LOCUS       NM_001395331            1523 bp    mRNA    linear   PRI 17-FEB-2024
DEFINITION  Homo sapiens C-type lectin domain containing 20A (CLEC20A), mRNA.
ACCESSION   NM_001395331
VERSION     NM_001395331.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL035702.7 and KF455100.1.
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            MANE Ensembl match        :: ENST00000623247.3/ ENSP00000490899.1
            RefSeq Select criteria    :: based on manual assertion,
                                         conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 AL035702.7         449-452
            5-65                KF455100.1         1-61
            66-422              AL035702.7         2603-2959
            423-488             AL035702.7         4847-4912
            489-854             AL035702.7         6976-7341
            855-953             AL035702.7         8814-8912
            954-1061            AL035702.7         14131-14238
            1062-1147           AL035702.7         15016-15101
            1148-1523           AL035702.7         17798-18173
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
                     /map="1q25.2"
     gene            1..1523
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /note="C-type lectin domain containing 20A"
                     /db_xref="GeneID:400797"
                     /db_xref="HGNC:HGNC:34521"
     exon            1..65
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..1228
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /note="long intergenic non-protein coding RNA 83; C-type
                     lectin domain family 20 member A; putative C-type lectin
                     domain family 20 member A"
                     /codon_start=1
                     /product="putative C-type lectin domain family 20 member A
                     precursor"
                     /protein_id="NP_001382260.1"
                     /db_xref="CCDS:CCDS91118.1"
                     /db_xref="GeneID:400797"
                     /db_xref="HGNC:HGNC:34521"
                     /translation="MLPRALLLSFCAAALQLVSSKRDLVLVKEALSWYDAQQHCRLHY
                     TDLADLQPSGLWKLYSLMTSTPAWIGLFFDASTSGLRWSSGSTFTALEWGQKLPEFGV
                     GFCATLYTWLKLPSIGAASCTAQKPFLCYCDPDVGHLISTKPSLSLTTSPKPAVVQIS
                     GQTFMRFDQVMTWSSALLYCRSHHTDLADLQMVTDETGKEALRSIMSETEAWIGLYLN
                     ANSGSLSWSSDLGASIPSWLQVPMMVRGLCTALGIYMTYSPKVYSVNCSSLLPFFCFY
                     DSSTGHRASAELPPLFHTSPTEMTEETTPRPGRAVASVGSGTDRRDTAAATEAQHLSS
                     ESKEKTSAQKSGHPFGILKADFTISTLMDPEEMKDQFLRQIQEVLKLTLGHEQFRLKW
                     VSFEVNKK"
     exon            66..422
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /inference="alignment:Splign:2.1.0"
     exon            423..488
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /inference="alignment:Splign:2.1.0"
     exon            489..854
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /inference="alignment:Splign:2.1.0"
     exon            855..953
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /inference="alignment:Splign:2.1.0"
     exon            954..1061
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1147
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1523
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1495..1500
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /note="hexamer: AATAAA"
     polyA_site      1523
                     /gene="CLEC20A"
                     /gene_synonym="LINC00083; NCRNA00083"
                     /note="major polyA site"
ORIGIN      
        1 gccatcgccc agccagtgcc cagccatgct gccccgggcg ctgctgctct ccttctgcgc
       61 agcagccctg cagctggtga gcagtaagag ggacttggtt ctggtgaagg aggcgctgag
      121 ctggtacgac gcccagcagc actgccggct gcactacaca gacctcgctg acctgcagcc
      181 aagtggcctg tggaagctct actccctcat gaccagcacc ccggcttgga ttggcctctt
      241 cttcgacgca agcacttctg gcctgagatg gtccagcggc tccaccttca cagccctgga
      301 gtggggccag aagctacctg aatttggggt gggcttctgt gccacgctgt acacttggct
      361 gaaattaccc agcatagggg ctgcctcctg cacagcccag aagcccttcc tctgctactg
      421 tgaccctgac gtcgggcacc tcatctccac gaagccctct ctcagcctga ccacctctcc
      481 aaagccagct gtggtccaga tcagtggtca gaccttcatg cgatttgacc aagtgatgac
      541 atggtcctcg gccctgctgt actgccgcag ccaccacacg gatctggccg acctgcagat
      601 ggtgacggat gagacaggca aggaggcctt gagatccatc atgagtgaga ctgaagcctg
      661 gattggcctc tacctcaatg caaactccgg atctctgagc tggtccagtg acctgggggc
      721 cagcatcccc tcctggctgc aggtgccgat gatggtgaga ggactgtgca cagctcttgg
      781 catctatatg acctactccc caaaagtgta ctcagtgaac tgctcttccc tgctgccctt
      841 cttctgcttc tatgactcct ccactggaca ccgggcatca gcagagttgc ctccactctt
      901 ccacacttcc cccacagaaa tgacagagga aacaactccc aggccaggca gagctgtggc
      961 cagtgtaggg agtggcactg atagaagaga tacagctgct gccacggagg cccaacatct
     1021 gagttcagaa tctaaagaaa aaacatcagc acaaaaatca gggcaccctt ttggaatctt
     1081 gaaagcagac tttaccatct caactctgat ggacccagaa gagatgaaag accaatttct
     1141 gagacagatc caggaagtct taaagcttac attaggtcac gaacaattta gactgaaatg
     1201 ggtcagcttc gaagtgaaca aaaaatagca caattcttgg atatgcagtt tctgtttcat
     1261 gcaatcttct ctggattttg agtaaatttt aattttttaa tccctagtag aacaagatta
     1321 ggaagaactc gacatgtgcc aaaaagcaca gacctacaac taacacaaaa caagactaca
     1381 catgaaacct gcatccctgg attttacaga atgaaacagg gatgcaggag aagatgggtg
     1441 tatttgggaa caatcatgtt gggaatgaca aatgaacttc tattaagaaa ttaaaataaa
     1501 aaacctgaac caaacatcaa aaa
//
