LOCUS       XM_005268651            5631 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens contactin 1 (CNTN1), transcript variant X3,
            mRNA.
ACCESSION   XM_005268651
VERSION     XM_005268651.3
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000012.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_005268651.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5631
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="12"
     gene            1..5631
                     /gene="CNTN1"
                     /gene_synonym="CMYO12; CMYP12; F3; GP135; MYPCN"
                     /note="contactin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 40 ESTs, 2008
                     long SRA reads, 10 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     34 samples with support for all annotated introns"
                     /db_xref="GeneID:1272"
                     /db_xref="HGNC:HGNC:2171"
                     /db_xref="MIM:600016"
     CDS             195..3251
                     /gene="CNTN1"
                     /gene_synonym="CMYO12; CMYP12; F3; GP135; MYPCN"
                     /codon_start=1
                     /product="contactin-1 isoform X1"
                     /protein_id="XP_005268708.1"
                     /db_xref="GeneID:1272"
                     /db_xref="HGNC:HGNC:2171"
                     /db_xref="MIM:600016"
                     /translation="MKMWLLVSHLVIISITTCLAEFTWYRRYGHGVSEEDKGFGPIFE
                     EQPINTIYPEESLEGKVSLNCRARASPFPVYKWRMNNGDVDLTSDRYSMVGGNLVINN
                     PDKQKDAGIYYCLASNNYGMVRSTEATLSFGYLDPFPPEERPEVRVKEGKGMVLLCDP
                     PYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI
                     TKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR
                     KVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQAFPEWV
                     EHINDTEVDIGSDLYWPCVATGKPIPTIRWLKNGYAYHKGELRLYDVTFENAGMYQCI
                     AENTYGAIYANAELKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSK
                     GTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITDPTRII
                     LAPINADITVGENATMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNFMLDSNG
                     ELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGGLRIEDIRATSVALTW
                     SRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPIIEGNMEAARAVDLIPWMEYEFRVV
                     ATNTLGRGEPSIPSNRIKTDGAAPNVAPSDVGGGGGRNRELTITWAPLSREYHYGNNF
                     GYIVAFKPFDGEEWKKVTVTNPDTGRYVHKDETMSPSTAFQVKVKAFNNKGDGPYSLV
                     AVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANR
                     VQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKAPPSQPPRIISS
                     VRSGSRYIITWDHVVALSNESTVTGYKVLYRPDGQHDGKLYSTHKHSIEVPIPRDGEY
                     VVEVRAHSDGGDGVVSQVKISGAPTLSPSLLGLLLPAFGILVYLEF"
ORIGIN      
        1 aacttgcttt ctgctgcagg agagaggcgt attgtggtat aactgttgct gtatttattc
       61 aaatggacaa tttgcaatag atattatacc caggacgaca gataagtcaa cacataaggt
      121 gtttaaaatt atccaactgc catagagcta aattcttttt tggaaaattg aaccgaactt
      181 ctactgaata caagatgaaa atgtggttgc tggtcagtca tcttgtgata atatctatta
      241 ctacctgttt agcagagttt acatggtata gaagatatgg tcatggagtt tctgaggaag
      301 acaaaggatt tggaccaatt tttgaagagc agccaatcaa taccatttat ccagaggaat
      361 cactggaagg aaaagtctca ctcaactgta gggcacgagc cagccctttc ccggtttaca
      421 aatggagaat gaataatggg gacgttgatc tcacaagtga tcgatacagt atggtaggag
      481 gaaaccttgt tatcaacaac cctgacaaac agaaagatgc tggaatatac tactgtttag
      541 catctaataa ctacgggatg gtcagaagca ctgaagcaac cctgagcttt ggatatcttg
      601 atcctttccc acctgaggaa cgtcctgagg tcagagtaaa agaagggaaa ggaatggtgc
      661 ttctctgtga ccccccatac cattttccag atgatcttag ctatcgctgg cttctaaatg
      721 aatttcctgt atttatcaca atggataaac ggcgatttgt gtctcagaca aatggcaatc
      781 tctacattgc aaatgttgag gcttccgaca aaggcaatta ttcctgcttt gtttccagtc
      841 cttctattac aaagagcgtg ttcagcaaat tcatcccact cattccaata cctgaacgaa
      901 caacaaaacc atatcctgct gatattgtag ttcagttcaa ggatgtatat gcattgatgg
      961 gccaaaatgt gaccttagaa tgttttgcac ttggaaatcc tgttccggat atccgatggc
     1021 ggaaggttct agaaccaatg ccaagcactg ctgagattag cacctctggg gctgttctta
     1081 agatcttcaa tattcagcta gaagatgaag gcatctatga atgtgaggct gagaacatta
     1141 gaggaaagga taaacatcaa gcaagaattt atgttcaagc attccctgag tgggtagaac
     1201 acatcaatga cacagaggtg gacataggca gtgatctcta ctggccttgt gtggccacag
     1261 gaaagcccat ccctacaatc cgatggttga aaaatggata tgcgtatcat aaaggggaat
     1321 taagactgta tgatgtgact tttgaaaatg ccggaatgta tcagtgcata gctgaaaaca
     1381 catatggagc catttatgca aatgctgagt tgaagatctt ggcgttggct ccaacttttg
     1441 aaatgaatcc tatgaagaaa aagatcctgg ctgctaaagg tggaagggtg ataattgaat
     1501 gcaaacctaa agctgcaccg aaaccaaagt tttcatggag taaagggaca gagtggcttg
     1561 tcaatagcag cagaatactc atttgggaag atggtagctt ggaaatcaac aacattacaa
     1621 ggaatgatgg aggtatctat acatgctttg cagaaaataa cagagggaaa gctaatagca
     1681 ctggaaccct tgttatcaca gatcctacgc gaattatatt ggccccaatt aatgccgata
     1741 tcacagttgg agaaaacgcc accatgcagt gtgctgcgtc ctttgatcct gccttggatc
     1801 tcacatttgt ttggtccttc aatggctatg tgatcgattt taacaaagag aatattcact
     1861 accagaggaa ttttatgctg gattccaatg gggaattact aatccgaaat gcgcagctga
     1921 aacatgctgg aagatacaca tgcactgccc agacaattgt ggacaattct tcagcttcag
     1981 ctgaccttgt agtgagaggc cctccaggcc ctccaggtgg tctgagaata gaagacatta
     2041 gagccacttc tgtggcactt acttggagcc gtggttcaga caatcatagt cctatttcta
     2101 aatacactat ccagaccaag actattcttt cagatgactg gaaagatgca aagacagatc
     2161 ccccaattat tgaaggaaat atggaggcag caagagcagt ggacttaatc ccatggatgg
     2221 agtatgaatt ccgcgtggta gcaaccaata cactgggtag aggagagccc agtataccat
     2281 ctaacagaat taaaacagac ggtgctgcac caaatgtggc tccttcagat gtaggaggtg
     2341 gaggtggaag aaacagagag ctgaccataa catgggcgcc tttgtcaaga gaataccact
     2401 atggcaacaa ttttggttac atagtggcat ttaagccatt tgatggagaa gaatggaaaa
     2461 aagtcacagt tactaatcct gatactggcc gatatgtcca taaagatgaa accatgagcc
     2521 cttccactgc atttcaagtt aaagtcaagg ccttcaacaa caaaggagat ggaccttaca
     2581 gcctagtagc agtcattaat tcagcacaag acgctcccag tgaagcccca acagaagtag
     2641 gtgtaaaagt cttatcatct tctgagatat ctgttcattg ggaacatgtt ttagaaaaaa
     2701 tagtggaaag ctatcagatt cggtattggg ctgcccatga caaagaagaa gctgcaaaca
     2761 gagttcaagt caccagccaa gagtactcgg ccaggctcga gaaccttctg ccagacaccc
     2821 agtattttat agaagtcggg gcctgcaata gtgcagggtg tggacctcca agtgacatga
     2881 ttgaggcttt caccaagaaa gcacctccta gccagcctcc aaggatcatc agttcagtaa
     2941 ggtctggttc acgctatata atcacctggg atcatgtcgt tgcactatca aatgaatcta
     3001 cagtgacggg atataaggta ctctacagac ctgatggcca gcatgatggc aagctgtatt
     3061 caactcacaa acactccata gaagtcccaa tccccagaga tggagaatac gttgtggagg
     3121 ttcgcgcgca cagtgatgga ggagatggag tggtgtctca agtcaaaatt tcaggtgcac
     3181 ccaccctatc cccaagtctt ctcggcttac tgctgcctgc ctttggcatc cttgtctact
     3241 tggaattctg aatgtgttgt gacagctgct gttcccatcc cagctcagaa gacacccttc
     3301 aaccctggga tgaccacaat tccttccaat ttctgcggct ccatcctaag ccaaataaat
     3361 tatactttaa caaactattc aactgattta caacacacat gatgactgag gcattcggga
     3421 accccttcat ccaaaagaat aaacttttaa atggatataa atgattttta actcgttcca
     3481 atatgcctta taaaccactt aacctgattc tgtgacagtt gcatgattta acccaatggg
     3541 acaagttaca gtgttcaatt caatactata ggctgtagag tgaaagtcaa atcaccatat
     3601 acaggtgctt taaatttaat aacaagttgt gaaatataat agagattgaa atgttggttg
     3661 tatgtggtaa atgtaagagt aatacagtct cttgtacttt cctcactgtt ttgggtactg
     3721 catattattg aatggcccct atcattcatg acatcttgag ttttcttgaa aagacaatag
     3781 agtgtaacaa atattttgtc agaaatccca ttatcaaatc atgagttgaa agattttgac
     3841 tattgaaaac caaattctag aacttactat cagtattctt attttcaaag gaaataattt
     3901 tctaaatatt tgattttcag aatcagtttt ttaatagtaa agttaacata ccatatagat
     3961 ttttttttac ttttatattc tactctgaag ttattttatg cttttcttat caatttcaaa
     4021 tctcaaaaat cacagctctt atctagagta tcataatatt gctatatttg ttcatatgtg
     4081 gagtgacaaa ttttgaaaag tagagtgctt ccttttttat tgagatgtga cagtctttac
     4141 atggttagga ataagtgaca gttaagtgaa tatcacaatt actagtatgt tggtttttct
     4201 gcttcattcc taagtattac gtttctttat tgcagatgtc agatcaaaaa gtcacctgta
     4261 ggttgaaaaa gctaccgtat tccattttgt aaaaataaca ataataataa taataataat
     4321 tagttttaag ctcatttccc acttcaatgc aatactgaaa actggctaaa aataccaaat
     4381 caatatactg ctaatggtac tttgaagagt atgcaaaact ggaaggccag gaggaggcaa
     4441 ataatatgtc tttccgatgg tgtctcccaa gtgttggtgc tttgggtttt tataagttgt
     4501 gaaaaggaag atgcacattt cttcattctc catggtgtgc atggaaatgt gtttgagtgt
     4561 ggatgtaaaa gaaatcgagt aataaagaat tagctggctt gtgaaatagt gcagtgttgg
     4621 atgcttcaag aggtataatc ctattttatt agcacaaact tgctagctaa ttagagttta
     4681 tctttttaga aaggacaccg tataggttcg taaaaaatat ttacaggaag caaaatagat
     4741 ctattactac tttaccgact ttaccccctt tctttaattt gtataatttt tgtactatat
     4801 atcgatgtgt aaatgtttag agtcttcatt atgaaaatat caataaatat ttcattagtt
     4861 tacatttaac tctggtataa aatgaaactt ttaaaaataa gtgaaatgga tgatttccca
     4921 gtggaagtat gtcaacagtc ttaagatcat tgccagattt cataaaatat ttaagtattt
     4981 gaaaaagaaa caaaatgtct tcatacttta gggaaacgaa taccctgtat accttctgta
     5041 caaatgtttg tgttttcatt gttacacttt ggggttttac ttttgcaatg tgacccatgt
     5101 tgggcatttt tatataatca acaactaaat cttttgccaa atgcatgctt gccttttatt
     5161 ttctaatata tgataataac gagcaaaact ggttagattt tgcatgaaat ggttctgaaa
     5221 ggtaagagga aaacagactt tggaggttgt ttagttttga atttctgaca gagataaagt
     5281 agtttaaaat ctctcgtaca ctgataactc aagcttttca ttttctcata cagttgtaca
     5341 gatttaactg ggaccatcag ttttaaactg ttgtcaagct aactaataat catctgcttt
     5401 aagacgcaag attctgaatt aaactttata taggtataga tacatctgtt gtttctttgt
     5461 atttcaggaa aggtgatagt agttttattt gatactgata aatattgaat tgatttttta
     5521 gttatttttt atcatttttt caatggagta gtataggact gtgctttgtc ctttttatga
     5581 atgaaaaaat tagtataaag taataaatgt cttatgttac ccaagaaaga a
//
