LOCUS       NM_001190462             672 bp    mRNA    linear   PRI 10-FEB-2024
DEFINITION  Homo sapiens chromosome 11 open reading frame 97 (C11orf97), mRNA.
ACCESSION   NM_001190462 XM_926406 XM_936787
VERSION     NM_001190462.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Stauber,M., Boldt,K., Wrede,C., Weidemann,M., Kellner,M.,
            Schuster-Gossler,K., Kuhnel,M.P., Hegermann,J., Ueffing,M. and
            Gossler,A.
  TITLE     1700012B09Rik, a FOXJ1 effector gene active in ciliated tissues of
            the mouse but not essential for motile ciliogenesis
  JOURNAL   Dev Biol 429 (1), 186-199 (2017)
   PUBMED   28666954
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP000943.5.
            
            On May 17, 2019 this sequence version replaced NM_001190462.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence because no single transcript was available for the
            full length of the gene. The genomic coordinates used for the
            transcript record were based on transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189667.391848.1, BE221825.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2144333
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000542198.3/ ENSP00000490577.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-213               AP000943.5         15724-15936
            214-318             AP000943.5         20846-20950
            319-444             AP000943.5         31347-31472
            445-672             AP000943.5         35159-35386
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
                     /map="11q21"
     gene            1..672
                     /gene="C11orf97"
                     /gene_synonym="LINC01171"
                     /note="chromosome 11 open reading frame 97"
                     /db_xref="GeneID:643037"
                     /db_xref="HGNC:HGNC:49544"
     exon            1..213
                     /gene="C11orf97"
                     /gene_synonym="LINC01171"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..449
                     /gene="C11orf97"
                     /gene_synonym="LINC01171"
                     /note="long intergenic non-protein coding RNA 1171"
                     /codon_start=1
                     /product="uncharacterized protein C11orf97"
                     /protein_id="NP_001177391.1"
                     /db_xref="CCDS:CCDS81618.1"
                     /db_xref="GeneID:643037"
                     /db_xref="HGNC:HGNC:49544"
                     /translation="MTGEEAVVVTAVVAPKAGREEEQPPPPAGLGCGARGEPGRGPLE
                     HGQQWKKFLYCEPHKRIKEVLEEERHIKRDECHIKNPAAVALEGIWSIKRNLPVGGLK
                     PGLPSRNSLLPQAKYYSRHGGLRR"
     exon            214..318
                     /gene="C11orf97"
                     /gene_synonym="LINC01171"
                     /inference="alignment:Splign:2.1.0"
     exon            319..444
                     /gene="C11orf97"
                     /gene_synonym="LINC01171"
                     /inference="alignment:Splign:2.1.0"
     exon            445..672
                     /gene="C11orf97"
                     /gene_synonym="LINC01171"
                     /inference="alignment:Splign:2.1.0"
     regulatory      653..658
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C11orf97"
                     /gene_synonym="LINC01171"
                     /note="hexamer: AATAAA"
     polyA_site      672
                     /gene="C11orf97"
                     /gene_synonym="LINC01171"
                     /note="major polyA site"
ORIGIN      
        1 atgctgggct gcctgcgact gagctgagaa ggaaaccgtg cccagggctc tcggaagacc
       61 gctgcggcat gacaggcgag gaggcggtgg tggtgaccgc agtggtggcg cccaaggcgg
      121 gtcgcgaaga ggagcagcct cctccgccag cagggctggg gtgcggggcg cgcggggaac
      181 ccggccgcgg ccccctagag cacggccagc agtggaagaa atttttatat tgtgagccac
      241 ataagagaat taaggaagta ctggaagaag aacgtcatat taagagagat gaatgccaca
      301 ttaaaaatcc agctgcagtg gccctggaag ggatttggag cattaaaagg aatctgcctg
      361 tgggaggctt gaagccagga ctgccgagca gaaacagttt attgccacaa gccaagtact
      421 actccaggca cggaggactc agaagataag atgaattaga ttttccatta agaaggaacc
      481 tctttctgct gatgtctgaa gaacggagaa gaaactcaag cttgtttcag gatttaagat
      541 gtgtgcaaaa aaatgatagc ctgtaattac tattattggt attaatacct atctataaat
      601 taatccaaag taatgaaaga ctattggtaa tgttcagtaa gtacctgaaa acaataaagg
      661 aaaatatact ta
//
