LOCUS       XM_011542873            2966 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens contactin 5 (CNTN5), transcript variant X4,
            mRNA.
ACCESSION   XM_011542873
VERSION     XM_011542873.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000011.10) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_011542873.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
     gene            1..2966
                     /gene="CNTN5"
                     /gene_synonym="HNB-2s; NB-2"
                     /note="contactin 5; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 28 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 17 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:53942"
                     /db_xref="HGNC:HGNC:2175"
                     /db_xref="MIM:607219"
     CDS             532..2475
                     /gene="CNTN5"
                     /gene_synonym="HNB-2s; NB-2"
                     /codon_start=1
                     /product="contactin-5 isoform X3"
                     /protein_id="XP_011541175.1"
                     /db_xref="GeneID:53942"
                     /db_xref="HGNC:HGNC:2175"
                     /db_xref="MIM:607219"
                     /translation="MASSWKLMLFLSVTMCLSEYSKSLPGLSTSYAALLRIKKSSSSS
                     LFGSKTRPRYSSPSLGTLSASSPSWLGAAQNYYSPINLYHSSDAFKQDESVDYGPVFV
                     QEPDDIIFPTDSDEKKVALNCEVRGNPVPSYRWLRNGTEIDLESDYRYSLIDGTFIIS
                     NPSEAKDSGHYQCLATNTVGSILSREATLQFAYLGNFSGRTRSAVSVREGQGVVLMCS
                     PPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSYICLVKNTVT
                     NARVLSPPTPLTLRNDGVMGEYEPKIEVHFPFTVTAAKGTTVKMECFALGNPVPTITW
                     MKVNGYIPSKARLRKSQAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHW
                     VEKLNDTQLDSGSPLRWECKATGKPRPTYRWLKNGVPLSPQSRVEMVNGVLMIHNVNQ
                     SDAGMYQCLAENKYGAIYASAELKILASAPTFALNQLKKTIIVTKDQEVVIECKPQGS
                     PKPTISWKKGDRAVRENKRIAILPDGSLRILNASKSDEGKYVCRGENVFGSAEIIASL
                     SVKEPTRIELTPKRTELTVGESIVLNCKAIHDASLDVTFYWTLKGQPIDFEEEGGHFE
                     SIRAVLFHWIPVTTLLVSQVIYK"
     polyA_site      2966
                     /gene="CNTN5"
                     /gene_synonym="HNB-2s; NB-2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 acaccagccg caggaggcgc cgcacctact tcccaatata accaactacg gcgtggggga
       61 gcggaactgc gagaaggcgg cagccaaagt gccattaaag ctcggggcgg agaggatgcg
      121 ttacctgggt cccgtctgct gcgagaggca gggcaagctg gaggattccc tctgaatgat
      181 taagaactcc gcaattcgcc tctgccacag gctgcaaagg acccgaggaa ccgctctctc
      241 tgaactgtgc tgatgggcag gaggatggga gacaggaatt gagagtcaca gaggaaggac
      301 agtggagtct ggcatcttat tggtgtcttt aaaggattgc catttaatgc cattcaagat
      361 ctactaagca tcatttttgc atgactactg caaaaggatt actttacaga taccagttcc
      421 tttgtcaaga gcatactttg gaccctgttt tcagaaagca gggcactctt taatgaagaa
      481 acaccagagc tgttaaacac attgagacac agaagattct agtgactgag gatggcttcc
      541 tcttggaaac taatgctgtt tctgtcagtc accatgtgtc tttcagagta ttcaaaatct
      601 cttcctggtc tctccacttc atatgctgct ttgttaagaa ttaagaagag ttcatcttca
      661 tctctctttg gttccaaaac cagaccacga tacagcagcc cttcattagg aacactgagt
      721 gcttcttcac ccagctggct aggggcagct cagaattatt attcccccat caatctttat
      781 cattcctcag atgccttcaa acaagatgaa agtgtggact atgggccagt ttttgtgcaa
      841 gaaccagatg atattatttt tccaactgat tctgatgaaa agaaggtagc attgaattgt
      901 gaagttcgtg gcaatccagt tcccagttac agatggcttc gaaatggaac agaaatagat
      961 ctggaaagtg attatcgcta cagtttgata gatggcacct tcattataag caatccaagt
     1021 gaagcaaagg attctggtca ttatcagtgt ttagcaacca acactgtggg gagtattctt
     1081 agtagagaag ctacactgca gtttgcctat ctgggaaatt ttagtggccg gacaagaagt
     1141 gcagtctctg tgagggaagg ccagggtgtc gttctgatgt gctctcctcc gccacattca
     1201 ccagagatca tctatagctg ggtatttaat gagttccctt cctttgtggc ggaagacagc
     1261 cggcggttca tctcccagga gacaggcaac ctttatattt ctaaagtcca aacatcagat
     1321 gttggcagct atatttgtct ggtgaaaaac acagtgacga atgctagagt ccttagtcct
     1381 ccaacgccac tcactctgcg taatgatggt gtgatgggag aatatgagcc gaaaattgag
     1441 gtccattttc ctttcacggt tacagctgct aaaggaacaa ctgttaagat ggaatgcttt
     1501 gcacttggca accccgttcc aacaatcaca tggatgaagg ttaatggtta tattcctagt
     1561 aaggcacgtc tgcggaaatc tcaggcggtg ctggaaatac cgaatgtaca gctggatgat
     1621 gcaggcattt atgagtgcag agctgaaaac tcacgtggaa aaaattcctt tcgtggacaa
     1681 ttacaagtat acacctaccc acactgggta gaaaaactga atgatactca gttagacagt
     1741 gggagccctc tccgatggga atgtaaggct actggaaaac ccagacccac gtatcgttgg
     1801 ctgaagaatg gagtacccct ctcacctcag agtagggttg agatggttaa tggagtattg
     1861 atgatccaca atgtgaatca atcagatgct ggaatgtatc agtgtttggc tgaaaataag
     1921 tatggagcca tttacgctag tgctgagctg aagattctag cttcagctcc cacttttgca
     1981 ctgaatcaac tgaagaaaac aataattgtt accaaagacc aagaagttgt catagagtgc
     2041 aaaccccaag gctctccaaa accaaccatc tcttggaaga aaggagacag agcagttaga
     2101 gaaaacaaaa gaatagctat tcttccagac gggagtctac ggatcctaaa tgcttccaaa
     2161 tcagacgagg gaaagtacgt ttgccgaggg gaaaacgtct ttggttctgc tgaaattata
     2221 gcttcgctat ctgtaaaaga acctacaagg atagaactta ctcctaaaag aacagaattg
     2281 acagtgggag aaagcattgt ccttaattgc aaagcaattc acgatgctag tttggatgtc
     2341 actttctact ggactctgaa aggacagcct attgatttcg aggaagaggg tggacatttt
     2401 gaaagcatca gggccgtatt atttcattgg attcctgtaa ctacactgtt agtcagccaa
     2461 gttatatata aatgagaaca ctgagcccca ggaaggaaga caagtaaagg tcctccctaa
     2521 tgaagacctg agcaacacag gcccatttac gcaacagccc ccatcatcac ttgggcttcc
     2581 ttgaacttaa aacttcattg ccatgaacga tgttccaaat ctgatttgct gttgtaaagc
     2641 acagagagaa ctaaaactag ctgtaactct tcattgtgtc ttttaacact gagatgataa
     2701 aaaagatggt gttattctct gaagtcttac ctctttagct gggtaactac atctgttact
     2761 actatactta cttgatcact attaaaacat taaaattaaa attatgttca gtaagataaa
     2821 atcatcaaat tgtttaaaat tctcccataa aagttactga gaattatttg aaaaacatct
     2881 taaaatatcc tactacactt gcctcttcag atgttctgtg ggtgtgtttt cccattaatt
     2941 aaagctcatt cttctggctg ctgcaa
//
