LOCUS       NM_001308319           11547 bp    mRNA    linear   PRI 02-APR-2024
DEFINITION  Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9),
            transcript variant 1, mRNA.
ACCESSION   NM_001308319 XM_011523348
VERSION     NM_001308319.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 11547)
  AUTHORS   Alendar,A., Lambooij,J.P., Bhaskaran,R., Lancini,C., Song,J.Y., van
            Vugt,H., Snoek,M. and Berns,A.
  TITLE     Gene expression regulation by the Chromodomain helicase DNA-binding
            protein 9 (CHD9) chromatin remodeler is dispensable for murine
            development
  JOURNAL   PLoS One 15 (5), e0233394 (2020)
   PUBMED   32453735
  REMARK    GeneRIF: Gene expression regulation by the Chromodomain helicase
            DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for
            murine development.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11547)
  AUTHORS   Sabater-Lleal,M., Huang,J., Chasman,D., Naitza,S., Dehghan,A.,
            Johnson,A.D., Teumer,A., Reiner,A.P., Folkersen,L., Basu,S.,
            Rudnicka,A.R., Trompet,S., Malarstig,A., Baumert,J., Bis,J.C.,
            Guo,X., Hottenga,J.J., Shin,S.Y., Lopez,L.M., Lahti,J., Tanaka,T.,
            Yanek,L.R., Oudot-Mellakh,T., Wilson,J.F., Navarro,P.,
            Huffman,J.E., Zemunik,T., Redline,S., Mehra,R., Pulanic,D.,
            Rudan,I., Wright,A.F., Kolcic,I., Polasek,O., Wild,S.H.,
            Campbell,H., Curb,J.D., Wallace,R., Liu,S., Eaton,C.B.,
            Becker,D.M., Becker,L.C., Bandinelli,S., Raikkonen,K., Widen,E.,
            Palotie,A., Fornage,M., Green,D., Gross,M., Davies,G., Harris,S.E.,
            Liewald,D.C., Starr,J.M., Williams,F.M., Grant,P.J., Spector,T.D.,
            Strawbridge,R.J., Silveira,A., Sennblad,B., Rivadeneira,F.,
            Uitterlinden,A.G., Franco,O.H., Hofman,A., van Dongen,J.,
            Willemsen,G., Boomsma,D.I., Yao,J., Swords Jenny,N.,
            Haritunians,T., McKnight,B., Lumley,T., Taylor,K.D., Rotter,J.I.,
            Psaty,B.M., Peters,A., Gieger,C., Illig,T., Grotevendt,A.,
            Homuth,G., Volzke,H., Kocher,T., Goel,A., Franzosi,M.G.,
            Seedorf,U., Clarke,R., Steri,M., Tarasov,K.V., Sanna,S.,
            Schlessinger,D., Stott,D.J., Sattar,N., Buckley,B.M., Rumley,A.,
            Lowe,G.D., McArdle,W.L., Chen,M.H., Tofler,G.H., Song,J.,
            Boerwinkle,E., Folsom,A.R., Rose,L.M., Franco-Cereceda,A.,
            Teichert,M., Ikram,M.A., Mosley,T.H., Bevan,S., Dichgans,M.,
            Rothwell,P.M., Sudlow,C.L., Hopewell,J.C., Chambers,J.C.,
            Saleheen,D., Kooner,J.S., Danesh,J., Nelson,C.P., Erdmann,J.,
            Reilly,M.P., Kathiresan,S., Schunkert,H., Morange,P.E.,
            Ferrucci,L., Eriksson,J.G., Jacobs,D., Deary,I.J., Soranzo,N.,
            Witteman,J.C., de Geus,E.J., Tracy,R.P., Hayward,C., Koenig,W.,
            Cucca,F., Jukema,J.W., Eriksson,P., Seshadri,S., Markus,H.S.,
            Watkins,H., Samani,N.J., Wallaschofski,H., Smith,N.L., Tregouet,D.,
            Ridker,P.M., Tang,W., Strachan,D.P., Hamsten,A. and O'Donnell,C.J.
  CONSRTM   VTE Consortium; STROKE Consortium; Wellcome Trust Case Control
            Consortium 2 (WTCCC2); C4D Consortium; CARDIoGRAM Consortium
  TITLE     Multiethnic meta-analysis of genome-wide association studies in
            >100 000 subjects identifies 23 fibrinogen-associated Loci but no
            strong evidence of a causal association between circulating
            fibrinogen and cardiovascular disease
  JOURNAL   Circulation 128 (12), 1310-1324 (2013)
   PUBMED   23969696
REFERENCE   3  (bases 1 to 11547)
  AUTHORS   Marom,R., Shur,I., Hager,G.L. and Benayahu,D.
  TITLE     Expression and regulation of CReMM, a chromodomain
            helicase-DNA-binding (CHD), in marrow stroma derived
            osteoprogenitors
  JOURNAL   J Cell Physiol 207 (3), 628-635 (2006)
   PUBMED   16523501
  REMARK    GeneRIF: CReMM is a chromodomain helicase-DNA-binding protein
            expressed by osteoprogenitors
REFERENCE   4  (bases 1 to 11547)
  AUTHORS   Surapureddi,S., Viswakarma,N., Yu,S., Guo,D., Rao,M.S. and
            Reddy,J.K.
  TITLE     PRIC320, a transcription coactivator, isolated from peroxisome
            proliferator-binding protein complex
  JOURNAL   Biochem Biophys Res Commun 343 (2), 535-543 (2006)
   PUBMED   16554032
REFERENCE   5  (bases 1 to 11547)
  AUTHORS   Shur,I., Solomon,R. and Benayahu,D.
  TITLE     Dynamic interactions of chromatin-related mesenchymal modulator, a
            chromodomain helicase-DNA-binding protein, with promoters in
            osteoprogenitors
  JOURNAL   Stem Cells 24 (5), 1288-1293 (2006)
   PUBMED   16705189
  REMARK    GeneRIF: Chromatin immunoprecipitation assay was applied to follow
            the dynamics of CReMM binding to A/T-rich regions on promoters of
            genes that play a role in osteoblast maturation.
REFERENCE   6  (bases 1 to 11547)
  AUTHORS   Shur,I. and Benayahu,D.
  TITLE     Characterization and functional analysis of CReMM, a novel
            chromodomain helicase DNA-binding protein
  JOURNAL   J Mol Biol 352 (3), 646-655 (2005)
   PUBMED   16095617
  REMARK    GeneRIF: The CHD9 (CReMM) protein is extensively phosphorylated,
            has DNA-dependent ATPase activity, and binds to A/T-rich DNA. It is
            also expressed in mesenchymal progenitors.
REFERENCE   7  (bases 1 to 11547)
  AUTHORS   Hu,R.M., Han,Z.G., Song,H.D., Peng,Y.D., Huang,Q.H., Ren,S.X.,
            Gu,Y.J., Huang,C.H., Li,Y.B., Jiang,C.L., Fu,G., Zhang,Q.H.,
            Gu,B.W., Dai,M., Mao,Y.F., Gao,G.F., Rong,R., Ye,M., Zhou,J.,
            Xu,S.H., Gu,J., Shi,J.X., Jin,W.R., Zhang,C.K., Wu,T.M.,
            Huang,G.Y., Chen,Z., Chen,M.D. and Chen,J.L.
  TITLE     Gene expression profiling in the human
            hypothalamus-pituitary-adrenal axis and full-length cDNA cloning
  JOURNAL   Proc Natl Acad Sci U S A 97 (17), 9543-9548 (2000)
   PUBMED   10931946
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC007906.8 and AC079416.4.
            
            On May 1, 2020 this sequence version replaced NM_001308319.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1). Variants 1 and 7
            both encode the same isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14372080.3039062.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1968540
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000447540.6/ ENSP00000396345.2
            RefSeq Select criteria :: based on manual assertion, conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-87                AC007906.8         166338-166424       c
            88-1703             AC007906.8         63874-65489         c
            1704-2035           AC007906.8         11602-11933         c
            2036-2147           AC079416.4         119447-119558       c
            2148-2294           AC079416.4         115690-115836       c
            2295-2363           AC079416.4         114738-114806       c
            2364-2419           AC079416.4         114599-114654       c
            2420-2537           AC079416.4         113102-113219       c
            2538-2624           AC079416.4         110697-110783       c
            2625-2762           AC079416.4         110418-110555       c
            2763-2884           AC079416.4         106896-107017       c
            2885-3128           AC079416.4         103616-103859       c
            3129-3305           AC079416.4         99186-99362         c
            3306-3449           AC079416.4         96723-96866         c
            3450-3705           AC079416.4         96352-96607         c
            3706-3916           AC079416.4         94699-94909         c
            3917-4112           AC079416.4         92136-92331         c
            4113-4280           AC079416.4         87597-87764         c
            4281-4460           AC079416.4         86423-86602         c
            4461-4571           AC079416.4         79105-79215         c
            4572-4768           AC079416.4         74712-74908         c
            4769-4968           AC079416.4         74076-74275         c
            4969-5128           AC079416.4         68417-68576         c
            5129-5218           AC079416.4         67900-67989         c
            5219-5322           AC079416.4         56503-56606         c
            5323-5440           AC079416.4         55859-55976         c
            5441-5498           AC079416.4         54188-54245         c
            5499-5541           AC079416.4         50435-50477         c
            5542-5761           AC079416.4         49150-49369         c
            5762-5964           AC079416.4         45044-45246         c
            5965-6870           AC079416.4         37577-38482         c
            6871-7031           AC079416.4         35805-35965         c
            7032-7304           AC079416.4         34249-34521         c
            7305-7473           AC079416.4         33348-33516         c
            7474-7613           AC079416.4         27686-27825         c
            7614-7835           AC079416.4         27158-27379         c
            7836-7964           AC079416.4         23862-23990         c
            7965-8069           AC079416.4         20572-20676         c
            8070-11547          AC079416.4         14705-18182         c
FEATURES             Location/Qualifiers
     source          1..11547
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
                     /map="16q12.2"
     gene            1..11547
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /note="chromodomain helicase DNA binding protein 9"
                     /db_xref="GeneID:80205"
                     /db_xref="HGNC:HGNC:25701"
                     /db_xref="MIM:616936"
     exon            1..87
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            88..1703
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     CDS             252..8945
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /EC_number="3.6.4.12"
                     /note="isoform 1 is encoded by transcript variant 1;
                     PPAR{gamma}-interacting cofactor 320 kDa;
                     chromatin-related mesenchymal modulator; proteinx0008;
                     chromatin remodeling factor CHROM1; ciprofibrate bound
                     protein p240; kismet homolog 2; ATP-dependent helicase
                     CHD9; PPAR-alpha-interacting complex protein 320 kDa;
                     peroxisomal proliferator-activated receptor A-interacting
                     complex 320 kDa protein"
                     /codon_start=1
                     /product="chromodomain-helicase-DNA-binding protein 9
                     isoform 1"
                     /protein_id="NP_001295248.1"
                     /db_xref="CCDS:CCDS76865.1"
                     /db_xref="GeneID:80205"
                     /db_xref="HGNC:HGNC:25701"
                     /db_xref="MIM:616936"
                     /translation="MTDPMMDFFDDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAE
                     FEPLHIDSLNHVQGTPTHQKMTDFEQLNQFDSIKFHHVNQSFGSPAEHVLSPHSQFNC
                     SPIHPQNQPNGLFPDVSDGSPMWGHQTATTISNQNGSPFHQQGHSHSMHQNKSFVAHH
                     DFALFQANEQQTQCTSLRSQQNRNNLNPGQNSLSQSKNFMNVSGPHRVNVNHPPQMTN
                     ASNSQQSISMQQFSQTSNPSAHFHKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSF
                     SSNHISPNSLLQSSAVLASNHTNQTLSDFTGSNSFSPHRGIKQESTQHILNPNTSLNS
                     NNFQILHSSHPQGNYSNSKLSPVHMNFPDPVDSGTQMGHFNDHVETNGFSSLEENLLH
                     QVESQTEPFTGLDPEDLLQEGLLPHFDESTFGQDNSSHILDHDLDRQFTSHLVTRPSD
                     MAQTQLQSQARSWHSSFSNHQHLHDRNHLCLQRQPPSSKKSDGSGTYTKLQNTQVRVM
                     SEKKQRKKVESESKQEKANRIISEAIAKAKERGERNIPRVMSPENFPTASVEGKEEKK
                     GRRMKSKPKDKDSKKTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQH
                     TLKDQDSQKRRSNRQIKRKKYAEDIEGKQSEEEVKGSMKIKKNSAPLPGEQPLQLFVE
                     NPSEEDAAIVDKILSSRTVKKEISPGVMIDTEEFFVKYKNYSYLHCEWATEEQLLKDK
                     RIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFCEDKDTGEPVIYYLV
                     KWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKN
                     GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRGPFLII
                     APLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAI
                     ITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQ
                     NTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEK
                     KLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNH
                     PYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIF
                     SQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGG
                     LGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRA
                     SLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEED
                     IDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIEA
                     ISGRNSLVIDTPRIRKQTRPFSATKDELAELSEAESEGDEKPKLRRPCDRSNGYGRTE
                     CFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGF
                     IWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQL
                     LQDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHS
                     EVPAEWWDFDADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRAND
                     YMDGDVEDPEYKPAPAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKVYWPTQSALTTR
                     LRRLITAYQRTNKNRQIQQIQPTFSVPTSVMQPIYEEATLNPKMAAKIERQQRWTRRE
                     EADFYRVVSTFGVVFDPDRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRL
                     PSKEELVDPNIFIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLP
                     VWWECGPHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLL
                     QQYQVALSASPLTSLPRLLDAKGIILEEMKVKSENLKEEPQSSEEESMSSVETRTLIK
                     SEPVSPKNGVLPQATGDQKSGGKCETDRRMVAARTEPLTPNPASKKPRVHKRGSESSS
                     DSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSS
                     SSSEESDSDEEEAQKRESTTHMKAYDEESVASLSTTQDETQDSFQMNNGTPESAYILQ
                     GGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRSYDANTVASFYTTKLLDSPGA
                     ATEYSDPSVPTPPGAGVKEEHDQSTQMSKVKKHVREKEFTVKIKDEGGLKLTFQKQGL
                     AQKRPFDGEDGALGQQQYLTRLRELQSASETSLVNFPKSIPVSGTSIQPTLGANGVIL
                     DNQPIVKKRRGRRKNVEGVDIFFFNRNKPPNHVSLGLTSSQISTGINPALSYTQPQGI
                     PDTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYVEDLGAFIPRMQLHEGRPK
                     QKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEYGVA
                     PEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSGIAKATAAAAAASATSVS
                     GNPLLANGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPTGLPSGGEAKNMAAMFP
                     MLLSGMAGLPNLLGMGGLLTKPTESGTEDKKGSDSKESEGKTERTESQSSENGGENSV
                     SSSPSTSSTAALNTAAAANPLALNPLLLSNILYPGMLLTPGLNLHIPTLSQSNTFDVQ
                     NKNSDLGSSKSVEVKEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSS
                     SSEDSDSSNED"
     exon            1704..2035
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            2036..2147
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            2148..2294
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            2295..2363
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            2364..2419
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            2420..2537
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            2538..2624
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            2625..2762
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            2763..2884
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            2885..3128
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            3129..3305
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            3306..3449
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            3450..3705
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            3706..3916
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            3917..4112
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            4113..4280
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            4281..4460
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            4461..4571
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            4572..4768
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            4769..4968
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            4969..5128
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            5129..5218
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            5219..5322
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            5323..5440
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            5441..5498
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            5499..5541
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            5542..5761
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            5762..5964
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            5965..6870
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            6871..7031
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            7032..7304
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            7305..7473
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            7474..7613
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            7614..7835
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            7836..7964
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            7965..8069
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     exon            8070..11547
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /inference="alignment:Splign:2.1.0"
     regulatory      11525..11530
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /note="hexamer: ATTAAA"
     polyA_site      11547
                     /gene="CHD9"
                     /gene_synonym="AD013; CHD-9; CReMM; KISH2; PRIC320"
                     /note="major polyA site"
ORIGIN      
        1 gcttcacagg cgcagcgaca gcgacagcga cagctcgaac ctgagtccca ggattccggg
       61 gactggaggg cagcgccggc agccaaggat tttgacactt catgacatgt cattatttag
      121 agcaataatg aatattgacc tgttttggat tagttgatga ccttcggaaa tgatccaata
      181 atatctacta tagagaagct gaatatactc catttggagt gaacagcccg gattgttaca
      241 gaattttcaa gatgacagat ccaatgatgg acttttttga tgatgccaat ctttttggtg
      301 agaccttaga aggtttgtca gatgatgcat ttgtacaacc aggacctgtt tcactagttg
      361 atgaattgaa tttgggtgca gaatttgaac cgttgcacat agattcactg aaccatgttc
      421 aaggtactcc aacacatcag aagatgactg attttgaaca gttaaatcaa tttgattcaa
      481 taaaatttca ccatgttaat caatcttttg gtagcccagc tgaacatgtg ttatctccac
      541 actctcagtt taattgttct ccaatccatc cccaaaacca acccaatggt ttgtttccag
      601 atgtatcaga tggcagtcca atgtggggcc atcagacagc tactaccatt tcaaatcaaa
      661 atggatctcc ttttcaccaa caaggacatt cacactctat gcatcaaaat aaaagctttg
      721 tggcacacca tgactttgcc ttatttcagg ccaatgaaca acaaacacag tgtacttcac
      781 tacgctcaca acaaaacaga aataatctca acccagggca gaattctctt agccagtcta
      841 aaaattttat gaatgtttct ggtccacata gagtcaatgt taaccaccca ccacagatga
      901 ctaatgcatc taattcacaa cagtctattt caatgcagca attttctcaa acgtcaaatc
      961 cttcagcaca cttccacaag tgtagcagtc atcaagaagg aaattttaat ggaccttccc
     1021 caaatatgac ttcttgttct gtcagtaatt cacagcaatt ttcttcacat tattcctttt
     1081 ccagtaatca tatatcacca aacagtctac ttcagtcctc tgcagttctt gcatctaatc
     1141 atacaaatca gactttatct gattttactg gaagtaattc cttttcacct catagaggaa
     1201 tcaagcaaga atctactcag catatcctaa accccaatac atcattgaat tcaaataatt
     1261 tccaaatatt gcattcatca catcctcagg gtaattatag caattcaaaa ttatctcctg
     1321 tgcacatgaa cttcccagat cctgttgact caggaactca aatgggccat ttcaatgatc
     1381 atgtagaaac taatggcttt tcatctttag aagagaattt acttcatcaa gtggaatctc
     1441 aaactgagcc attcacagga cttgaccccg aggacctcct tcaggagggt cttcttcctc
     1501 actttgatga gtcaacattc ggacaagata attcaagtca cattttagat catgaccttg
     1561 atcggcagtt tacttcgcat ctggtaacac ggccttctga tatggctcag actcagttgc
     1621 aaagtcaggc tcggagttgg cattcatcat tttctaatca tcagcattta catgacagaa
     1681 atcacctatg tttacagcga cagcctccat cttccaagaa gagcgatggt tctgggacat
     1741 atactaagtt gcagaatacc caggtgaggg tcatgtctga gaagaagcag agaaaaaagg
     1801 tggaatcaga aagcaagcaa gaaaaggcta atcgtataat atcagaggcc atagcaaaag
     1861 caaaggagcg tggggaacgc aatattccac gagtaatgag ccctgaaaac tttcctactg
     1921 cttcagttga aggaaaagag gaaaagaaag gtagaaggat gaaatccaag ccaaaggaca
     1981 aagacagcaa aaaaacaaaa acatgttcta agttaaaaga gaagacaaaa attggcaaac
     2041 tcattattac attgggtaag aaacaaaaaa gaaagaatga gtcttcagat gaaatatctg
     2101 atgcagaaca gatgccacag catacattaa aagatcaaga ctctcaaaaa agaagatcaa
     2161 atcgacaaat taaaagaaaa aaatacgcag aagatataga agggaagcaa tctgaagaag
     2221 aggttaaagg ttctatgaaa ataaaaaaga attcagctcc tttacctggt gaacagcctt
     2281 tacaattgtt tgtggagaat ccgagtgaag aagatgctgc aattgtagac aaaattctat
     2341 cttctagaac cgtaaaaaag gaaatatcac ctggagtgat gattgataca gaagaatttt
     2401 ttgtaaaata caagaattac tcctatcttc actgtgagtg ggccacagaa gagcagcttt
     2461 tgaaagataa aaggatccag cagaaaatca aacgattcaa attgagacaa gcacaaagag
     2521 cacatttttt tgcagacatg gaagaagaac catttaaccc agactacgtt gaagtagaca
     2581 gagtattaga agtctctttt tgtgaagata aggatactgg tgagcctgtt atttactact
     2641 tagtaaaatg gtgctcattg ccatatgaag atagtacttg ggaactaaaa gaagatgtag
     2701 atcttgcaaa aatagaagag tttgaacaac tgcaagcttc aaggcctgac acaagacgtt
     2761 tggaccgtcc tccttctaat atttggaaga aaatagatca atccagggac tataaaaatg
     2821 gcaatcaact cagggaatat caactggaag gactcaactg gctcttgttc aattggtaca
     2881 atagacgaaa ctgcatctta gcagatgaaa tgggtcttgg caaaactatt caatcaatta
     2941 cattcctcta tgaaatcctt ctgactggta taagaggacc tttcctgatt attgctccac
     3001 tttctactat tgcaaactgg gagagagaat ttcgtacgtg gactgatatt aacgttgtgg
     3061 tttatcatgg gagcctgatt agcagacaaa tgatacagca atacgagatg tacttcaggg
     3121 attcacaggg gcgtatcatt cgaggagctt acagattcca agccatcatc accacttttg
     3181 aaatgattct tggaggctgt ggagagctta atgcaattga atggcgatgt gtgattattg
     3241 atgaagcaca taggttaaaa aataaaaatt gtaaactctt agagggcctg aaactcatga
     3301 atctggaaca caaggtgctt ttgactggca cccctctcca aaatacagtt gaagaactat
     3361 ttagtcttct tcactttctt gaacccttaa ggtttccttc tgaatcaaca tttatgcaag
     3421 aatttgggga tctgaaaaca gaggaacagg tacagaaact tcaggctatc ctgaaaccaa
     3481 tgatgttgag acgattaaaa gaagatgtgg aaaagaagtt ggcacctaaa gaagaaacca
     3541 tcattgaagt agaacttact aatattcaaa agaaatacta ccgggctatc ttggaaaaga
     3601 acttttcttt tttatccaaa ggagcaggac aaactaatgt acctaacttg gtcaatacca
     3661 tgatggagct caggaaatgt tgtaatcatc catatcttat aaaaggtgct gaggagaaaa
     3721 tacttggaga atttagagat acttacaatc cagctgcttc tgattttcat cttcaagcaa
     3781 tgatccagtc tgctggtaaa ttggtcctta ttgataaatt gcttcccaaa atgaaagccg
     3841 gaggtcataa agtgctcatc ttctctcaaa tggttcgttg ccttgacatt ctggaggact
     3901 atctcataca taaaagatac ttatatgagc gaattgatgg cagagtcaga ggaaatcttc
     3961 ggcaagctgc tatagataga tttagtaaac ctgattcaga tagatttgtt tttctcctgt
     4021 gtacccgagc tggtgggttg ggcatcaact taactgcagc tgatacatgt ataatttttg
     4081 attctgattg gaatcctcag aatgatcttc aggcccaagc tcgttgccac agaattggtc
     4141 agaacaaagc agttaaagtc tacagactgg taactcgtaa ctcatatgag agagagatgt
     4201 ttgaccgagc cagtttgaaa ctgggcctag ataaagctgt gttacagagc atgagtggaa
     4261 gagaaagtaa tgttggtggt attcagcagc tttccaaaaa ggaaatagaa gatctgcttc
     4321 gaagaggtgc ttatggtgct attatggagg aagaagatga aggctctaaa ttctgcgaag
     4381 aggatatcga tcagatttta ctacgtcgta caaaaactat tacaattgaa tcagaaggac
     4441 gtgggtcaac atttgccaag gcgagttttg tggcatctgg aaaccggaca gatatttctt
     4501 tagatgatcc caacttctgg caaaaatggg ctaaaaaggc agaaatagat atagaggcca
     4561 tcagtggcag aaacagcttg gttattgaca ctccaagaat taggaagcaa acaagacctt
     4621 ttagtgccac aaaagatgaa ttggctgaat tatctgaagc tgaaagtgaa ggagatgaaa
     4681 agcccaaact ccggagaccc tgtgaccgtt ccaatggcta tggaagaact gaatgcttta
     4741 gagttgagaa aaacctgcta gtttatgggt ggggccgatg gagagagatt ctatctcatg
     4801 gccgtttcaa aaggcagcta aatgaacacg atgtagagat aatttgccga gctctcttag
     4861 catattgcct tgttcactac cgaggagatg agaagattaa aggtttcata tgggatctca
     4921 ttactccaac tgaagatgga cagacacgag agctacagaa tcatctaggc ctatcagctc
     4981 ctgtacccag gggtcgaaaa gggaagaaag taaaaactca aacaagctca tttgatatac
     5041 aaaaagcaga atggcttcga aaatataatc ccgagcagct ccttcaagat gaaggctaca
     5101 aaaaacatat aaaacaccac tgtaataagg ttttgcttcg tgtgagaatg ctgtattatc
     5161 taaagcaaga agttattgga aatgagtgtc agaaagtatt tgatggagtt gatgcaagtg
     5221 acattgatgt ttgggtacca gaaccagacc actcagaagt tcctgctgag tggtgggatt
     5281 ttgatgctga taagtcactc cttattggag tttttaaaca tggatatgaa aaatataaca
     5341 ctattcgagc agacccagca ttatgcttct tggaaagagt gggaaaacct gatgagaaag
     5401 cagttgctgc tgaacagaga gcgaatgatt atatggatgg ggatgtggaa gatccagaat
     5461 acaaacctgc cccagccatc tttaaagatg atatagagga tgatgtttcc tcaccaggag
     5521 atcttgttat agcagatgga gatggtcaac tgatggaggg tgataaagta tattggccta
     5581 ctcaatcagc tttaaccaca cgtttgaggc gtctcatcac tgcataccag cgtactaata
     5641 aaaacagaca aattcagcag atacaaccga ctttctcggt gcctaccagt gtaatgcagc
     5701 ctatttatga ggaagccact cttaatccta aaatggcagc caagatagaa agacagcaaa
     5761 gatggacaag aagagaagaa gctgactttt atagggttgt atctacattt ggagtggttt
     5821 ttgaccctga cagaggccaa tttgattgga caaaatttag agctatggct aggctacata
     5881 agaaaactga tgatagtttg gaaaaatatt tgtacgcatt catgtccatg tgtcggaggg
     5941 tttgtcgtct tccttccaaa gaagaattgg tggatccaaa tatttttatc cagcccatca
     6001 cagaagaacg tgcttctagg actttgtatc gcattgaact tctaaggaaa gtacgggaac
     6061 aggcccttcg acatccacag ttgtttgaac gcttgaagct ttgccatcca aatccagatt
     6121 taccagtctg gtgggaatgt ggccctcatg atagggattt gcttattggt gctgccaaac
     6181 acggggtgag ccgaacagac tatcacattc ttcgtgatcc tgaactctca tttatggcag
     6241 ctcagaggaa ctacagtcaa agtaagatgg ctcattcaag gacttctacc ccacttctac
     6301 agcaatatca agtagcactt tctgcttctc ctcttacctc tctacctagg ctcctagatg
     6361 ctaaaggtat tattctagag gagatgaaag ttaaaagtga aaaccttaaa gaggagcctc
     6421 agtcttctga agaagaatct atgtcttctg tggaaaccag gacactaata aaatctgagc
     6481 ctgtaagtcc aaagaatggt gttttaccac aggctactgg agaccagaaa tctggtggaa
     6541 aatgtgaaac agacagacgc atggttgcag ccagaacaga acccctaact ccaaacccag
     6601 cttctaagaa accaagagtc cacaaaaggg gatcagaatc tagttctgat tctgactcag
     6661 attctgagag atcatcttgt tcttccagat catcttcttc ctcatcatcc tcttcttgct
     6721 cccactctcg atcaggctct agttcttctt catcttcatc ttgttcttca gcatcttctt
     6781 catcctcttc ctccacctct tcctcctcct cctcctcttc atcttcatca gaagaaagtg
     6841 acagtgatga agaagaagcc caaaaacgag aaagtactac tcacatgaaa gcctatgatg
     6901 aagaaagcgt cgcgtcactg agcactaccc aggatgagac tcaggatagt tttcagatga
     6961 acaatgggac accagagtct gcttatatct tacaaggtgg atatatgctg gcagcctcgt
     7021 attggccaaa ggatcgtgtg atgatcaata ggttggacag tatttgtcaa acagttctga
     7081 aaggaaagtg gccttcagct agaagaagtt atgatgctaa cacagtggct tctttctata
     7141 ccacaaaact gctggacagc cctggagcag ctacagaata cagcgatccc agtgtaccca
     7201 ctcccccagg tgccggtgtt aaagaagaac atgatcagtc aacacagatg tcaaaggtga
     7261 agaagcatgt acgagaaaag gagtttacag tgaaaatcaa agacgaaggt ggtttgaagt
     7321 tgacatttca gaagcaaggg cttgctcaga aaagaccatt tgatggtgaa gacggtgctc
     7381 tggggcagca gcagtacctc actcggcttc gagagcttca aagtgcatca gagaccagcc
     7441 tcgtcaattt cccaaaatcc ataccagtat caggtacttc cattcaacca acccttggtg
     7501 ccaatggtgt gatattagac aaccagccta tagtcaaaaa aaggcgagga aggaggaaga
     7561 atgtagaagg tgttgacatc ttctttttta acagaaataa accacctaat catgtttctt
     7621 taggcttaac ctcctcacag atttccacag ggataaatcc agcactatcc tatactcaac
     7681 ctcaaggaat tcctgataca gaaagtccag ttccagttat taatcttaaa gatggaacga
     7741 gacttgcagg agatgatgca ccaaagagaa aggatttgga aaaatggctt aaggagcacc
     7801 cgggttatgt ggaagatttg ggagctttta ttcctagaat gcagcttcat gagggaagac
     7861 ccaaacaaaa aagacaccgt tgcagaaacc ccaataaact agatgtgaat agtctcactg
     7921 gagaagaacg tgttcaactg attaacagaa gaaatgctag aaaggttgga ggtgcatttg
     7981 ctcccccttt gaaagattta tgtagattcc taaaagaaaa ttcagaatat ggagtagctc
     8041 ctgaatgggg agatgttgtt aagcaatctg gatttcttcc agaaagcatg tatgaacgta
     8101 ttctcactgg tcccgttgtg agagaggaag taagcaggcg ggggagacgg cctaaaagtg
     8161 gaattgcaaa ggccacagca gcagcagctg ctgcatctgc caccagtgtt tcaggcaatc
     8221 ctttgttagc caatggacta cttccaggtg tggatctcac aactcttcag gccttacaac
     8281 aaaacctaca aaacttgcag tcactgcaag taactgctgg gttgatggga atgcctaccg
     8341 gccttccttc tggaggagaa gctaaaaaca tggctgctat gttccccatg ctgctgtcag
     8401 gaatggctgg attaccaaat ctgttgggca tgggaggact cctgacaaag cctacggaat
     8461 ctgggacaga agacaaaaag ggaagtgact ctaaggagtc agaaggaaaa acagaaagga
     8521 cagagagcca aagttcagag aatggtggag aaaactctgt gtcaagttct ccttccacat
     8581 cctctactgc tgcattaaat acagctgcag ctgccaaccc attagctctt aacccactat
     8641 tactatctaa tatactttat ccagggatgc ttctcactcc aggccttaat cttcatattc
     8701 caactttgtc ccagtccaat acttttgatg tacaaaacaa aaacagtgac ttaggctcgt
     8761 ctaagtctgt agaagtaaaa gaagaagatt ccagaattaa agatcaggaa gacaaaggag
     8821 gaactgaacc aagtcctctc aatgaaaaca gcacagatga gggttcagag aaagctgatg
     8881 cttcatctgg atctgatagt acatcgtcgt catctgagga ttcagattct agtaatgaag
     8941 actgattccc agactctgca cttaaaatat gaactgattt tggatttttt ctttaataat
     9001 taattgtaaa taccccagtg ttgagtgcat caataactta ctgaccgaac atttcagtta
     9061 tttgtttaga agtgcaaact gctttcagag actttttgca tgtaatattt cttaagattc
     9121 ataagtttct gaactcgtat gtactatcaa atacataaag gtgtaaaatt acaacaaaag
     9181 gcattataat tttgttgggg gttaatttta tgaaaattat gctcaataag agttgtatat
     9241 ttaatatatt tgcagtgaac acagaatact ttatgcatat tactgattta atttgaatat
     9301 agttttacag cctccttgac acctataatt tacagatcaa aactcagcaa taatttgggc
     9361 agctaatgaa tgtcatgaaa gctgtagaat ctacatcacc atccattgct ttaattacat
     9421 gaaaatgctc tagtgttgtg atgcactgct gatgtttcca attcaggtac aagtatgttt
     9481 taaagaagaa ataagtttcc caatcagcca atttaactgg ctacctgtta cctcagctga
     9541 gttagtttag gaagtttaca ttcgtttcta attctatact tgttttcagg ggttttttaa
     9601 acacatccta tatatcatgt caatctggca agaaatatga cttgcttttt gctgagctta
     9661 attcagatat cagtaaaatt aagtcataaa ataatcatgt gtcatgtgac tttggcaccc
     9721 tatagacata cttagtttta acttttcaaa gtttggcctc ctattagaaa taatcatgtc
     9781 tcagatgagt aatgtctgtt tccagggttc agaaaaggca aactcatgaa atgccactga
     9841 aaagaacttt caacacagca tacttcatgt aaaagaaatt gtttgtttgc tttctttgtg
     9901 tagatttcta tttgtgtttt atgtcatgga aatattccag aattaacaga taatagtggt
     9961 aaagtaatat gcagatagtc taaattcatt ttgagtttct aggtgtaagc agactaaatg
    10021 ttgcccagaa tcagtgttgg gttatcagtt tatattaaat atactgagtt gcccgttttg
    10081 aaaatgcact ttgaataatc tcaaaaagat gtacaagtta tacctgtaaa ccacaaaagt
    10141 gaagcctgag gcttctgttc aatttcatag actcctttac catgtaaaat ttgtctgata
    10201 tttgatttgt gatacaattt ctcctgctaa agctgctatt attctgacaa ggtagaggtc
    10261 caggttcacc tttatatata tttaaaacaa ttagtactga attggacata aaaatattga
    10321 cattctaagg agagatatat gttagcattt ttctggtact caaataagtt agtagtaaag
    10381 tctgcaaggg cataaattta gggggaaaaa gtgtcccagt tctctcctac agaaaaaata
    10441 ctttcagtat gttttgataa aactgttgct ttgtcatgag ttagtcaatt gtatcaggtt
    10501 ttccaagacc tttaccagta aattatgttt ctgtatgtaa aataacccct tattagagag
    10561 acagtgttat atgtatttac aaaattatat aagttccatt gggattgtat tgattttgta
    10621 ttttcccaaa atagtacttt gaattgatag tcctttatgc aatgtcttag caatagtctc
    10681 tataatgccc atccaggaga agtgggtagt aattcttcat catgaaaatg atatattaca
    10741 tatttagtat cttccctttg cagtattgca cttttgttta actagaatac acctatgaga
    10801 tagccaaagt ttcaaacaca gttatcttag tttaccggtg gagtatttca acaccaacca
    10861 catttccctt cctccctcta attctaccca catgatcttt attccttcct ttcgccaatt
    10921 aaaaaaaaaa aaaaggaaaa aaaatctgta gatcttgtca ctaaaatcta atttatatca
    10981 aatttatgag agaaagtatt ttcctaatta tggtcaaata aatttggtta acatcctagt
    11041 gattctcttt ctatataata aggcaattac agttttcaaa gcattaagtc taacataact
    11101 ttaaacattc tcttaggttt caagacactt ctatttaata ttcattgggg aaaagttgtc
    11161 cagctatcag ctaagaaaac acatgcaaat atggttgtgt aaagttaagg gttataagga
    11221 aaaaaaaatc agtagaatta cataatacta aagttgcagt tgaaagaata tccaagtatg
    11281 tgttggtagt tactaaaaga attatagctg ttattgcctt gtatttatag cccttgtttc
    11341 aggttttatg attcaagtct tagtccaatc tttcttttgg acatttgcaa tatttaccag
    11401 ttgtgttttg tgtagtctga atttgctttc tgtagttgag caaacgtctt aaaaagtcat
    11461 ttgtaattta ttaaattact ttctatgatg ttctatagag caaatggaag tttaattatt
    11521 ttttattaaa catattcttt gactacc
//
