LOCUS       NM_001144954            2511 bp    mRNA    linear   PRI 10-FEB-2024
DEFINITION  Homo sapiens chromosome 5 open reading frame 47 (C5orf47), mRNA.
ACCESSION   NM_001144954 XM_001715744 XM_376444 XM_941190
VERSION     NM_001144954.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Khan,R., Ye,J., Yousaf,A., Shah,W., Aftab,A., Shah,B., Zaman,Q.,
            Zubair,M., Shi,Q. and Jiang,X.
  TITLE     Evolutionarily conserved and testis-specific gene, 4930524B15Rik,
            is not essential for mouse spermatogenesis and fertility
  JOURNAL   Mol Biol Rep 47 (7), 5207-5213 (2020)
   PUBMED   32592116
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC092489.1 and BC066964.1.
            
            On Nov 23, 2018 this sequence version replaced NM_001144954.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC092489.1, BC066964.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000340147.7/ ENSP00000340887.6
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1515              BC092489.1         1-1515
            1516-2417           BC066964.1         1489-2390
            2418-2511           BC092489.1         2417-2510
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="5"
                     /map="5q35.2"
     gene            1..2511
                     /gene="C5orf47"
                     /note="chromosome 5 open reading frame 47"
                     /db_xref="GeneID:133491"
                     /db_xref="HGNC:HGNC:27026"
                     /db_xref="MIM:620002"
     exon            1..419
                     /gene="C5orf47"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..625
                     /gene="C5orf47"
                     /codon_start=1
                     /product="uncharacterized protein C5orf47"
                     /protein_id="NP_001138426.1"
                     /db_xref="CCDS:CCDS47343.1"
                     /db_xref="GeneID:133491"
                     /db_xref="HGNC:HGNC:27026"
                     /db_xref="MIM:620002"
                     /translation="MAAAGRGREQDSARFVYVTRFGSHQCSGVLQLGGRGAQGLWGQG
                     PGAGCRQEKPREAMAVAGVQGGSELPLGSQLRVPTTPGVEAAASASSQLRASRVQSGT
                     RQSARAGLIQKDAAKKYDFPIPLNEASKIMKKKKKVLVWNRVYKVISRMLEENEKYRH
                     RLKCQRLSSESSNYTR"
     exon            420..505
                     /gene="C5orf47"
                     /inference="alignment:Splign:2.1.0"
     exon            506..605
                     /gene="C5orf47"
                     /inference="alignment:Splign:2.1.0"
     exon            606..641
                     /gene="C5orf47"
                     /inference="alignment:Splign:2.1.0"
     exon            642..2511
                     /gene="C5orf47"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1032..1037
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C5orf47"
                     /note="hexamer: ATTAAA"
     polyA_site      1056
                     /gene="C5orf47"
                     /note="major polyA site"
     regulatory      2382..2387
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C5orf47"
                     /note="hexamer: AATAAA"
     polyA_site      2410
                     /gene="C5orf47"
                     /note="major polyA site"
     regulatory      2492..2497
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C5orf47"
                     /note="hexamer: ATTAAA"
     polyA_site      2511
                     /gene="C5orf47"
ORIGIN      
        1 aaccgctccc gcatccctcg cctgcacagt gggcagtctg gcgcctgtgg cgtcgtgttt
       61 gctgagggcc cggctgccgt tgactgaggc tgcgatggcg gcggcaggcc ggggtcggga
      121 gcaggactcg gcgcgcttcg tctatgtgac gcgcttcggc tcgcatcagt gcagtggcgt
      181 cctgcaactg ggcggccgtg gagctcaagg cctttggggt caggggcctg gggcaggctg
      241 tcgccaggag aagccgaggg aagcaatggc ggtggcgggc gttcagggtg gcagcgagct
      301 gcccctcggt tcccagctca gggtccccac gacccctggt gtggaggctg cggcctctgc
      361 ctcctcccag ctgcgggcat cgagagttca gagcggcacc agacagtcgg cgcgtgcagg
      421 tttaatccag aaggatgcag ctaaaaagta tgattttccc ataccattga atgaagcttc
      481 caaaataatg aagaaaaaga aaaaggtttt agtatggaat agagtataca aagtcatttc
      541 aagaatgctt gaagaaaatg aaaaatatag acacaggctg aaatgccaaa ggttatctag
      601 tgaaagctca aattacacaa gatgaatctt cttatcttct ggaataacct atctttggat
      661 gtttcccaaa gaagagtatg aagaatctaa agatgaaaca ttaaatgaat cataattatt
      721 tgttaatttt gatgtgtttt attagaattg ggactttagt agtcgaacag aaaaattacc
      781 ttctttataa attaataata tttctttgct acttaataat acctttagtt aaatattgtt
      841 aaccatatgc atgcaagtgt tattttcaga attaatgctt attctacata cttttaaatt
      901 aacctcatac ataaaattaa attagcatat caatgcaatt gcatgaattt tataattacc
      961 agcttttcca ttttattaat gagtctacaa ctgctgcttt gttcatctct tcttttagat
     1021 gtaactctta aattaaactt ggattcattt aaattatttt tggcttcctc taaacttctc
     1081 aattatttta tggaaaaaac cttagaattt acatagcaac gattattttg ggtgttaaaa
     1141 ctaagctaat gattatttaa gccatctttt catcctaagg aaaattagta aatgtatgca
     1201 tttataatat ggatatatta taatggacta tattataata tggagtattt taggaaaatt
     1261 tttgggcaaa gatcagagga gatgcccttt accttgccag gcccctaagt aatacattat
     1321 ttttaagtca atgaatgaga ggattagaat tctgaaaatc atttagaagt attgtttaat
     1381 aagtcctttt tttctactca acattaagta gtaatcaact tttacctccg ccagtttttc
     1441 tgcttttttg ctggtacgat ctctctttct aaattgaatc aaagacctag gtggaactgg
     1501 aaacttagga gggaaagaca aaatgaggct tgttcatgat caaattctgt gtactctagt
     1561 tgcttctttc ccttggagtg acaggtactt ttatatccag gatgattaca gtgatgacat
     1621 ccattctttt ttgggggcat tgagaaggtg ggcttcctaa ttattttaca aaggtattac
     1681 aaagtgttaa tatacaaaat tctcatgaaa tagtacaagt tgtaaggact gtaaagtaat
     1741 tcatagtttt gttttttcct ctaatagttg taacttaatt acttcaggag actacgacag
     1801 tgtagaattt gtggtaacat gatcttctag tgactattta tcaaatccac ctgtttctag
     1861 atgaaggaca cattgcctgg ggaaatggcc tcggtttttt tgccatgtag gctctcaagt
     1921 ttccctgcat tgagggtcac acaacttctt tatattatgc tgggtaaatt tcaggctgct
     1981 aaatccttgg gtgaagcttc aaattttagc ttatgcaact gaagtccatt gcaaaatgag
     2041 acatatttac actgtttata ctgtaattta tgctgcataa agttttgtag tgaatgtgta
     2101 tgagagtttt aggtttgctt caatgtatgt ttatatttat gtgacttata caacttgaca
     2161 tagtagtctg ttttaattta ttaggtatat caatatttgt tagatttaaa ataagagtct
     2221 aatgctggat acaaactcag tttatttcac tgttctagaa ccatggagga atgaagactc
     2281 ccactgaaat gaatgttcta aatatttgtt ctaaatcttt taatttttgt ttaataattt
     2341 ctggtgaata tgtgttcaat ctgttatgtt aaatagaata taataaacat aagacttttc
     2401 tttactgata catcactgaa cataagctgc aatactttaa cttatttctg ttccataatt
     2461 tcagtagggg ctaatgaccc acccctgcta cattaaagac ttcagactgc a
//
