LOCUS       XM_006717310            5169 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens collagen type XXVII alpha 1 chain
            (COL27A1), transcript variant X12, mRNA.
ACCESSION   XM_006717310
VERSION     XM_006717310.4
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000009.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_006717310.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5169
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
     gene            1..5169
                     /gene="COL27A1"
                     /gene_synonym="STLS"
                     /note="collagen type XXVII alpha 1 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 17 ESTs, 636 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 44 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:85301"
                     /db_xref="HGNC:HGNC:22986"
                     /db_xref="MIM:608461"
     CDS             90..3353
                     /gene="COL27A1"
                     /gene_synonym="STLS"
                     /codon_start=1
                     /product="collagen alpha-1(XXVII) chain isoform X11"
                     /protein_id="XP_006717373.1"
                     /db_xref="GeneID:85301"
                     /db_xref="HGNC:HGNC:22986"
                     /db_xref="MIM:608461"
                     /translation="MENEACLAFLARGARWGFPGVFGERGPPGLDGNPGELGLPGPPG
                     VPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGS
                     QGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGAR
                     GLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPGRPGPVG
                     EQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGP
                     PGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHL
                     GSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAG
                     MKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGL
                     MGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTP
                     GPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAE
                     GPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGWPGPKG
                     SKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQ
                     QGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRT
                     GLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEG
                     IVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQDDL
                     GAAFQTWMDTSGALRPESYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPA
                     RVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAIS
                     RVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFR
                     PEVSMDGCKVQDGRWHQTLFTFRTQDPQQLPIISVDNLPPASSGKQYRLEVGPACFL"
ORIGIN      
        1 ggggttacct ggaccggtag gagatcccgg ccccaaaggc agcaggggct acattgggct
       61 cccagggctc ttcggcctgc cagggtctga tggagaacga ggcctgcctg gcgttcctgg
      121 caagaggggc aagatggggg tttcctggag tctttgggga aagaggccct cctggactgg
      181 atggaaatcc tggagaactg ggcctgccag gcccccctgg agtccccggc ctcattggtg
      241 acttaggagt gttgggtccg attggctacc cgggacccaa gggcatgaag ggactgatgg
      301 gcagcgtggg ggagcccgga ctgaaaggtg ataagggtga acaaggggtt ccaggtgtgt
      361 caggagatcc cggattccaa ggagacaagg ggagccaggg gttgccaggg ttccccggtg
      421 cacgggggaa gccagggcct ctgggcaaag tcggagacaa aggatccatt gggtttcccg
      481 ggccccctgg acccgaggga ttcccaggag acatcggccc ccctggcgac aatggcccag
      541 aaggcatgaa gggtaagcct ggagcccgag gcctgccggg accccgtggg cagctggggc
      601 ccgagggaga tgagggaccc atggggccgc caggggcccc tggcttggag ggtcagcctg
      661 gcaggaaggg gtttcctggg aggcccggcc tggatggcgt gaagggggaa ccaggggatc
      721 ctggtcggcc ggggcctgtg ggagagcagg gatttatggg attcattggt ctggtcgggg
      781 agccaggaat cgtgggagaa aagggtgatc gtggcatgat gggaccccca ggcgtgcctg
      841 gacccaaggg gtcgatgggt catcctggaa tgccaggtgg tatggggacc cctggagagc
      901 ctggacccca gggtcctcca ggatctcgag gcccaccagg catgagggga gcaaagggac
      961 gtcggggccc ccgaggaccg gacggaccag ctggggagca agggtccagg ggcctgaagg
     1021 gccctccagg accccagggc agaccgggcc ggcctggaca gcagggtgtg gctggtgagc
     1081 gaggccactt gggctcgaga ggctttcctg gcatcccggg tccctcaggc cccccaggca
     1141 ccaagggcct cccaggagaa ccgggccctc agggacccca ggggccaatt gggcctccag
     1201 gagagatggg acccaagggg ccgcctggtg cagtgggaga accgggcctt cctggggaag
     1261 ccgggatgaa gggtgacctt ggacccctgg gcactcctgg ggagcagggc ctcattgggc
     1321 aacggggaga gccaggcctt gagggtgaca gtggccccat gggacctgat gggctgaagg
     1381 gggacagggg agacccaggg cctgatggag aacatggcga gaaaggccag gaagggctga
     1441 tgggtgagga cgggcccccc ggcccccctg gcgtcactgg tgtccggggt cctgaaggaa
     1501 aatcagggaa gcaaggcgag aagggccgca ctggagccaa gggtgccaag ggctatcaag
     1561 gacagctggg tgagatgggc gtccctggag accctggacc ccctggcact ccaggcccta
     1621 aagggtcccg gggcagcctg ggaccaacgg gtgctccggg acgcatgggg gcccaaggag
     1681 aaccgggact ggctggttat gatggacaca aaggcattgt gggacccctt ggacctcctg
     1741 gaccaaaagg cgaaaagggg gagcagggcg aggacggcaa ggctgagggg ccccctgggc
     1801 cacctggaga tcggggccct gtgggtgatc gaggagaccg cggggaaccg ggagaccctg
     1861 ggtaccctgg acaggagggt gtgcaaggcc tccgtggaaa gccaggccag cagggccaac
     1921 ccgggcatcc gggaccccgg gggtggccgg gacccaaagg atcgaaaggc gcagagggac
     1981 caaagggaaa gcaaggcaag gcaggggccc caggccggag gggggtccag ggcctgcagg
     2041 ggctgccagg gccccggggc gtggtgggga gacagggcct cgagggcatc gctggaccag
     2101 atgggcttcc tggcagggac gggcaagcag gacagcaggg ggagcaggga gacgatgggg
     2161 accctggccc catgggccct gctgggaaga gaggaaatcc aggtgtggcc ggcttacctg
     2221 gagcacaggg acccccagga ttcaagggtg agagtgggtt acccggacag ctgggtcccc
     2281 ctggcaagcg aggaacagag ggcagaacgg ggctccctgg aaaccagggg gagcctgggt
     2341 ccaaaggcca gccgggcgac tctggcgaga tgggcttccc aggaatggca ggtctcttcg
     2401 gacccaaggg cccgcctgga gacattggct tcaaaggcat ccagggccct cgggggccac
     2461 ctggcttgat gggaaaggaa ggcatcgtcg ggcccctcgg aatcctggga ccttcgggac
     2521 tcccgggtcc gaagggtgac aaaggcagcc gtggggactg gggattgcaa ggtccgaggg
     2581 gtcctcccgg ccccagaggg cggcccggcc ccccgggtcc tccagggggt cctatccaat
     2641 tgcaacaaga tgatcttggg gcagctttcc agacgtggat ggacaccagt ggagcactca
     2701 ggccagagag ttacagctat ccagaccggc tggtgctgga ccagggagga gagatcttta
     2761 aaaccttaca ctacctcagc aacctcatcc agagcattaa gacgcccctg ggcaccaaag
     2821 agaaccccgc ccgggtctgc agggacctca tggactgtga gcagaagatg gtggatggta
     2881 cctactgggt ggatccaaac cttggctgct cctctgacac catcgaggtc tcctgcaact
     2941 tcactcatgg tggacagacg tgtctcaagc ccatcacggc ctccaaggtc gagtttgcca
     3001 tcagccgggt ccagatgaat ttcctgcacc tgctaagctc cgaggtgacc cagcacatca
     3061 ccatccactg ccttaacatg accgtgtggc aggagggcac tgggcagacc ccagccaagc
     3121 aggccgtacg cttccgggcc tggaatggac agatttttga agctgggggt cagttccggc
     3181 ccgaggtgtc catggatggc tgcaaggtcc aagatggccg ctggcatcag acactcttca
     3241 ccttccggac ccaagacccc caacagctgc ccatcatcag tgtggacaac ctccctcctg
     3301 cctcatcagg gaagcagtac cgcctggaag ttggacctgc gtgcttcctc tgacctctga
     3361 cctcgtggcc actctaggcc tcacggagga gggaagagga agaggcaagg ggagggtact
     3421 gaggggcaga tggctccagg agaggcagct cccctgccca agggtccttg ggcagacccc
     3481 agctgttgtc tgcccagtag aagtgggtgg gggtaggagg ggatagggtg tccttgggaa
     3541 caatggatcc cagcttagcc ccaaagacca accaaagagc cagccagagt aagctggacc
     3601 tgcaacctgc ctgagccccg tggcctctca gctctgcggc caccccgttc cctccccagc
     3661 ttcctgccca aagagcccca cattcaagcc aacttgaggg aagggggcgt ctcgtcagct
     3721 ggtccctgct agggagctat tgatgtgcaa tattagaaag gagacatgaa aaaaggagaa
     3781 aaggaaagac agaagtgtat atatatatta tttaaacaaa caaaaagaag gtgcgttact
     3841 attttttttt cacccgggaa agaggtgaga ggatgggaag gagcagccag gcgtgggaag
     3901 cggcgagatc ctcgggctgg gggtgcccac gtttgctacc tcccactgtg aaatcgctgg
     3961 tgctcacaat tgtctctcac agtgtatgtg atttttttaa ggaaaaaaaa aaatccctat
     4021 ttaagattct gaaggtgcta ccattatttt gccacagact ttgaagaaac ttttggatgt
     4081 ggggcatcat ccgcatcttt ctctctcctc caaatgacaa agtttgggga atttttgaat
     4141 tttcctagca tcgcccttgt gctcatcagg taatctgcta aggaggaaaa aagaaaagaa
     4201 aaaaggaaaa aaaaaaaaaa aaagcaaaac aaaaacaaaa acaaaaaccc taccagaaac
     4261 cagaagtaga gagatttacc atataactta tggactttga aatgtctgtc cttttaaggc
     4321 agcagggagg cctgggtgcg aagcatgttg gcttggccct tcacggtcct ggagggaggt
     4381 gaggctggcc ttggaaggcg tgccctggag aggtcttggg tgaaaacttg accttgaaga
     4441 aaccaatcac aaaagcggcg ttgggtcagg gctaggctta gaggtgaagc atcaacatgg
     4501 aaccatctca ggaagccgca tcgcctcttc cgaggtcctc acttccagga gcctgtcctt
     4561 gcaagatgca atcatcgttc ctgctttttc attgtcatta aattctgtag aaacccattg
     4621 tcattagctc caagtgtaaa tttgggtcaa ggagacagaa taataatggg aatctcggag
     4681 ttcgacacca tagtgacgtt cagcgtcctc tgaattgtgc tacatcagcg aacaagtcgg
     4741 cgcttgaatt ggattttgag gttattttaa ccatggaatt atttttatag aaggggaaaa
     4801 tgtatgtgaa agtctctatt tgtgtatttc tctcctaaag ttgtgtctct ttgggaattg
     4861 gatttgattt ttattattta atacctcact ttggcccgtc ccccctccca acacttctgt
     4921 atcctcgccc tgccgcccca gcctggacgc tctgcgtgga agtgcgtgtt tgtagcagct
     4981 cgggcctcat ctcagcgctc ggatccctcc tgctgccaga atccactggc ctctgtctca
     5041 ttcttgggtt ttcctgctgt cttcgtttac gtctctgtcc acatgtcagt gtattaaaac
     5101 cccaatgggt tccgtttctc cttttcccct ctggatttta aataaatatt taaaactgag
     5161 gcaatggaa
//
