LOCUS       NM_001102601            2095 bp    mRNA    linear   PRI 09-FEB-2024
DEFINITION  Homo sapiens CCDC163 homolog (CCDC163), transcript variant 3, mRNA.
ACCESSION   NM_001102601 NR_033296 XM_934307 XM_945899
VERSION     NM_001102601.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Makalowska,I.
  TITLE     Comparative analysis of an unusual gene arrangement in the human
            chromosome 1
  JOURNAL   Gene 423 (2), 172-179 (2008)
   PUBMED   18672041
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DC421969.1, BC101256.1 and AL451136.11.
            
            On Nov 22, 2018 this sequence version replaced NM_001102601.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC101256.1, SRR9304717.657763.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1968540
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000629482.3/ ENSP00000486197.1
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                DC421969.1         8-106
            100-1052            BC101256.1         1-953
            1053-2095           AL451136.11        110181-111223       c
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
                     /map="1p34.1"
     gene            1..2095
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
                     /note="CCDC163 homolog"
                     /db_xref="GeneID:126661"
                     /db_xref="HGNC:HGNC:27003"
     exon            1..542
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
                     /inference="alignment:Splign:2.1.0"
     CDS             465..902
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
                     /note="isoform 1 is encoded by transcript variant 3;
                     coiled-coil domain containing 163, pseudogene; coiled-coil
                     domain-containing protein 163; transmembrane protein
                     CCDC163"
                     /codon_start=1
                     /product="transmembrane protein CCDC163 isoform 1"
                     /protein_id="NP_001096071.1"
                     /db_xref="GeneID:126661"
                     /db_xref="HGNC:HGNC:27003"
                     /translation="MNTSLSWFEQLDVLLNATDGNVVRNKQWLYPLGVSTELIGLCIC
                     FFCSSGCIFLGSPPQNSTAVTPAVLWEESEIMQKELKLLQYQLSQHQELLLKQLAEGR
                     QAQVGSWKIPRGAPFLTWSPASFSSMPRVLSKRTYSFGAPKCS"
     exon            543..641
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
                     /inference="alignment:Splign:2.1.0"
     exon            642..726
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
                     /inference="alignment:Splign:2.1.0"
     exon            727..794
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
                     /inference="alignment:Splign:2.1.0"
     exon            795..2095
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2004..2009
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
                     /note="hexamer: AATAAA"
     polyA_site      2030
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
                     /note="major polyA site"
     regulatory      2073..2078
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
                     /note="hexamer: ATTAAA"
     polyA_site      2095
                     /gene="CCDC163"
                     /gene_synonym="C1orf231; CCDC163P"
ORIGIN      
        1 agttccaccg cctccatcgc cggttgtgtt cgcaagaggc gacctcagtt tcccaggtgg
       61 cgctgcggca gccagtccaa agtcggactt tcaaaaccaa cccgaagttt tgaacccggc
      121 ggcggcagtt gtcactggca caggtttggc gtggtggcgc cagtgtacta cttctgggga
      181 ggtctcaacc aggttctggc accttcaatc cccacctgat atctgcgtat catcacggta
      241 tcccgctttt cccccagttc cccaagagcg tccttccttt ccctagtcac aggatcgcag
      301 ttttggtctg atagtgcatc cacctacccc agtgttgcat ccccacttcc ctctttccat
      361 ctaacgtggt ggcctttcct ggggatacct tgggtatccc ccgctaggag agcaagcaca
      421 agacaccagg gagccagacc cctgccgctc ccctgccaca ggatatgaat acgagcctca
      481 gctggtttga gcagctggat gtgcttctca acgctactga tggaaatgtg gtccggaata
      541 agcagtggct gtatcctctt ggggtctcca cagagctcat tggcctgtgc atctgtttct
      601 tctgtagcag tggctgtatc ttcttggggt ctccaccgca gaatagcact gctgtcactc
      661 ctgcagtgct gtgggaggag tcagagatta tgcagaagga attgaagttg ctgcagtacc
      721 agttgagcca gcaccaggag ctgctgctga aacagctggc tgagggacga caggctcagg
      781 ttggcagttg gaagatcccc agaggagcac cctttctaac ctggagccca gcatctttca
      841 gctccatgcc cagagtctta agcaagagga cctattcctt tggggcccca aaatgctcct
      901 gaatgacctg taaggactcg ttaagaatag taggatgaag gcttctttgc ccaccctccc
      961 ctccaaggcc ctgtttctgg gctgcccgcc cctaccttct tgaagtagct attatctgtc
     1021 ttatctactg aggcttttca ctgcctgccc atccttgccc cccatctcag ctcactgcaa
     1081 cctccgcctc ccaggttcaa gcaattgtcc tgcctcagcc tcccaagtag ctgggattac
     1141 aggtgtgcgc taatttttgt atttttagta gagatggggt ttcaccatgt tggccagtct
     1201 ggtcttgaac ttctgacctc aagtgatctg cccgcctcgc cctcccaaag tgctgggatt
     1261 acagttgtga gccaccatgc ccagcctata gctgtacctt ctgagtgcaa gctcagttga
     1321 acttggaaag taatgggagt tcccattctg gtgagtagaa tgaggtagga cactgctcta
     1381 gggcagtagt gctgggggat gcaaaggagg atgagatatt ctggtgggac ttggatctgg
     1441 acagtaggag gctacctttc ctcatctcca gcttctgcct tttttttttt tttttttgag
     1501 gcaaggtctt actcagttgc ccaggctgga gtgcagtggc atgatcttgg ctcactgcag
     1561 cctccgcttc ctgtactaaa gcaatcctcc caccttagcc ccccaagtaa taatatatgg
     1621 gactacaggc acacgctatc atgcctggct aatttttaaa tattttttgt agagacaggt
     1681 tttcaccatg ttgcccaggc tggtctcgaa ctcctgggct caactgatcc accaactttg
     1741 gcctcccaaa gtgttcagat tacaggtgtg agctgctacc atgcctagcc ccagcttcta
     1801 ctgcttgagg ctctctttgg catctccaca catcatcctt agcagcccag actgcatttc
     1861 tgtagcagcc tcttccctgg tctcttcttt cagtctctct gcctctaatc cagtggcttt
     1921 aagaattttt tggctgtgac ttccagtaag aaatacaatt tacattgtga cctagtaaat
     1981 atgtgtgtag atttattaac tgaaataaaa atgttatgat ttaattttta tccttagtgg
     2041 gagtgataca ctgatatttt ctattatatt tcattaaaaa atgccttgtg actaa
//
