LOCUS       XM_024446196            5279 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens bromodomain containing 9 (BRD9), transcript
            variant X4, mRNA.
ACCESSION   XM_024446196
VERSION     XM_024446196.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000005.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_024446196.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5279
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="5"
     gene            1..5279
                     /gene="BRD9"
                     /gene_synonym="LAVS3040; PRO9856; SMARCI2"
                     /note="bromodomain containing 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 12 ESTs, 58 long SRA reads, and 94% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     17 samples with support for all annotated introns"
                     /db_xref="GeneID:65980"
                     /db_xref="HGNC:HGNC:25818"
                     /db_xref="MIM:618465"
     CDS             145..1716
                     /gene="BRD9"
                     /gene_synonym="LAVS3040; PRO9856; SMARCI2"
                     /codon_start=1
                     /product="bromodomain-containing protein 9 isoform X3"
                     /protein_id="XP_024301964.1"
                     /db_xref="GeneID:65980"
                     /db_xref="HGNC:HGNC:25818"
                     /db_xref="MIM:618465"
                     /translation="MGKKHKKHKAEWRSSYEDYADKPLEKPLKLVLKVGGSEVTELSG
                     SGHDSSYYDDRSDHERERHKEKKKKKKKKSEKEKHLDDEERRKRKEEKKRKREREHCD
                     TEGEADDFDPGKKVEVEPPPDRPVRACRTQPAENESTPIQQLLEHFLRQLQRKDPHGF
                     FAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRP
                     DTVYYKLAKKILHAGFKMMSKERLLALKRSMSFMQDMDFSQQAALLGNEDTAVEEPVP
                     EVVPVQVETAKKSKKPSREVISCMFEPEGNACSLTDSTAEEHVLALVEHAADEARDRI
                     NRFLPGGKMGYLKRNGDGSLLYSVVNTAEPDADEEETHPVDLSSLSSKLLPGFTTLGF
                     KDERRNKVTFLSSATTALSMQNNSVFGDLKSDEMELLYSAYGDETGVQCALSLQEFVK
                     DAGSYSKKVVDDLLDQITGGDHSRTLFQLKQVSPGDRDCVLTTPSALVTLYFHLHLSS
                     LSLSFILKSLKKYFL"
     polyA_site      5279
                     /gene="BRD9"
                     /gene_synonym="LAVS3040; PRO9856; SMARCI2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gtttccggcg cggcccagcg agctcggcaa cctcggcgca gcgagcgcgg gcggccagcc
       61 agggccaggg ggcggtggcg gccaaggtcc gaccgggtgc cagctgttcc cagcccccgc
      121 ctcgggcccg ccgccggcgc cgccatgggc aagaagcaca agaagcacaa ggccgagtgg
      181 cgctcgtcct acgaggatta tgccgacaag cccctggaga agcctctaaa gctagtcctg
      241 aaggtcggag gaagtgaagt gactgaactc tcaggatccg gccacgactc cagttactat
      301 gatgacaggt cagaccatga gcgagagagg cacaaagaaa agaaaaagaa gaagaagaag
      361 aagtccgaga aggagaagca tctggacgat gaggaaagaa ggaagcgaaa ggaagagaag
      421 aagcggaagc gagagaggga gcactgtgac acggagggag aggctgacga ctttgatcct
      481 gggaagaagg tggaggtgga gccgccccca gatcggccag tccgagcgtg ccggacacag
      541 ccagccgaaa atgagagcac acctattcag caactcctgg aacacttcct ccgccagctt
      601 cagagaaaag atccccatgg attttttgct tttcctgtca cggatgcaat tgctcctgga
      661 tattcaatga taataaaaca tcccatggat tttggcacca tgaaagacaa aattgtagct
      721 aatgaataca agtcagttac ggaatttaag gcagatttca agctgatgtg tgataatgca
      781 atgacataca ataggccaga taccgtgtac tacaagttgg cgaagaagat ccttcacgca
      841 ggctttaaga tgatgagcaa agagcggctg ttagctttga agcgcagcat gtcgtttatg
      901 caggacatgg atttttctca gcaggcagct cttttgggca atgaagatac agctgttgag
      961 gaacctgtcc ctgaagttgt accagtacaa gtagaaactg ccaagaaatc caaaaagccg
     1021 agtagagaag ttatcagctg catgtttgag cctgaaggga atgcctgcag cttgacggac
     1081 agtaccgcag aggagcacgt gctggcgctg gtggagcacg cagctgacga agctcgggac
     1141 aggatcaacc ggttcctccc aggcggcaag atgggctatc tgaagaggaa cggggacggg
     1201 agcctgctct acagcgtggt caacacggcc gagccggacg ctgatgagga ggagacccac
     1261 ccggtggact tgagctcgct ctccagtaag ctactcccag gcttcaccac gctgggcttc
     1321 aaagacgaga gaagaaacaa agtcaccttt ctctccagtg ccactactgc gctttcgatg
     1381 cagaataatt cagtatttgg cgacttgaag tcggacgaga tggagctgct ctactcagcc
     1441 tacggagatg agacaggcgt gcagtgtgcg ctgagcctgc aggagtttgt gaaggatgct
     1501 gggagctaca gcaagaaagt ggtggacgac ctcctggacc agatcacagg cggagaccac
     1561 tctaggacgc tcttccagct gaagcaggtg tcccccggag accgtgactg tgtgctcacc
     1621 actcccagcg cactcgtaac tctctatttc catcttcatc tttcatctct gtcactttcc
     1681 ttcatcctga agagtttaaa aaaatatttc ctgtagttca gatttactga cagtgatctc
     1741 tcagcattgg cttctctgaa agtctttatt tcatcttcat ttttgaaatt cattttccct
     1801 gtgtatggaa ttttagatga ccttttttcc catctactgt aaaataggtt tgacttgcat
     1861 tgttgctata aaaaagcatc tgggccaagc atggtggctc acacttgtaa tcccagcact
     1921 ttgggaggcc gaggcgggca gatccaaggt caggaggtcg agaccatcct ggctaacacg
     1981 gtgaaacccc gtctctacta aaaaatagaa aaaattagct gggcgtggtg gcaggtgctt
     2041 gtagtcccag ctactcggga ggctgaggca ggagaatggc atgaacccgg gaggcagagc
     2101 ttgcagtgag ccgagatcat gccactgcac tccagcttgg gccacagagc cagaccccat
     2161 ctccaaaaaa aaaaaaaaag cgtctgaagt cattgtcatc tttgtttccc acatgtgacg
     2221 tgtcttttcg gccagatctg acctgaagtc tgcttttgta cagaccacaa gccaggaatg
     2281 tcttttacat ctttaaaagg gtgtttacag aaaagaaaag gaagaagaag atgcttcggg
     2341 cagcgtgtgg ctcacagagc ctcggctgct cactcccggg ccctcggcag gacgggatct
     2401 ggccggtgct ctaggagctt ttgaactttt atctttcttt atcagtgatt ttcagcattg
     2461 tattttccag gtgccttggt gggcttttct ttgtgttcta cttagcattt gttgtttctt
     2521 ggatctgtct gtagttttca tcatatttgg aagattttta gccattactc aaatgtcatt
     2581 ttccaccact gcctcttcct cctcctgctg gactgtggca ctctgaggac agctcgtgtt
     2641 atctcacatg gcaccgacac tgtgctgccg caccaggctg ctgcagatta gtttctgatg
     2701 ctgttggcta agttcactca cctgttctct ggccacacct gaacctgtta tcccagatca
     2761 gttttcactg atgatgtcgt cccgcgctgc tcatcacttg ggctccattt gctgcttttg
     2821 tgtatcttct ctcatgttgt gtgtatgttt ttccttacat ccttgagcca cgttcgtatt
     2881 tattgctgct gcttttgaag tcctcagtca ctgagtctgt cgcctctgcc gtttccggtt
     2941 ctgtttctgt ttgacacttt gctgcacttg gagctgtggg ccattgtgca cgtgcctggt
     3001 ggacagtcct gaccctcgct gtctgataaa aaagcactgg ccacatggcc gctgggaaat
     3061 ttgaatgtgg ccagtctgaa tttagatgtg atgtgtgagc tacaaactag atcttaaaaa
     3121 actaatgcaa aaaacgtaaa aatatgagta acgatttctt atggcccaca tgttggaata
     3181 aaaacatctt caataaattt gtctaagtaa aatgcattag ttaattgaat gttaagagta
     3241 attttaatgt ggcagctaga attttaagag ctgggtatgg tggcatgcac ctgtcatcag
     3301 ctccacagga ggctaaggtg ggaggatcac ttgaggccgg gaggtcgagg ctgcagtgcg
     3361 attgcaccac cgcactctag gcaatagagc aagaccctgt ctcaaaaaaa agataaaaaa
     3421 acatttagaa cgaggcgtgt gctcgcgtta tgtctgctgg gcaaggctga tctgggttct
     3481 ttctctcttt cagagaatac tgatgatcat tttggcagtt gttacttgtg gataatggcc
     3541 ggatcctacc aggcttgtct ggggtgggtc cagggcagcc ttattctagg gttcgtgtag
     3601 ccttaatgct aaggagtggc ccttcgggga gccctgtctt ttcagcgtgg tctctgctgt
     3661 gggtggagtt cggatgagtc tctgtccttc ccaggctctg agaacgtttg gctcatggct
     3721 cccaaggagg ggtcagtccc ttgacctgac ggtttcatct gtgcttgtta cagatgaact
     3781 ggggtccaca tgcctggtgc agtaaaccca gacacccatg ccgaggtttt gtcatagaaa
     3841 ggacgtgtgt atttgcaggg cgccaagcaa ggtgggccag gaggctcatg tataaatcct
     3901 ggcctccccc actggctaca ggcaaggctt gtaaagcggg ggtagatctc aggaaagcag
     3961 aactgaaagg cagagtcgtg cataaggaca cagaggttac atgtcggctt ggcctagaag
     4021 ggcggtatct gcaagcaggg ccttataggt tataggtgga ttcaaaggtt ttctgatttg
     4081 cagctggtta aggaggagaa gctttgttta aaaatttggg gtgaagagaa aagaatgtta
     4141 gcttaggctt gtgggtgtgg cttcctccag gcccgtcagg aagaaattca gaacaaagaa
     4201 cggggtcaga gctcagtctt cagtttctcc ttatctgagc ccttcatgcc agtagattag
     4261 tttgttgggg aggtcctagg tggagggtcc aggtttctga aagacaactc agggatatac
     4321 attaagatgt tatctttact ttctttcttt ttttttcttt ttgagacata gagtctcact
     4381 ctgtcaccca ggctggagtg cagtggcgtg attgtggctc actgcaacct ctgcctccct
     4441 gattctagcg attctcctgc ctcagcctcc cgagtagctg ggattacagg catgcgccac
     4501 cacacctggc taatttttgt atttttagta gaggcggagt ttcgccatgt tggccaggct
     4561 ggtctttaac tcctgacctc aaatgatgca tccatctcag cctcccagag tggtaggatg
     4621 ttgtcttttc tttctacagg gaacagtgct gggaggttgt ctttactttc tacagggaac
     4681 aaacatctgt ctccaccttc cttgactgtt gttttaggat actgttacct tcttgcttat
     4741 caagtcgctg atttacttct cagagttatc taagtaactg gaatttccct tgaaggaact
     4801 caagattttc cttgatttcc atgcttggag ggctcgcagg cccctgaaga gagggttgca
     4861 gccaggcggg agtccccaag cagatttctg cagctctgag gagcagcccc ctctgcagag
     4921 cctgccccac cagctcgtgg ttctgactct gagctctggt caccctcccg tgtcgtggcc
     4981 tgcaggctcc ttccaggcag gaagctggcc cccccaacac agcgttagaa tcaggcattg
     5041 ctgtggggta gggaaagtga ccccctcaca gcccggaaat gggaaggctc tgtggtttcc
     5101 tctctgggtt ccagttagat tcctttcggg aaagtgaact tggatatgga gttgagtgac
     5161 cccgagtgca cccccgcagt aaatgatgct caggactaaa gtgactgaag gcttttgggg
     5221 aaacagatgc gaacaaaaca gcagtattca ttttctaatt aaaagcttgt gaaaatcga
//
