LOCUS       NM_001351589            3075 bp    mRNA    linear   PRI 13-OCT-2024
DEFINITION  Homo sapiens chromosome 13 open reading frame 42 (C13orf42),
            transcript variant 3, mRNA.
ACCESSION   NM_001351589
VERSION     NM_001351589.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3075)
  AUTHORS   Lauc,G., Huffman,J.E., Pucic,M., Zgaga,L., Adamczyk,B., Muzinic,A.,
            Novokmet,M., Polasek,O., Gornik,O., Kristic,J., Keser,T.,
            Vitart,V., Scheijen,B., Uh,H.W., Molokhia,M., Patrick,A.L.,
            McKeigue,P., Kolcic,I., Lukic,I.K., Swann,O., van Leeuwen,F.N.,
            Ruhaak,L.R., Houwing-Duistermaat,J.J., Slagboom,P.E., Beekman,M.,
            de Craen,A.J., Deelder,A.M., Zeng,Q., Wang,W., Hastie,N.D.,
            Gyllensten,U., Wilson,J.F., Wuhrer,M., Wright,A.F., Rudd,P.M.,
            Hayward,C., Aulchenko,Y., Campbell,H. and Rudan,I.
  TITLE     Loci associated with N-glycosylation of human immunoglobulin G show
            pleiotropy with autoimmune diseases and haematological cancers
  JOURNAL   PLoS Genet 9 (1), e1003225 (2013)
   PUBMED   23382691
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL160157.17.
            
            On Dec 23, 2020 this sequence version replaced NM_001351589.2.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR18074967.1813747.1,
                                           SRR18074967.732286.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148874
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000563710.7/ ENSP00000490517.1
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-479               AL160157.17        111191-111669       c
            480-627             AL160157.17        88323-88470         c
            628-868             AL160157.17        85714-85954         c
            869-3075            AL160157.17        82514-84720         c
FEATURES             Location/Qualifiers
     source          1..3075
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="13"
                     /map="13q14.3"
     gene            1..3075
                     /gene="C13orf42"
                     /gene_synonym="LINC00371; LINC00372"
                     /note="chromosome 13 open reading frame 42"
                     /db_xref="GeneID:647166"
                     /db_xref="HGNC:HGNC:42693"
     exon            1..479
                     /gene="C13orf42"
                     /gene_synonym="LINC00371; LINC00372"
                     /inference="alignment:Splign:2.1.0"
     CDS             66..1043
                     /gene="C13orf42"
                     /gene_synonym="LINC00371; LINC00372"
                     /note="long intergenic non-protein coding RNA 372; long
                     intergenic non-protein coding RNA 371"
                     /codon_start=1
                     /product="uncharacterized protein C13orf42"
                     /protein_id="NP_001338518.1"
                     /db_xref="CCDS:CCDS86352.1"
                     /db_xref="GeneID:647166"
                     /db_xref="HGNC:HGNC:42693"
                     /translation="MFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGD
                     HGEKFSESLKKYKSTSSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSS
                     FSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFD
                     SIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTV
                     HTVDGQFRRSTEHRTVGTQRRLERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQIL
                     FNFSGEDMEWDAELFALEPQLSPGEDYYETENPKGQWLLRERLWERTVP"
     exon            480..627
                     /gene="C13orf42"
                     /gene_synonym="LINC00371; LINC00372"
                     /inference="alignment:Splign:2.1.0"
     exon            628..868
                     /gene="C13orf42"
                     /gene_synonym="LINC00371; LINC00372"
                     /inference="alignment:Splign:2.1.0"
     exon            869..3075
                     /gene="C13orf42"
                     /gene_synonym="LINC00371; LINC00372"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2762..2767
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C13orf42"
                     /gene_synonym="LINC00371; LINC00372"
                     /note="hexamer: AATAAA"
     polyA_site      2781
                     /gene="C13orf42"
                     /gene_synonym="LINC00371; LINC00372"
                     /note="major polyA site"
     regulatory      3051..3056
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C13orf42"
                     /gene_synonym="LINC00371; LINC00372"
                     /note="hexamer: AATAAA"
     polyA_site      3075
                     /gene="C13orf42"
                     /gene_synonym="LINC00371; LINC00372"
                     /note="major polyA site"
ORIGIN      
        1 gcatctagat caagtggcgg cagcacaggc agctggaagg tacccacaga aagaaatcga
       61 gcactatgtt cagaaagatc cactccatct ttaactccag cccacagaga aagacggcgg
      121 ccgagagccc cttctacgaa ggagccagcc ccgcagtgaa gctgattcga agcagttcca
      181 tgtatgtggt cggggaccac ggggagaaat tcagcgagtc cttaaagaag tacaaaagca
      241 ccagtagcat ggacaccagc ctgtactacc tgcggcagga ggaggaccgg gcgtggatgt
      301 attcgcgcac ccaggactgc ctgcagtacc tgcaggagct gctggccttg cgcaaaaaat
      361 atctcagcag cttcagtgat ctgaagcccc accgcaccca ggggatttcc tcaacctcct
      421 ccaaatcctc caagggaggg aaaaagactc ctgtccggtc tactcccaaa gaaataaaga
      481 aagcaacccc aaagaaatac tcgcagttca gtgctgatgt ggccgaggcc attgccttct
      541 ttgactccat cattgcagag ctggatacag agagacgacc ccgggctgct gaggccagcc
      601 tgccaaatga agatgtggac tttgacgtgg ccaccagctc cagggagcac agcttgcatt
      661 ctaactggat cctgcgggca ccgcgcagac actccgagga tatcgctgcc cacactgtgc
      721 atactgtaga cggccagttt cgaaggagca ccgagcacag gaccgtgggc actcagagga
      781 gactcgagag gcaccccatt tatttgccca aggctgtgga aggggccttc aacacctgga
      841 aatttaagcc caaagcctgc aaaaaagacc tggggagctc cagacagatc cttttcaact
      901 tctcaggaga agatatggag tgggatgcag agctctttgc gttggagccc cagttgtctc
      961 ctggggagga ctactatgag acagagaacc ccaaaggaca gtggctgctt cgagaaagac
     1021 tttgggagcg gacggtgccc tgactccatc tggattcctt gacgtgtctc agactgggtc
     1081 cctgagaagc tgtccgcttt cagcgcagca tgaggtattt ggtagagttg aaaatgccaa
     1141 ttgtaacaca gtcaacccac tcagcacact gcctgctggt gccgtgccag tgccaaacag
     1201 acctgtggct tcccagggga caggtctcag gacactctca gagcttgagt ttctctgcgt
     1261 gggctgatga ccagggactt acagcctggc tggtcttcaa gagctgaagg aatggaaggt
     1321 cttgagtgga gtgtctgggc tcactcccct gacctcacct ggcctggtcc tcattctcca
     1381 cgtgtctgtc caggtggctg ctagcaatgt gctcagtacc agaaatgaac tcacctgtag
     1441 atttctgggc caaagcttca aagaggtagc tcctctttct atgaggctca gagacatgct
     1501 ggatctgcac tgaggttgcc gtcttgtgtg cagaatgcag ttgagaaagc agctcctttt
     1561 gctctctttt cagagttttc cagaaactcc tgctgcatta agctaagatg aggctaatgc
     1621 cctggcaatg gggtgaggga aggggtatgt cacgagcctg cctgggggcc acactgtttc
     1681 ctcaggcccc aaaactcagc tccccttcac ataggcaatt gacaagagaa gaagggagat
     1741 ggggtgattc ttttcttttt cttctaattc ttacccagaa aaatcttttt aaatatccat
     1801 ggaaccagtt tatgacaggc cacacctttc cctttcccca gttaagagaa caatcagaat
     1861 cattacgttc ttttggtata gaaaggattt ctgtatttta ggaactatct gaatcagaat
     1921 tacatttaaa atatattctt tgtatttcta aatacttttt acatttttgc aatagttgta
     1981 cccattcaag cttgagaacc actggtttgg agaatatact gaaatttatc tattctcact
     2041 tctttttttg gcattttctt gtaaaccagt ctgtgcatgt ataagggtct ttgggcagaa
     2101 ggaagggaga gagacaaaaa acagaaaaca aaacaaaaca aagaaaacca caatcatttg
     2161 aattaagcca aggatgttct aggctaaggt caggctaaga actgaacaga ggcttccttt
     2221 ctgccatgcc tgtgggatga tattcttatt gttccatttt ttaggaagaa ccttttgttt
     2281 atgtgaacct gatcatatga atctaagaat atgtaactct tacaaataaa aaacagctag
     2341 taattatatt gcattcttag aaattttatc tcaacatgtt ttcagaatga aaccatacta
     2401 gaaatgtttt aatacctctc tttattattt ttcgagtgcc aatgtcaatg tttggaaagt
     2461 ttctttcatt ttgttgcttg tactaaccca gctatagcca gaagcttgac tggaaagtaa
     2521 atgtttagga gatttgtttt ataaactgca ttaaagcact gccatttatc accacagatc
     2581 ttttattttc cctaaatgtg gccttgtttg aagcctcatc tataaaagtt cattgttggg
     2641 gataaactca ggataaaggt gtctttactc tgcctcttat caaactacag tttatcatag
     2701 atccaccctg aaattatgtg gtgaagatac tgtgtacatt ttgtttttaa agataagaaa
     2761 aaataaacat gactgcgagg atgtttggag tcctgatttt ttaaaaagca tttattgctt
     2821 atggcacatg aagctgtgcc gtcttatttt gctttgtttt gtatgttttt tgtctttcat
     2881 gagactatac acagcctgaa aaattccatg attgggaaac agaaggttgt cttgtctttg
     2941 gggatcattt ttaggtgttt gaagttggtg ataaacccaa ggatctgtgc tctgcctggg
     3001 gaatcttgag atggtgtctg gtggggtttg agataaatga aatctgaaac aataaaagtc
     3061 aattcagaaa accca
//
