LOCUS       NM_030939               2452 bp    mRNA    linear   PRI 10-FEB-2024
DEFINITION  Homo sapiens chromosome 6 open reading frame 62 (C6orf62),
            transcript variant 1, mRNA.
ACCESSION   NM_030939
VERSION     NM_030939.5
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Mungall,A.J., Palmer,S.A., Sims,S.K., Edwards,C.A., Ashurst,J.L.,
            Wilming,L., Jones,M.C., Horton,R., Hunt,S.E., Scott,C.E.,
            Gilbert,J.G., Clamp,M.E., Bethel,G., Milne,S., Ainscough,R.,
            Almeida,J.P., Ambrose,K.D., Andrews,T.D., Ashwell,R.I.,
            Babbage,A.K., Bagguley,C.L., Bailey,J., Banerjee,R., Barker,D.J.,
            Barlow,K.F., Bates,K., Beare,D.M., Beasley,H., Beasley,O.,
            Bird,C.P., Blakey,S., Bray-Allen,S., Brook,J., Brown,A.J.,
            Brown,J.Y., Burford,D.C., Burrill,W., Burton,J., Carder,C.,
            Carter,N.P., Chapman,J.C., Clark,S.Y., Clark,G., Clee,C.M.,
            Clegg,S., Cobley,V., Collier,R.E., Collins,J.E., Colman,L.K.,
            Corby,N.R., Coville,G.J., Culley,K.M., Dhami,P., Davies,J.,
            Dunn,M., Earthrowl,M.E., Ellington,A.E., Evans,K.A., Faulkner,L.,
            Francis,M.D., Frankish,A., Frankland,J., French,L., Garner,P.,
            Garnett,J., Ghori,M.J., Gilby,L.M., Gillson,C.J., Glithero,R.J.,
            Grafham,D.V., Grant,M., Gribble,S., Griffiths,C., Griffiths,M.,
            Hall,R., Halls,K.S., Hammond,S., Harley,J.L., Hart,E.A.,
            Heath,P.D., Heathcott,R., Holmes,S.J., Howden,P.J., Howe,K.L.,
            Howell,G.R., Huckle,E., Humphray,S.J., Humphries,M.D., Hunt,A.R.,
            Johnson,C.M., Joy,A.A., Kay,M., Keenan,S.J., Kimberley,A.M.,
            King,A., Laird,G.K., Langford,C., Lawlor,S., Leongamornlert,D.A.,
            Leversha,M., Lloyd,C.R., Lloyd,D.M., Loveland,J.E., Lovell,J.,
            Martin,S., Mashreghi-Mohammadi,M., Maslen,G.L., Matthews,L.,
            McCann,O.T., McLaren,S.J., McLay,K., McMurray,A., Moore,M.J.,
            Mullikin,J.C., Niblett,D., Nickerson,T., Novik,K.L., Oliver,K.,
            Overton-Larty,E.K., Parker,A., Patel,R., Pearce,A.V., Peck,A.I.,
            Phillimore,B., Phillips,S., Plumb,R.W., Porter,K.M., Ramsey,Y.,
            Ranby,S.A., Rice,C.M., Ross,M.T., Searle,S.M., Sehra,H.K.,
            Sheridan,E., Skuce,C.D., Smith,S., Smith,M., Spraggon,L.,
            Squares,S.L., Steward,C.A., Sycamore,N., Tamlyn-Hall,G., Tester,J.,
            Theaker,A.J., Thomas,D.W., Thorpe,A., Tracey,A., Tromans,A.,
            Tubby,B., Wall,M., Wallis,J.M., West,A.P., White,S.S.,
            Whitehead,S.L., Whittaker,H., Wild,A., Willey,D.J., Wilmer,T.E.,
            Wood,J.M., Wray,P.W., Wyatt,J.C., Young,L., Younger,R.M.,
            Bentley,D.R., Coulson,A., Durbin,R., Hubbard,T., Sulston,J.E.,
            Dunham,I., Rogers,J. and Beck,S.
  TITLE     The DNA sequence and analysis of human chromosome 6
  JOURNAL   Nature 425 (6960), 805-811 (2003)
   PUBMED   14574404
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL133264.10, BC047866.1 and BC040260.1.
            
            On Nov 22, 2018 this sequence version replaced NM_030939.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189661.73477.1,
                                           SRR1803615.165768.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2155371, SAMEA2163105
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000378119.9/ ENSP00000367359.4
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-288               AL133264.10        4938-5225           c
            289-1802            BC047866.1         1-1514
            1803-2452           BC040260.1         1336-1985
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
                     /map="6p22.3"
     gene            1..2452
                     /gene="C6orf62"
                     /gene_synonym="dJ30M3.2; Nbla00237; XTP12"
                     /note="chromosome 6 open reading frame 62"
                     /db_xref="GeneID:81688"
                     /db_xref="HGNC:HGNC:20998"
     exon            1..615
                     /gene="C6orf62"
                     /gene_synonym="dJ30M3.2; Nbla00237; XTP12"
                     /inference="alignment:Splign:2.1.0"
     CDS             487..1176
                     /gene="C6orf62"
                     /gene_synonym="dJ30M3.2; Nbla00237; XTP12"
                     /note="isoform 1 is encoded by transcript variant 1; HBV
                     X-transactivated protein 12; HBV XAg-transactivated
                     protein 12; HBV X-transactivated gene 12 protein;
                     uncharacterized protein C6orf62"
                     /codon_start=1
                     /product="uncharacterized protein C6orf62 isoform 1"
                     /protein_id="NP_112201.1"
                     /db_xref="CCDS:CCDS4559.1"
                     /db_xref="GeneID:81688"
                     /db_xref="HGNC:HGNC:20998"
                     /translation="MGDPNSRKKQALNRLRAQLRKKKESLADQFDFKMYIAFVFKEKK
                     KKSALFEVSEVIPVMTNNYEENILKGVRDSSYSLESSLELLQKDVVQLHAPRYQSMRR
                     DVIGCTQEMDFILWPRNDIEKIVCLLFSRWKESDEPFRPVQAKFEFHHGDYEKQFLHV
                     LSRKDKTGIVVNNPNQSVFLFIDRQHLQTPKNKATIFKLCSICLYLPQEQLTHWAVGT
                     IEDHLRPYMPE"
     exon            616..792
                     /gene="C6orf62"
                     /gene_synonym="dJ30M3.2; Nbla00237; XTP12"
                     /inference="alignment:Splign:2.1.0"
     exon            793..915
                     /gene="C6orf62"
                     /gene_synonym="dJ30M3.2; Nbla00237; XTP12"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1050
                     /gene="C6orf62"
                     /gene_synonym="dJ30M3.2; Nbla00237; XTP12"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..2452
                     /gene="C6orf62"
                     /gene_synonym="dJ30M3.2; Nbla00237; XTP12"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2407..2412
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C6orf62"
                     /gene_synonym="dJ30M3.2; Nbla00237; XTP12"
                     /note="hexamer: AATAAA"
     polyA_site      2452
                     /gene="C6orf62"
                     /gene_synonym="dJ30M3.2; Nbla00237; XTP12"
                     /note="major polyA site"
ORIGIN      
        1 gaaagcaagg atcacacttc cccctccctg ttccttaatc ccttttctaa aaagggggga
       61 aaatccggat ggattttagg gattggtctg gtgtcagctg tgttttattg cacacctaaa
      121 tcctgattat aggcttttca tttctccgca aagcctttat tttggcagtt aagccaaatg
      181 tgttttccag aaagttagtt attttctcct ctttctttcc tttctttcct ccctttttcc
      241 cgtctgaccc caaacgttat tgtccaaaca tgactggaca gcagcttttg tttcttgacc
      301 ctgtaatatg acagtctgct aatattgaca gaaggtgcag tttttgggtt atagtcgtga
      361 ttttcgctaa tcaatcatat tagcaggaaa aaaaatgact tgtttctgtt gtacttgagt
      421 cttaagaaaa agtgcccata gtttagtgac aatttccaaa ggctttagta ccacctgtat
      481 ttcaaaatgg gggacccaaa ctcccggaag aaacaagctc tgaacagact acgtgctcag
      541 cttagaaaga aaaaagaatc tctagctgac cagtttgact tcaagatgta tattgccttt
      601 gtattcaagg agaagaagaa aaagtcagca ctttttgaag tgtctgaggt tataccagtc
      661 atgacaaata attatgaaga aaatatcctg aaaggtgtgc gagattccag ctattccttg
      721 gaaagttccc tagagctttt acagaaggat gtggtacagc tccatgctcc tcgatatcag
      781 tctatgagaa gggatgtaat tggctgtact caggagatgg atttcattct ttggcctcgg
      841 aatgatattg aaaaaatcgt ctgtctcctg ttttctaggt ggaaagaatc tgatgagcct
      901 tttaggcctg ttcaggccaa atttgagttt catcatggtg actatgaaaa acagtttctg
      961 catgtactga gccgcaagga caagactgga atcgttgtca acaatcctaa ccagtcagtg
     1021 tttctcttca ttgacagaca gcacttgcag actccaaaaa acaaagctac aatcttcaag
     1081 ttatgcagca tctgcctcta cctgccacag gaacagctca cccactgggc agttggcacc
     1141 atagaggatc acctccgtcc ttatatgcca gagtagagta ctgaccagca aaatggagaa
     1201 gatcagagaa tgcagcagca gttttttttc ttgttttctt accactttat tctttcagag
     1261 tttaaagaaa atggactcat gcacagaaca ctatgcattt tgaaacttgt tcatcctgga
     1321 tttttttaaa tcatttttat ctcagaactt aaacaaaaat tagatgtcgt gcacggactg
     1381 tgtgaaagaa gatgctttgc atatttgctg cactgcatca gtatcttact aaaaatgtga
     1441 aatgaaagga ctattgtaca ctgaaatgct taaatgtatc tgaaagcaca aggtgatact
     1501 catttttatg gtcttcccat ttgtgctggt ttttgcctct ttgacatctg tcatcagtat
     1561 ttagagggtg agaagtgaat gtaacaggta taaataacat ttttaaaaac aataactttg
     1621 ctataatcac agttgttcca gagcactgtc agatacattc taatgaccag aactggttta
     1681 aaaaaagaaa atacaaccat gggaaagaaa tcttaaatga aaaacgcatc tcattgtagg
     1741 catttttgcc tcatatttta ctgggccatg tttgtttcct ggtactcatg tatttttttt
     1801 ttccagatct ctttccccaa gttgctattg taagagtatt ctgctgcgtg tggatgcagt
     1861 tatacacatt aaagcagatc tggagtctga agtagctata aagcagctat aaaacagaaa
     1921 tacatgcata gctgcagaaa ccatgatagg tagaggactt ttcttttggt tttgttttgt
     1981 tttgttttgt tttgtttttg gttttacaga gaagagattt ttattacaaa gaaaaaaatt
     2041 ccagtgaatt gtgcagaaat gctggttttt acaccatcct aaagaaaaac tttacaaggg
     2101 tgttttggag tagaaaaaag gttataaagt tggaatctta aattgtaaaa ttaaccattg
     2161 agtgtcaaag ttctaaaagc agaactcatt ttgtgcaatg aacataagga aagactactg
     2221 tataggtttt tttttttttc tccttttaaa tgaagaaaag ctttgcttaa gggttgcata
     2281 cttttattgg agtaaatctg aatgatccta ctcctttgga gtaaaactag tgcttaccag
     2341 tttccaattg tatttagctt ctggttggaa tttgaaaaaa aaagaaaaaa agaaaaagaa
     2401 aacctaaata aaataggtga aagttccctg actattcagg tgaatacaca aa
//
