LOCUS       NM_001396020            2996 bp    mRNA    linear   PRI 02-APR-2024
DEFINITION  Homo sapiens CHD9 neighbor (CHD9NB), transcript variant 1, mRNA.
ACCESSION   NM_001396020
VERSION     NM_001396020.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2996)
  AUTHORS   Li,N. and Richard,S.
  TITLE     Sam68 functions as a transcriptional coactivator of the p53 tumor
            suppressor
  JOURNAL   Nucleic Acids Res 44 (18), 8726-8741 (2016)
   PUBMED   27365047
REFERENCE   2  (bases 1 to 2996)
  AUTHORS   Sanchez,Y., Segura,V., Marin-Bejar,O., Athie,A., Marchese,F.P.,
            Gonzalez,J., Bujanda,L., Guo,S., Matheu,A. and Huarte,M.
  TITLE     Genome-wide analysis of the human p53 transcriptional network
            unveils a lncRNA tumour suppressor signature
  JOURNAL   Nat Commun 5, 5812 (2014)
   PUBMED   25524025
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC007906.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189658.180592.1,
                                           SRR5189667.192282.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968540, SAMEA2145313
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000619363.3/ ENSP00000490424.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               AC007906.8         168518-168654
            138-216             AC007906.8         174132-174210
            217-2996            AC007906.8         177152-179931
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
                     /map="16q12.2"
     gene            1..2996
                     /gene="CHD9NB"
                     /gene_synonym="PR-lncRNA-1"
                     /note="CHD9 neighbor"
                     /db_xref="GeneID:105371267"
                     /db_xref="HGNC:HGNC:53436"
     exon            1..137
                     /gene="CHD9NB"
                     /gene_synonym="PR-lncRNA-1"
                     /inference="alignment:Splign:2.1.0"
     exon            138..216
                     /gene="CHD9NB"
                     /gene_synonym="PR-lncRNA-1"
                     /inference="alignment:Splign:2.1.0"
     exon            217..2996
                     /gene="CHD9NB"
                     /gene_synonym="PR-lncRNA-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             322..480
                     /gene="CHD9NB"
                     /gene_synonym="PR-lncRNA-1"
                     /note="p53-regulated lncRNA 1"
                     /codon_start=1
                     /product="CHD9 neighbor protein"
                     /protein_id="NP_001382949.1"
                     /db_xref="CCDS:CCDS92160.1"
                     /db_xref="GeneID:105371267"
                     /db_xref="HGNC:HGNC:53436"
                     /translation="MGCHSSKSTTVAAESQKLEEEREGREPGLETGTQAADCKDAPLK
                     DGTPEPKS"
     polyA_site      1284
                     /gene="CHD9NB"
                     /gene_synonym="PR-lncRNA-1"
                     /note="major polyA site"
     regulatory      2974..2979
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CHD9NB"
                     /gene_synonym="PR-lncRNA-1"
                     /note="hexamer: AATAAA"
     polyA_site      2996
                     /gene="CHD9NB"
                     /gene_synonym="PR-lncRNA-1"
                     /note="major polyA site"
ORIGIN      
        1 ggaggtgtca tctgtggaca atacctggaa gggcaagggg tggtgggtgt cactaaaagg
       61 aaccagcccc agctacttca ctgcaggctg gtgccctggt gaaggtgaat cagtcagagg
      121 agtgctgact gcccatgggg ctgcaccata tcatggttcc cactagcaat atatgagagt
      181 tccagttgct ccacaacctc gccaacatat gacaggtgct gcaagaggat ggttatttaa
      241 cgctggcccc caaggaggaa ggcacagacc ttcctcctcc tggaacatcc aagggcactg
      301 gatcctctgt gtccctctga gatggggtgc cactccagca agagcaccac ggtggcagct
      361 gagtcccaga agcttgaaga agagcgcgag ggaagagagc caggtctgga gaccggcacc
      421 caggcagcag actgcaagga tgccccgctg aaggatggaa cccctgagcc aaagagctga
      481 aatgcctctc tccagagtcg gaccctcacc tccttcctgg aactgccttt ggccccagaa
      541 ccatgagaca atccccaccc tgagaagctc cgatcactgg gaggagagag aaagcctcca
      601 gctttgggat tcaggcttca gaagttttta gcagcctttg ctcattggag aggtggggag
      661 gataagtcta taaggaatcc tatttcccca gctctcccac agagaggaca aaagaagtct
      721 tcacacgttg tggaactttc ctgcaacttc tggatgcaga caagcctcag agcagactgt
      781 tctggctcca gtgaatatcg gctgccaagc tgtgagcatc cagggatccc cgtctgcctg
      841 gctttcctga agtcagaagg cgccttggtc atactgtgtg gggtgtgtgg atctcagttt
      901 gctctctttc tttctccttt tttcaacagc tggcggagta gccaacaccc ctgacagcaa
      961 tgtgttgcac ttggctcact ccacacccta tgaataattt taatatttaa cttgaaatgt
     1021 tgttaagaaa ctatggaaaa tatcaggatc ccactgggat cccgtaaatt gaaggcaaca
     1081 aggtcttggt cctccagtaa ggggggcatg gagccctggt gggaaggaaa gaagagaaat
     1141 ttgtgttcct gattccttaa tccccaagaa aggtccctct gctaacattc acatatctct
     1201 tcctagccaa agtctgtcca tttcaaccct ctagcatctg agctatctgc atccagcttt
     1261 caaaaatatt tcgctgttta ctaacatgtc tgtcagcctc tcttttctcc cccgcatgtg
     1321 ttttgttttt aaatccactc aaaagcgttt tcatttgaaa tcaaatagac atgtttgcaa
     1381 ataaatgttg acacaacaca tttgaaagac agaattgggg atctgagatt aagagtatca
     1441 gcagagaaga gtgggtgtaa ttctgtggaa caggagtgag aacagaggcg agggagccgt
     1501 tgctttgtgc caggcgccat gctgaggact ttccatagac ggtttaatgc cacccaacta
     1561 ctcccatttt atagatgagg aaatggagga aataaagtca cttgcctgag tttgggcagc
     1621 caggaaggag cagaacccac agttgagccc cagcagtttg gcttgggaaa cgcatgtaga
     1681 gtgcttctta aagcagagag cctttctcat gattaaactg aaatactagt ccctttatag
     1741 cctgtgcata gtgaggacca tttttcttta ttcactgaga cctacctgcc tattgagaag
     1801 tatgtaaccg gtcagcttgg agttgcccca ctgcaggttg ggtgatgcat tgagggactt
     1861 tttattttta ctctggtggt gggggacggg gagggaggaa gagacggaga gggaagtggg
     1921 agaagggagg gagggaaggg aggaaagatg aagaaaggga ggagggagag gaggggggaa
     1981 gggagagaaa gaggaaagag gtagggagag ggagaagagg agggaggaga gagggcaaga
     2041 agaaaaagga ggaggggaaa cagaggaaga gagggaggag ggaaagaagg agagggagag
     2101 aaagggaaga ggtagggaga tgaaagagcg gggagaggca gaatgggaga gggagagaag
     2161 gagaggggag acggagggag gaagggagag aaaggagagg ggtgagggaa aaggggtagg
     2221 gaggagggag gaagagaaaa atggggagag ggtgggcgag aaggaaagga agaaatcgag
     2281 gaagttggag gaatgaggga tgaggcaggg agggagaaag ggagggcgaa gcagtaaggt
     2341 gctgcaaagg acccttcttt ttggccataa aaacctgaga aactgattga gattcttttg
     2401 agcaataagg caactgcggt gaggaaaaaa taaggaagga ggcacaaaaa gcaaagcagt
     2461 tcagcctgaa attgactaca gagcttccct ttgcttcagc agagcctgga ggagcaggag
     2521 ggatgggggc cctgtcagct ggcccaaagc cctgccctgt cccaggggtg ctaagcttgc
     2581 tgcaggccag gaaacaggcc tgggcttgca gctggggatc aggaagtttg gggcctcttt
     2641 gcacagctta ctggggatag gccaagctct gggaactcct ttcaattttt ttttttttta
     2701 agacaactct gtttttctcc ctcctcccta ctagtggaaa tttaccttgc aaaacaggac
     2761 tgtgcatggt gagagctgct tgcaatgtcc acactcagga ctctatggaa agagttcgca
     2821 gctggtggtg aggctttgag gtggggctgc ccttatttca ctagctcctg aggggcagag
     2881 ctcactcagc tttttaccaa atcaaaggaa ggaagcttta ggtccttcga agttcagaac
     2941 cagggtggtt tgttttgctt ccttttggaa tggaataaaa tgctcattta attaaa
//
