttgca gtagttattt tcatttagaa gttgttctca
     2581 gattattgtt tcagttatat agaggattac tagactagtt atgaagaaac cccactacat
     2641 tcaatggaat tggtgcttaa aatctcatcg atgtgctgtc tctggagtga taagaaaggg
     2701 ctacatctcc cgaaatgatt tctttacgtc atgtattggt ttccttcttc accttgaact
     2761 tttgttgaac tgtatgtact ttaccccaaa cctgttaata ttttgagcgc ttctatgtga
     2821 aagcaaagaa ataattttaa tactctggca ttcataaatt ttattgatga gattatttat
     2881 tttaaaggtt tgaggtaaca tctctggttg taccaaagaa gaaataaata tggtttctta
     2941 atctcttgca tgttttctta taaataatca tgttcaatga aaagaagtta ctgagcttat
     3001 ttagatacat taaacattac ttaactactg gttctatagg tgtatgttta taatattagt
     3061 gttttttcta cataaagtaa tttaaaaagc tgttccacag agggtgttac cctgtgacag
     3121 atgcgtatgt gtgtgtgtgt gtgtgtgtgt gtgttttagt gtgtatggag agagcttcat
     3181 ggaccttttc gaaatgttaa ttccctagaa agatgtgcag ctgcatgcgc atctatattt
     3241 ttgtatagta tttcagagat ttcgtggact tttttaagtc tagccttgct ttatttctag
     3301 gttaagaacc actgccttca ttccaatggc ttgttagctc cctcctactc agaactttat
     3361 tgtaaacatg atttatgttt caccatttct tgtaaatttt ataaatgcag ctcagctaaa
     3421 gcactgtatt cttaacaagt atttcctgac cacttaagca ctttattatt atctgtgtaa
     3481 tcatattggc ttgctgtttc attaacatct acttaactat ccaacagact taatatattc
     3541 attttatatc acagagcctg tgagtaacct gtgctggggc ataaaacaat agctcaacat
     3601 agtatcttta gttagtttat ggaactaaat tctgtcaagt caaaggagag tgagccctaa
     3661 tataattttt tatatatatt tttctcgtgt gtacttttat acattttaaa ttctagtcct
     3721 agttgtttgg ttaaatcaat cattatgtaa tctgtatttg gatttcttta aaactgctta
     3781 cagcatctag ttttatgctt ctagcatgaa ttttgcttaa gaagattcca actttgccat
     3841 atagatcagt gctatttaca tagactgaaa gaatgttctt tccctttttt caaatatgac
     3901 ttttgaaaat aaaggtctct gttatagctc cctaaaacaa tccttaaaaa aatggcaaac
     3961 tttttcagga gctgtgacac ataattaaat aaaggcatag aaatta
//
