LOCUS       XM_011514299            5780 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens collagen type XI alpha 2 chain (COL11A2),
            transcript variant X3, mRNA.
ACCESSION   XM_011514299
VERSION     XM_011514299.3
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_011514299.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5780
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..5780
                     /gene="COL11A2"
                     /gene_synonym="DFNA13; DFNB53; FBCG2; HKE5; OSMEDA;
                     OSMEDB; PARP; STL3"
                     /note="collagen type XI alpha 2 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 61 ESTs, 38 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:1302"
                     /db_xref="HGNC:HGNC:2187"
                     /db_xref="MIM:120290"
     CDS             300..4796
                     /gene="COL11A2"
                     /gene_synonym="DFNA13; DFNB53; FBCG2; HKE5; OSMEDA;
                     OSMEDB; PARP; STL3"
                     /codon_start=1
                     /product="collagen alpha-2(XI) chain isoform X3"
                     /protein_id="XP_011512601.1"
                     /db_xref="GeneID:1302"
                     /db_xref="HGNC:HGNC:2187"
                     /db_xref="MIM:120290"
                     /translation="MTWQASPSPGRRPSPTAGFDPAWEQPPLSRCPARRAASPTAWPR
                     PRTRGSSYRQDPTPGEEEEILESSLLPPLEEEQTDLQVPPTADRFQAEEYGEGGTDPP
                     EGPYDYTYGYGDDYREETELGPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGMLVE
                     GPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRF
                     GSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESG
                     DLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGH
                     RGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMD
                     GPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDG
                     PPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGF
                     KGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP
                     GRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKG
                     TSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP
                     PGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD
                     GPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG
                     PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQ
                     KGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP
                     GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPG
                     EKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGP
                     VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSP
                     GSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATG
                     QAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQ
                     KGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEV
                     IQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQMR
                     RPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPR
                     DDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGAARDGPLRLRGANEDEL
                     SPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPV
                     CFMG"
ORIGIN      
        1 cctattatga tgtgatgact acggggacaa cccctgatta tcaggtaaac tcaagggacc
       61 ccttcatttc ttccctttct cccagcaccc ccagcaatca tctcctagga caccttcctc
      121 ccctccccca tgccgtgggg agaggcacag tgtgtttaga ttatggggat ttacttagtt
      181 cctgccccct ccctgtctct ctgctgcagc gccctgggag cccccaccac aggcctcccc
      241 cttcccctag ggggcatcgg acccctccct gaaagcctac cccacctgcc aagaggtcaa
      301 tgacctggca ggcgtccccc tcaccaggcc ggaggccctc tccaactgca ggctttgacc
      361 cagcatggga gcagcctccc ctttcccgat gcccagctcg gagggcagct tcccccactg
      421 cctggccccg ccccaggacc agaggcagca gttaccggca ggaccccacc ccaggtgaag
      481 aggaagaaat cctggagtcg agcctcttgc caccccttga ggaggagcag acagatctcc
      541 aggtcccccc cacagccgac aggttccagg cagaggaata tggggagggt ggcacagacc
      601 cccctgaagg gccctacgat tacacctatg gctatgggga tgattatcgt gaggagacag
      661 agcttggccc tgccctctct gcggagacag cccactcagg agccgctgcc catggacccc
      721 gagggctgaa gggagagaaa ggagagcctg cagtgttgga acctggtatg ctcgtggagg
      781 ggccccctgg cccagaaggc cctgcgggat tgattggtcc ccctggcatc caggggaacc
      841 caggcccagt tggagaccct ggagagaggg gcccccctgg ccgagcaggg ctccctggat
      901 cagatggggc tcctggtcct cctggcacat ctctcatgct cccattccgg tttggcagtg
      961 gtgggggtga caagggccct gtggtggcgg cccaggaggc tcaggcccag gcgatcctgc
     1021 agcaggcgag gctggcgctc cgtggacccc ctggccccat gggatacaca gggcgccctg
     1081 gacccttggg ccaacctggg agccctggcc tgaaaggaga gtctggagac ttaggacctc
     1141 agggccccag aggacctcag ggcctcacag gccctcctgg caaggctggg cgaaggggcc
     1201 gggcaggtgc tgatggagcc cgagggatgc ctggagatcc tggagtgaag ggtgaccgag
     1261 gttttgatgg actcccaggg ctccctggag agaagggcca taggggtgat actggtgccc
     1321 agggccttcc tggtccccct ggtgaggatg gagagagggg agatgacggg gagattgggc
     1381 ctcgagggct gcctggagag tcgggacctc gaggtctcct tggccccaaa ggcccacctg
     1441 gtattcctgg accccctggc gtccgaggca tggatggtcc ccagggcccc aaagggagct
     1501 tgggacccca gggagagcca ggacctcctg gacaacaggg cacccctggg acccagggtc
     1561 ttcccgggcc ccagggtgcc atcggccctc atggagagaa gggtcctcaa gggaagccag
     1621 ggctccccgg catgcctggc tcagacggac ccccgggtca cccagggaag gaaggtcccc
     1681 ctggaaccaa aggaaaccag ggtccctctg gacctcaggg acctctagga tacccaggac
     1741 ctcgaggggt caagggtgtg gacggaattc ggggtctgaa gggtcataag ggtgagaagg
     1801 gtgaggatgg ctttcctggg ttcaaaggtg acataggcgt gaaaggtgac aggggcgaag
     1861 ttggagtccc tggttccagg ggagaggatg gtcctgaggg gccaaaggga cgcactggac
     1921 cgactggaga ccctgggccc ccagggctca tgggcgagaa gggcaagctg ggtgttcctg
     1981 gtctgcctgg ctatcctgga cgtcagggac ccaaggggtc cctaggattt cctggctttc
     2041 ctggtgccag tggagagaag ggagcccggg gcctgtcggg gaagtcaggg cctcggggag
     2101 aacggggccc cacgggtcca cggggtcagc ggggaccccg aggtgccact gggaagtctg
     2161 gagctaaggg aacatctggt ggtgatggcc cccatgggcc ccctggagag aggggcctcc
     2221 ctggacctca gggtcccaac gggtttcctg gaccgaaagg acccccgggc ccccctggga
     2281 aggatgggct gccgggacac ccaggccaaa gaggagaagt gggtttccaa gggaagaccg
     2341 gcccccctgg tcctccagga gtggtgggac ctcagggagc agcaggagaa accggcccta
     2401 tgggggagag aggtcaccca ggccccccgg ggccccctgg agagcaggga ctacctggga
     2461 cagctggaaa agaaggaaca aagggtgacc ctggtccccc tggggcccca gggaaggatg
     2521 gtcctgctgg tctgagggga ttcccaggag agagaggcct cccaggcact gctggtggac
     2581 ctggtttgaa ggggaatgaa ggtccgtctg gcccccctgg ccctgcaggc tcccctgggg
     2641 aacgaggtgc agcaggatca gggggaccca ttggtccgcc agggcgccca ggcccgcagg
     2701 gtccccctgg agcagcagga gagaaaggtg tcccaggtga gaagggcccc attggcccga
     2761 ctggccgaga tggagtgcag ggtcctgtgg ggcttcctgg tcctgctggg cctccaggtg
     2821 tggctggaga ggatggagac aagggtgagg tgggggaccc cggacagaag ggcaccaaag
     2881 ggaacaaggg tgaacatggc cctcctggac cccctggacc cattggtcct gtggggcagc
     2941 ctggagcagc gggagcagat ggggagcccg gagctcgggg accccaggga cactttggag
     3001 ccaaaggtga tgaaggaaca agaggattca atgggccccc aggacccatt ggcctacagg
     3061 gtttgccagg cccctctggg gagaagggag aaacaggaga tgtgggtcct atgggaccac
     3121 ctggcccccc aggacctcga ggtccagctg gacccaatgg cgctgatggc ccacaaggtc
     3181 ccccaggagg tgttgggaac ctgggtcccc ctggagagaa gggggaacca ggagagtcag
     3241 gatctccagg gatccagggc gagccaggtg tcaagggtcc acgcggggaa cgtggagaga
     3301 aaggagagtc ggggcagcca ggagagccag ggccaccagg gcctaaaggc cccacaggcg
     3361 atgatggccc caaagggaac cctggtcctg ttggttttcc tggtgaccct ggcccccctg
     3421 gagaaggtgg ccctcggggc caggatggtg ctaagggtga ccgaggcgag gatggtgagc
     3481 caggacagcc tggatcccct ggtcccaccg gggagaatgg acccccaggg ccacttggaa
     3541 agcgaggtcc tgctggctcg cctggttccg aggggcgaca aggagggaag ggagccaagg
     3601 gagatcctgg cgctataggt gccccgggga agacaggccc ggtgggtcct gcaggcccag
     3661 cagggaaacc tggccctgat ggtctgaggg ggctcccagg ctcagtgggt cagcaaggcc
     3721 gacctggagc tacaggccag gctgggcccc caggtcctgt gggaccccca gggctgcctg
     3781 gtctccgggg cgatgctgga gccaagggag agaagggcca cccaggtctc attggactga
     3841 ttgggccccc gggtgagcag ggagagaagg gagatcgggg acttcctggg cctcagggct
     3901 cccctgggca gaagggtgag atgggtatcc caggagcatc cggccccatt ggtcctggag
     3961 gtccccccgg cctccccgga cctgctggcc ccaaaggagc caaaggagcc acaggcccag
     4021 gcggacccaa gggagagaag ggtgtgcagg gccctccagg acacccgggt cccccaggcg
     4081 aggtgatcca gccactgccc attcagatgc ccaagaagac tcggcgctcg gtggatggaa
     4141 gccgtctgat gcaggaagat gaggccatac cgaccggggg agcccccggc agtcctgggg
     4201 ggctggagga gatctttggc tcactcgact ccctgcggga ggagatcgag cagatgaggc
     4261 ggccaacagg gacccaggac agccctgctc gcacctgcca ggacctgaag ctgtgccacc
     4321 cagagcttcc cgatggagag tactgggtcg accccaacca gggctgtgct cgggatgcct
     4381 tccgagtttt ctgcaacttc acagcagggg gtgagacctg tgtgacgcct agggatgacg
     4441 tcacgcagtt ctcttacgtg gactcagagg gctccccagt gggtgtggtc cagctcacct
     4501 tcctgcggct gctcagcgtc tcagcccacc aggacgtctc ctacccctgc tctggagcag
     4561 cccgtgacgg tcccctgaga ctccgtgggg ccaatgagga tgagctgagc ccggagacta
     4621 gcccctatgt caaagaattc agagatggct gccagacaca gcaaggccgg acggtgctgg
     4681 aggtgcgaac gcctgtgctg gagcagctgc cagtgctgga tgcctccttc tcagacctgg
     4741 gagccccacc gaggcgggga ggggtgctgc tggggcctgt ctgcttcatg ggataggacc
     4801 gtctctgtct gatcctgtcc attcggaacc aggcccacct ggaatcccac aacatcagct
     4861 ctgtgccacc tcccaagagg gctcctcact atctagggag ccctgggcca gggcgtggag
     4921 agccctcagt cggggcaggc caggggaggg gtgaagtggt tgcctggaca ccccacggga
     4981 ggagtggcat ctggggctct tggccctccc acctggagcc tgttacccgt tagagagctg
     5041 agacccttat ttaaaactca cctcccaatc accccaaaca aatggaagag aagagaaagg
     5101 acatggcgta ttttgtattt aaaagtaatt gtattaatta tttaaagtgt ggaaagcaaa
     5161 ataacaaaaa agagaaacgc caacaaaaat cagcagatgt tgaagacagg ggtctcgggg
     5221 gtgggctccg gcacccacat cctggagtca ggactttcct cagtgactgt gtgtaggggg
     5281 gtttcagggc tgaaccccac ctccctccca ccttcctccc acctcacctg tcgcacccac
     5341 tgtgaaagtt ggaatatgtg gtctccctgg cctcagggct ctgactctgc cagggtgggg
     5401 ctctctaacc cacaggtgtt ggctgcctgg cccatgtgcc cactgtctct tccacttggt
     5461 ctgggtttgg caggcactgc ctgctacttg agggccagga tgctccccca gggaagaaac
     5521 ggaatagtgt ggggtgtgtg cagggctgca tcccgcagat ggctggaata ttaaaattct
     5581 tctatattgg ctggtaaatt gccatggccc tgagccactg agtatgttca ttgccacccc
     5641 tgtccctccc ctgggcaccc ctcactttcc ctgatcctgc aattaaaggg ttaatgtgtg
     5701 gcatatggaa gggactccca ggaccctgtg cccagcttcc atgctgactg atggttaaat
     5761 aatgtgattg tctcctccca
//
