LOCUS       NM_001271562            1980 bp    mRNA    linear   PRI 03-OCT-2024
DEFINITION  Homo sapiens chromosome 11 open reading frame 71 (C11orf71),
            transcript variant 1, mRNA.
ACCESSION   NM_001271562
VERSION     NM_001271562.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            HY013971.1, AK000017.1 and AP002373.3.
            
            On Jun 2, 2019 this sequence version replaced NM_001271562.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the shorter isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR3476690.562772.1,
                                        SRR1660805.180410.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000623205.2/ ENSP00000492536.1
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-117               HY013971.1         41-157
            118-757             AK000017.1         118-757
            758-758             AP002373.3         35255-35255         c
            759-1441            AK000017.1         759-1441
            1442-1980           AP002373.3         34033-34571         c
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
                     /map="11q23.2"
     gene            1..1980
                     /gene="C11orf71"
                     /gene_synonym="URLC7"
                     /note="chromosome 11 open reading frame 71"
                     /db_xref="GeneID:54494"
                     /db_xref="HGNC:HGNC:25937"
     exon            1..1980
                     /gene="C11orf71"
                     /gene_synonym="URLC7"
                     /inference="alignment:Splign:2.1.0"
     CDS             181..552
                     /gene="C11orf71"
                     /gene_synonym="URLC7"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C11orf71; up-regulated in lung
                     cancer 7"
                     /codon_start=1
                     /product="uncharacterized protein C11orf71 isoform 1"
                     /protein_id="NP_001258491.1"
                     /db_xref="CCDS:CCDS76479.1"
                     /db_xref="GeneID:54494"
                     /db_xref="HGNC:HGNC:25937"
                     /translation="MALNNVSLSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVS
                     RPEAIHLGPRQAVRPSVRAESRRVDGGGRSPREPDGRGRSRQARFSPYPIPAVEPDLL
                     RSVLQQRLIALGGVIAARISV"
     polyA_site      627
                     /gene="C11orf71"
                     /gene_synonym="URLC7"
                     /note="major polyA site"
     regulatory      1415..1420
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C11orf71"
                     /gene_synonym="URLC7"
                     /note="hexamer: AATAAA"
     polyA_site      1441
                     /gene="C11orf71"
                     /gene_synonym="URLC7"
     regulatory      1683..1688
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C11orf71"
                     /gene_synonym="URLC7"
                     /note="hexamer: AATAAA"
     polyA_site      1707
                     /gene="C11orf71"
                     /gene_synonym="URLC7"
     regulatory      1957..1962
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C11orf71"
                     /gene_synonym="URLC7"
                     /note="hexamer: AATAAA"
     polyA_site      1980
                     /gene="C11orf71"
                     /gene_synonym="URLC7"
ORIGIN      
        1 atgctcgcca ggatacccct cgttaaaggc aaggcggctt ctggctcttc cgcaggctca
       61 gttatgggtt cctgtgtgct tagtcatcgg gtccgacaca ggctggactg atctggggag
      121 ccgcgaaggg cctgccttca caaagggacg taacgcaagt actgcgggca gtgtttgaat
      181 atggccctga acaatgtgtc cctgtcctcc ggtgatcaga ggagcagggt ggcctaccgc
      241 tcttcccatg gcgacctcag accgcgggcg tcagcgttgg cgatggtctc cggagacggc
      301 ttcctcgttt ccaggcctga agcgattcat ctaggacctc ggcaggcggt gcgaccaagc
      361 gttcgggccg agagccgtcg agtggatggt ggcggccgga gcccaaggga accagatggc
      421 cggggccgga gccgccaagc cagattctca ccttacccaa tccctgccgt tgaacccgat
      481 ctcctaagaa gtgtgctgca acagcgtttg attgcattag gaggtgttat cgcagctcga
      541 atttcagttt aaacgaacac ctttcctctg gccctcactt agcttgtgaa caggcctttt
      601 taaaatcctt tcttggtgta gcagcaatcg tgttgtttta tttttagatg gatgtatttt
      661 catttaatac gtgggagtta tatgaatatg tcctagcact aagggaagtg taacagttga
      721 ttgatttagg tggttttatg cagccagaac gattggatca ggaaaggtgt ggaagggata
      781 ttcttaggtc gtcacaaagc tgagctgatg ggagcaccct ccccagaggt caacaatcca
      841 ttcgttaact cagacactta acctttacct ttacttctgt tggcgaaaaa gaagtgctcc
      901 tttttattac actgatttat ccttccatct tttccttggc atttaccatc ttccatctcc
      961 cccttcactt ttttcagata tgtctacaaa cagactccaa tctcagtcgc actaaaaata
     1021 agaacaaaac ctaaacctta cagttctttc aaattattaa atcaatttat tattcctttc
     1081 tttggcaaag gttccaaatt tttactttat atttgtaatt ttactatttg cattcagtcc
     1141 cagcgcatta atctgaatct gctgtcctaa aatacactgg tgaaaacatt acttgtacaa
     1201 tctcctatca gaaaactgtt catctactca ctgtagtgcc ctccttgaaa tgtgtgtttg
     1261 ttcattcaac taacaatatt tggggatccc tgtagtaaac actgtatgaa ttttacacag
     1321 tctggccatc aagaaagatc acggagtata ttctagatgg ggaggctact aagtgaatag
     1381 gaatcaccac gctgggctgt ttattaggta cagtaataaa cataagtact ggttgcagtg
     1441 actttttttt tttttttttc atcataatac tgcactatcc tggttcttct cttacctggc
     1501 tgatcactcc ttatttgctg ttatttttgt tctcttaacc atacatttcc caatgtttaa
     1561 agggtggtat tttgagaaag ttaatgggtt ttgtaagtgc cagctcttta tataagcagg
     1621 tagactagct ttttcccagc agacgcttgt ctgtttagac ttccttaaaa taattatctt
     1681 caaataaagc aaaatctcca tacaccacat agtattgaat tgttataact acgtgttaag
     1741 aagaatgttg agtaaacaag atagcttcca taagagggtg attaatatag tgagaattct
     1801 agaaaccaga tcataggaag aatgattgaa agaatagtaa tagctacctt ttattgagtg
     1861 ctatgtgcaa gtcagtgtgc taggacttct attgtttata gagatattta ttgagaactt
     1921 actctgtacc tgctactgcc tgcggtaagc acttagaata aagtggtgaa catgataaaa
//
