LOCUS       XM_011532358            7088 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens collagen type XXV alpha 1 chain (COL25A1),
            transcript variant X7, mRNA.
ACCESSION   XM_011532358
VERSION     XM_011532358.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000004.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 6, 2016 this sequence version replaced XM_011532358.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7088
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="4"
     gene            1..7088
                     /gene="COL25A1"
                     /gene_synonym="AMY; CFEOM5; CLAC; CLAC-P; CLACP"
                     /note="collagen type XXV alpha 1 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 3 ESTs, 128 long SRA reads, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:84570"
                     /db_xref="HGNC:HGNC:18603"
                     /db_xref="MIM:610004"
     CDS             279..1886
                     /gene="COL25A1"
                     /gene_synonym="AMY; CFEOM5; CLAC; CLAC-P; CLACP"
                     /codon_start=1
                     /product="collagen alpha-1(XXV) chain isoform X4"
                     /protein_id="XP_011530660.1"
                     /db_xref="GeneID:84570"
                     /db_xref="HGNC:HGNC:18603"
                     /db_xref="MIM:610004"
                     /translation="METMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
                     RGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSIGAPGIPGMNGQKGEP
                     GLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGR
                     PGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRGERGEPG
                     APGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHE
                     ALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGE
                     KGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKG
                     EPGLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPHGPAGPKGERGE
                     KGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGEKGKKGKKGPKGEK
                     GEQGAPGLDAPCPLGPDGLPMPGCWQK"
ORIGIN      
        1 gagtgctggg attacagtgt tgggactcaa cgccaatttc aaatcctgct atcaagctgc
       61 ctccagattg ctgctaggaa ccctttcaac ttgaaaatcc caggcctctg tgaataagac
      121 tgaaaaagct ggggaacaca agcacaaata gccttaatga atatactact cattgggtac
      181 tgaatgtatt gcctgagaaa agggaatgga tataacacaa tggaaagaaa taaattatga
      241 gaaaattatt ttaacacttt ccagattcag aagctggcat ggaaacaatg gtgtttccta
      301 aaatcaatca tgggtttctc tctgctgatc agcagctcat taaacgccgc ctgattaagg
      361 gtgaccaagg acaggcaggg cctccaggac cccctggccc tccaggccca agagggccac
      421 ctggggacac agggaaagat ggcccccgtg gaatgccagg agtacccggt gaaccaggaa
      481 agccaggaga acaaggcttg atgggtcctc tagggcctcc gggacaaaag ggttctattg
      541 gagcacctgg aattccaggg atgaatgggc aaaagggtga gcccgggttg cctggagcag
      601 taggacagaa tggaatacca ggacctaagg gagaacctgg agaacaaggt gaaaagggag
      661 acgctggaga gaacggcccc aagggtgaca caggcgaaaa gggtgaccct ggatcatctg
      721 ctgcaggaat taagggagaa cctggggaat ctggtcgtcc agggcaaaag ggtgaaccag
      781 ggcttcctgg gcttcctgga cttccgggga taaagggaga accaggtttc attggtcctc
      841 aaggagaacc aggcttacca ggtttaccag gaacaaaagg tgaacggggg gaagcagggc
      901 ctcctggaag aggtgagcga ggggaacctg gagcccccgg accaaagggg aaacaaggtg
      961 aatcaggaac tagaggccca aaggggtcaa agggggatcg tggagaaaaa ggggactctg
     1021 gagctcaggg accaaggggt ccacctggtc aaaaagggga tcaaggagcc actgagatca
     1081 tagactacaa cggcaacctc cacgaagcct tacagaggat taccacctta actgtcacgg
     1141 gtccccctgg acctcctgga cctcaaggac tacaagggcc aaagggagag cagggatctc
     1201 caggaatccc aggaatggat ggagagcagg gactcaaagg ctcaaaggga gacatggggg
     1261 acccaggtat gacaggtgaa aaaggaggaa ttggacttcc tggattaccg ggagccaatg
     1321 gaatgaaagg agaaaaagga gattctggaa tgccgggtcc acagggtcct tctatcatag
     1381 gcccaccagg cccaccaggt ccccatggcc cacctggccc catgggacct catggacttc
     1441 ctggaccaaa gggtgaacca gggttaaatg gtgttaaagg attgaagggt gaaccaggtc
     1501 aaaagggtga cagaggaccc cttggtcttc caggagcatc tggcttagac ggaaagccag
     1561 gatcccgggg tacagatggt cctatgggac cccatggccc tgcaggtccc aaaggagaaa
     1621 gaggtgaaaa aggagctatg ggagagcctg gaccaagagg gccctatggg ctgcctggga
     1681 aagatggaga gcctggtctt gatggcttcc ctggtccacg gggtgagaag ggtgatctag
     1741 gagaaaaggg agaaaagggg gaaaagggaa agaaaggcaa aaaggggcct aaaggggaga
     1801 aaggagaaca gggtgctcct ggattagatg caccctgccc gttggggcca gatggcttac
     1861 ccatgcctgg ctgttggcaa aagtgatgaa tctaaccttt caagcatgaa gttgtgtata
     1921 taagggtcca tttttaatat ttatagttga aaactgaatt gcagatttta caagtctgag
     1981 atatgtttac atagggctgc ttcttcctgc tggcagtagt atacatgtcc atttttactc
     2041 cacttacatc tgaaattggg caatttgtga aaccagtgag aatcctgcaa aaaatataga
     2101 tcagtatctc cttatcttat gtgaagatac gtatttatat ggacaaatca gtggtagaga
     2161 atgattgatt gtactagcta ttttccttct tttggcttgc taattgcatg gacaaaaagt
     2221 gccatgaaat agtttacatg aaatggtgac caaatatgga ctcaaagcta tgaaaatgta
     2281 ctatactgac tgattttaga gctgattatc acattcccat tcacctttca tgtcggcgtt
     2341 gactcatacc tacaccaccc attgaaacta actaaaaaag catgactgtg tgccaaacct
     2401 gcttgctgtg caacttcaga tgctagcatg ttgatcagga gtcctttgat tacatctgaa
     2461 cctttattcc ttttgtcatc tcaagggggt tacaccatgg cttattgcca aaaagagata
     2521 aggtggcgga gagcacacac acaatttgtc ttgtattttg agggagttgc agtcctgact
     2581 gcagatctac agcttccagt attgtgggct catgtggcca ctttggttga aatacgaagg
     2641 ggttgagcct gttgctgcca ccagttttcc ttgggctgcc cttggcagtg aagacatggg
     2701 aagaggaccg attcagcctc cagcactgcc tctcatgtga ccaagtagga aagaggttta
     2761 caaatgcaaa catgcagaac cacagacttt aaaaatatgt ataaataaac tgaatttcag
     2821 caagtgttaa tataggtgct tttaaaaatg acagaggcac agcacttctt ttggaatagg
     2881 agattcttgg aatgggagat cctgtccctg agggaaaagg gatgtccatc ccaccaaaac
     2941 ttgggttgct gaagaaataa catgttctga gaagggatca gccaaaatcg cctctcccga
     3001 tgatatagga gagcttactg ggacaatctg tgccaaagtt gttgtgagag ctttccttcc
     3061 tcctacgatc caaccatgtc aaacatttcc tacaaagttt gagaaacagg tatttttcat
     3121 tctttttaat gcttttttct ttttctttct ttagtcccaa gaatattgaa aaaatattag
     3181 tttcagtttt tgtcacatat gttttgaaca atttttttaa gaagtcttca aatcataata
     3241 atttggctcc agtagtcaaa atgacctttt actaacttct ctcttgtttt ggataattgg
     3301 atagaatata aaagaagctc cactttcagt ctaatcattg taaagcatga aagttatgca
     3361 tttttaagta gttttgactt tttttacatg atgaatgtaa cgtacatgga gattatcagt
     3421 taatataaag ccaagatttt gtcacatttg gtaatattaa ctaatttcta tttttatggt
     3481 tttaagtttt gtctatattt agatttcttt ctctttttaa catttctaaa tgtttgtctc
     3541 atcctcatat ccacagacca aatctaagat ctcagaaagc tgtgaaatat agttgccata
     3601 aagaaaatat ttttcatcta cttgctcaaa ctttacctaa ccatattaga tggaacattt
     3661 ctttgcacag taaagagttg gtagcgtgtt ttgaaatggc ttattctaag tggaagtgtt
     3721 acattgaaag aaacattatc aatgaggagt aggcaccctt tcagcccatt agagaattta
     3781 atttctctcc tgactcaatg ccatcttctg ggaagatttc tagtttcatg cataggtgtc
     3841 accaccagaa gggaaattaa ctcatccttg gcttatagtt aagatataac cataagacaa
     3901 ggaacctaaa atcctcatga tctcatttat gttatgtaac caaatgacag tcatacaaaa
     3961 tggcatcttc ttttttttct attaaatttt taaggttgaa agatgtttaa actattagat
     4021 cagtctaatt ggtaacattt ctggtaacat tccacacccc taagccagtt tagcattttg
     4081 aaaataatgg aggacatttt ctaacaattt cttgtatggc atggtgttag gataacgtat
     4141 tgctcaatgt ctgacacaat ttgtcttaaa tggtttggaa aaatgaactg aagtgggtgg
     4201 aactacattc tcttcaggaa aacaaactac agtgtccagt ggctatattt ttttcccttc
     4261 tatctttttt tctgctcctc tagtagaaag aggtggattg aaatggatca ctatttaaaa
     4321 cttgcacagc ttcaggagac gatacctcaa catcaaaaga aaaacacttt atgtataaaa
     4381 aaattttttg aaatacagcc cttcaaagaa tactattctg tcctgtgtgt atattgagtt
     4441 tttgctctat aactgatttg acaacatcaa cttatttcat gattaaatga ggttgtaaac
     4501 tttcattaca tttatttcct tgggaaaaac aaagggatgg aaatactcct ccttgttcag
     4561 tggaattgct aggtcttaac catgatggat aatctttaac ttttggttac tacaatgttt
     4621 tcaagcatcc attttgtcat atagagaatt cttaaataat ttctaagtga atgaaagaat
     4681 tgtgtttgtt gatatgtgtt gatagataat atactttcct taaagatttc tttaatgtgt
     4741 gttattggat agagggttga gaaaatatac atgaaagaca cattggaaat aaggcaaggt
     4801 cagtttctat ttctaataaa acattgaagg atagcaaatt gatatgtgtt ttagatttaa
     4861 aattgttttt catttatgtt ggttggtgct aatgtatctc ttttcctttt tctctatgga
     4921 caatacaact actatggata attttatttc cctgtttaat agcattccta aatcattagt
     4981 gtgttatttt atttttaaag ttcatgaatt tgctataatt atggtccaat gaccaggctt
     5041 tcttaatgta aaacaaaaca gtgtaccaat agatgatgtg tgtttactcg gatcatggat
     5101 cctcctattt catattcatt tcatacatca tatgccttta tctactttca tgtgtctcat
     5161 ctttttcatt cactcgtctt ttagtttata tgatttgatg aaacatgaca aaactagcat
     5221 cagagaagtc tgcacacacc gtatagagta cctagtgcac aaatatacct aattttttct
     5281 ttcagttttt gtttttcatt agcaaaagca gtcttggagg attttttttt ctcatgtgat
     5341 tttatagagg acattagaat atctttaatt cctaccagaa gaaaggtctt gtttttgaat
     5401 ttacattctg tgcatacgat gttctgatgg gacagcaaga acttacacat caactagttt
     5461 atactacatg tcctttgtct aactatctat ctatatagac atatgtgcta gtttagaaaa
     5521 ttgtcaaatc agcatgtcag taccaatgga aaaattgtct ttgatatgtt atatttttct
     5581 cacttaggaa atgtgcttaa tttccaaggg tttttttttt taatgttact attgaagcat
     5641 gaaaagttaa catcatttgt tatcctttct ttccccacta tatattgtct tacccagagt
     5701 agggctatac tttggtggtg ttttaacatc ttctaataag tgatcataag caacatacag
     5761 atgctaatat ttgaaatctt gttttttctt acttcctaat aatcaaatta tattaatatt
     5821 tcacactaca aaaaaatagg attttctaat ttgtaaaaac aagagctcct gctatctctt
     5881 ggaagttaag tccttaggaa ccctatctta tctttctaaa aataataagt aagaacaatc
     5941 acatgtgatt ctggctatta aaatcataca tccctagtgg aattaacaag cttgaccaat
     6001 tatgattatg ctaaattgtt ttaggctagg aggactgtca gtccctactt cttcccattt
     6061 ttcttgggat atctttatat tggctagatt tgttgccaat ataaaattga cacagcagag
     6121 acactcctct aacttaaatt tttagtggag tttggttttt gctaaccccg tactaataaa
     6181 cactttaatg acttttttca tttcaaaata tttaaatgta taaaattgcc tatgctgctt
     6241 attgaaagaa ccgtcctttt gggcataaga agactttttc aacctaaacc gttatgtgtg
     6301 atttattaac aacttaacaa agaaagtacc aacatctctc aaaatgtagt tgatattctt
     6361 acctatctca gaaatattaa cgaattggat tcacaaaaga atgtcttaca tactgttgac
     6421 atttatgtga atattcttta tactgttgta aatgtttcat tcaacttaat aacattttaa
     6481 aagatgtatg tatctgattt ttctttagaa aatattatat ttttatttgt attttttaca
     6541 ttttaaagtt catctctatg tgcagctatt tttatattgc caaaaactca cataaataca
     6601 aaataagtga aatatgcaaa aaaaaatatt ttggcaagca ttacactgca tattttttta
     6661 aatgtttgtg ggccagtctc atacaattga ttattctaag aatgtgttgt gtcttatcac
     6721 tgtaaatatg gcacaaacct gtttatctca gtagtgtaaa taattgaaag attgaattct
     6781 ccctgttcaa tttttatttt aatttccttg taatttctcc agctgacatt actgtatcaa
     6841 aagatgcata agatttttga tttgcggttt ggagataatt gcattgtgtt cagtttccag
     6901 tttgttttta tttgcttttt aaatttgttt tcagggttcc tagtttgtga gaagttgatc
     6961 ttcagaatta tttttacact atttatgact tattttcata atgtaaaaag tgtgtaatta
     7021 ttacaatatt aatccaaaca atgataatga attgtattgt tataaagctt tattgatgtt
     7081 catgaaaa
//
