LOCUS       NM_001355042             843 bp    mRNA    linear   PRI 09-FEB-2024
DEFINITION  Homo sapiens chromosome 10 open reading frame 143 (C10orf143),
            transcript variant 1, mRNA.
ACCESSION   NM_001355042
VERSION     NM_001355042.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
            Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
            Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
            Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
            Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
            Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
            Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
            Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
            Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
            Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
            Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S., Watanabe,S.,
            Yosida,M., Hotuta,T., Kusano,J., Kanehori,K., Takahashi-Fujii,A.,
            Hara,H., Tanase,T.O., Nomura,Y., Togiya,S., Komai,F., Hara,R.,
            Takeuchi,K., Arita,M., Imose,N., Musashino,K., Yuuki,H., Oshima,A.,
            Sasaki,N., Aotsuka,S., Yoshikawa,Y., Matsunawa,H., Ichihara,T.,
            Shiohata,N., Sano,S., Moriya,S., Momiyama,H., Satoh,N., Takami,S.,
            Terashima,Y., Suzuki,O., Nakagawa,S., Senoh,A., Mizoguchi,H.,
            Goto,Y., Shimizu,F., Wakebe,H., Hishigaki,H., Watanabe,T.,
            Sugiyama,A., Takemoto,M., Kawakami,B., Yamazaki,M., Watanabe,K.,
            Kumagai,A., Itakura,S., Fukuzumi,Y., Fujimori,Y., Komiyama,M.,
            Tashiro,H., Tanigami,A., Fujiwara,T., Ono,T., Yamada,K., Fujii,Y.,
            Ozaki,K., Hirao,M., Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N.,
            Inagaki,H., Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T.,
            Noguchi,S., Itoh,T., Shigeta,K., Senba,T., Matsumura,K.,
            Nakajima,Y., Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T.,
            Oyama,M., Hata,H., Watanabe,M., Komatsu,T., Mizushima-Sugano,J.,
            Satoh,T., Shirai,Y., Takahashi,Y., Nakagawa,K., Okumura,K.,
            Nagase,T., Nomura,N., Kikuchi,H., Masuho,Y., Yamashita,R.,
            Nakai,K., Yada,T., Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
  TITLE     Complete sequencing and characterization of 21,243 full-length
            human cDNAs
  JOURNAL   Nat Genet 36 (1), 40-45 (2004)
   PUBMED   14702039
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL139123.15.
            
            On Nov 23, 2018 this sequence version replaced NM_001355042.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189652.172317.1,
                                           SRR5189655.168490.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2147596 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000637128.2/ ENSP00000490233.1
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-127               AL139123.15        84945-85071         c
            128-292             AL139123.15        53978-54142         c
            293-355             AL139123.15        53807-53869         c
            356-843             AL139123.15        38137-38624         c
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="10"
                     /map="10q26.3"
     gene            1..843
                     /gene="C10orf143"
                     /gene_synonym="LINC00959"
                     /note="chromosome 10 open reading frame 143"
                     /db_xref="GeneID:387723"
                     /db_xref="HGNC:HGNC:48677"
     exon            1..127
                     /gene="C10orf143"
                     /gene_synonym="LINC00959"
                     /inference="alignment:Splign:2.1.0"
     CDS             59..385
                     /gene="C10orf143"
                     /gene_synonym="LINC00959"
                     /note="long intergenic non-protein coding RNA 959"
                     /codon_start=1
                     /product="uncharacterized protein C10orf143"
                     /protein_id="NP_001341971.1"
                     /db_xref="CCDS:CCDS86157.1"
                     /db_xref="GeneID:387723"
                     /db_xref="HGNC:HGNC:48677"
                     /translation="MDSLALGRWRQRRAEDLQVPGDVKRVCRRLEASGHERGCHQVNA
                     CALASWGPEDRELPSRGCLPAPRPESGQGRLSTGISQNGGRSSAQPCPRCIAGESGHF
                     SHTKNH"
     exon            128..292
                     /gene="C10orf143"
                     /gene_synonym="LINC00959"
                     /inference="alignment:Splign:2.1.0"
     exon            293..355
                     /gene="C10orf143"
                     /gene_synonym="LINC00959"
                     /inference="alignment:Splign:2.1.0"
     exon            356..843
                     /gene="C10orf143"
                     /gene_synonym="LINC00959"
                     /inference="alignment:Splign:2.1.0"
     regulatory      816..821
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C10orf143"
                     /gene_synonym="LINC00959"
                     /note="hexamer: ATTAAA"
     polyA_site      843
                     /gene="C10orf143"
                     /gene_synonym="LINC00959"
                     /note="major polyA site"
ORIGIN      
        1 gtggtgcgcg ggcctcggcc aggcctgaga tgccgggagg gtttgaccct ggggctgcat
       61 ggacagctta gcgctcggcc gctggcgaca gcggagggcg gaggatctgc aggttccggg
      121 ggacgtgaaa cgggtatgca ggagattaga agccagtggg catgagcgtg gctgccacca
      181 ggtgaatgcc tgtgccctgg cgtcctgggg cccagaggac cgggagcttc catcaagagg
      241 ctgcctccca gcaccaaggc cagagagtgg ccaggggagg ctaagtacag ggatttctca
      301 gaatggtgga aggagctcag cccagccttg cccaagatgt attgcagggg aatctggaca
      361 ttttagccat accaagaatc attagaagat gcaagctgga aaaaagaagg tcccagtttt
      421 ggttttgaac ccttcatgtt gcagcaaatg tgaatctcct acagatgggt ttggggactt
      481 acctgttcaa atagcagccc ggtgtcctct gtgggtgggg ggaggtttgt ctgtcctttc
      541 attctagtaa atccaccatc ctctgcacga gagccaggag aatccacatc acttcaaaag
      601 agcccccaaa tccttactac gtactacagc ctcctttcga atgttcctgg ttgagaggga
      661 gatcaattgc attatttaca agtcaaaaaa ttttgtatca aacttcctat gagcttgggc
      721 actcatggcc tatggaggcc cacccagacg cagccccgcc atcatgcttt ttcgttgttt
      781 tgtggatgta cccagggcta tttacacact ctttcattaa aaggcttatt tttatattta
      841 aaa
//
