LOCUS       NM_001136482            1210 bp    mRNA    linear   PRI 04-APR-2024
DEFINITION  Homo sapiens chromosome 19 open reading frame 38 (C19orf38), mRNA.
ACCESSION   NM_001136482 XM_001726718 XM_001726719 XM_172995 XM_930239
            XM_938361 XM_943649
VERSION     NM_001136482.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1210)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
REFERENCE   2  (bases 1 to 1210)
  AUTHORS   Grimwood,J., Gordon,L.A., Olsen,A., Terry,A., Schmutz,J.,
            Lamerdin,J., Hellsten,U., Goodstein,D., Couronne,O.,
            Tran-Gyamfi,M., Aerts,A., Altherr,M., Ashworth,L., Bajorek,E.,
            Black,S., Branscomb,E., Caenepeel,S., Carrano,A., Caoile,C.,
            Chan,Y.M., Christensen,M., Cleland,C.A., Copeland,A., Dalin,E.,
            Dehal,P., Denys,M., Detter,J.C., Escobar,J., Flowers,D.,
            Fotopulos,D., Garcia,C., Georgescu,A.M., Glavina,T., Gomez,M.,
            Gonzales,E., Groza,M., Hammon,N., Hawkins,T., Haydu,L., Ho,I.,
            Huang,W., Israni,S., Jett,J., Kadner,K., Kimball,H., Kobayashi,A.,
            Larionov,V., Leem,S.H., Lopez,F., Lou,Y., Lowry,S., Malfatti,S.,
            Martinez,D., McCready,P., Medina,C., Morgan,J., Nelson,K.,
            Nolan,M., Ovcharenko,I., Pitluck,S., Pollard,M., Popkie,A.P.,
            Predki,P., Quan,G., Ramirez,L., Rash,S., Retterer,J., Rodriguez,A.,
            Rogers,S., Salamov,A., Salazar,A., She,X., Smith,D., Slezak,T.,
            Solovyev,V., Thayer,N., Tice,H., Tsai,M., Ustaszewska,A., Vo,N.,
            Wagner,M., Wheeler,J., Wu,K., Xie,G., Yang,J., Dubchak,I.,
            Furey,T.S., DeJong,P., Dickson,M., Gordon,D., Eichler,E.E.,
            Pennacchio,L.A., Richardson,P., Stubbs,L., Rokhsar,D.S.,
            Myers,R.M., Rubin,E.M. and Lucas,S.M.
  TITLE     The DNA sequence and biology of human chromosome 19
  JOURNAL   Nature 428 (6982), 529-535 (2004)
   PUBMED   15057824
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC007565.1.
            
            On Nov 22, 2018 this sequence version replaced NM_001136482.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1163655.683735.1,
                                           SRR1163655.418616.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000397820.5/ ENSP00000380920.3
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               AC007565.1         7661-7785
            126-434             AC007565.1         9505-9813
            435-527             AC007565.1         15511-15603
            528-555             AC007565.1         17562-17589
            556-599             AC007565.1         19161-19204
            600-637             AC007565.1         22416-22453
            638-1210            AC007565.1         28464-29036
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19p13.2"
     gene            1..1210
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /note="chromosome 19 open reading frame 38"
                     /db_xref="GeneID:255809"
                     /db_xref="HGNC:HGNC:34073"
     exon            1..125
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..787
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /note="Highly expressed in immature dendritic cell
                     transcript 1; Protein HIDE1"
                     /codon_start=1
                     /product="protein HIDE1 precursor"
                     /protein_id="NP_001129954.1"
                     /db_xref="CCDS:CCDS45970.1"
                     /db_xref="GeneID:255809"
                     /db_xref="HGNC:HGNC:34073"
                     /translation="MPWTILLFAAGSLAIPAPSIRLVPPYPSSQEDPIHIACMAPGNF
                     PGANFTLYRGGQVVQLLQAPTDQRGVTFNLSGGSSKAPGGPFHCQYGVLGELNQSQLS
                     DLSEPVNVSFPVPTWILVLSLSLAGALFLLAGLVAVALVVRKVKLRNLQKKRDRESCW
                     AQINFDSTDMSFDNSLFTVSAKTMPEEDPATLDDHSGTTATPSNSRTRKRPTSTSSSP
                     ETPEFSTFRACQ"
     exon            126..434
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /inference="alignment:Splign:2.1.0"
     exon            435..527
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /inference="alignment:Splign:2.1.0"
     exon            528..555
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /inference="alignment:Splign:2.1.0"
     exon            556..599
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /inference="alignment:Splign:2.1.0"
     exon            600..637
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /inference="alignment:Splign:2.1.0"
     exon            638..1210
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1188..1193
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /note="hexamer: ATTATA"
     polyA_site      1210
                     /gene="C19orf38"
                     /gene_synonym="HIDE1"
                     /note="major polyA site"
ORIGIN      
        1 ctcctttccc cgatctggcc tcacaggagg agttggcggg gagccttggg cccctctggc
       61 ctcagccgga tttcccagcc aaacgcagag agagatgccc tggaccatct tgctctttgc
      121 agctggctcc ttggcgatcc cagcaccatc catccggctg gtgcccccgt acccaagcag
      181 ccaagaggac cccatccaca tcgcatgcat ggcccctggg aacttcccgg gggcgaattt
      241 cacactgtat cgaggggggc aggtggtcca gctcctgcag gcccccacgg accagcgcgg
      301 ggtgacattt aacctgagcg gcggcagcag caaggctcca gggggaccct tccactgcca
      361 gtatggagtg ttaggtgagc tcaaccagtc ccagctgtca gacctcagcg agcccgtgaa
      421 cgtctccttc ccagtgccca cttggatctt ggtgctctcc ctgagcctgg ctggtgccct
      481 cttcctcctt gctgggctgg tggctgttgc cctggtggtc agaaaagtta aactcagaaa
      541 tttacagaag aaaagagatc gagaatcctg ctgggcccag attaacttcg acagcacaga
      601 catgtccttc gataactccc tgtttaccgt ctccgcgaaa acgatgccag aagaagaccc
      661 ggccaccttg gatgatcact caggcaccac tgccaccccc agcaactcca ggacccggaa
      721 gaggcccact tccacgtcct cctcgcctga gacccccgaa ttcagcactt tccgggcctg
      781 ccagtgaggc tgaggactgg gggacccctc tgtctccagg cattcggggg cctgaggtcc
      841 ctccagctac ttctgggggg gctctgtcag ccactttctc agggaattgg acagaggaaa
      901 ggaaggggaa ccctggcctt gggattttca tcacagagga gtgggagagg ggacacaggc
      961 atgggcctgg cactatacag acaacaggaa gttcccctct cgaccttcgg ctcctcagga
     1021 ccaccagaga aggagatgtc aggacccctt cttgtccccc agctgggcca taagacgtcc
     1081 caggtctctg cacacccgtg gaattcctcc cttccccagt gggtttttga gcatagggtg
     1141 cccttgggtg tgttgtgtgt ctgcctgctg gcttgcttaa gttattaatt ataacacggg
     1201 tcaaggtgtt
//
