LOCUS       NM_001393499            6501 bp    mRNA    linear   PRI 12-JUN-2024
DEFINITION  Homo sapiens BICRA like chromatin remodeling complex associated
            protein (BICRAL), transcript variant 3, mRNA.
ACCESSION   NM_001393499
VERSION     NM_001393499.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 6501)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
REFERENCE   2  (bases 1 to 6501)
  AUTHORS   Gatchalian,J., Malik,S., Ho,J., Lee,D.S., Kelso,T.W.R.,
            Shokhirev,M.N., Dixon,J.R. and Hargreaves,D.C.
  TITLE     A non-canonical BRD9-containing BAF chromatin remodeling complex
            regulates naive pluripotency in mouse embryonic stem cells
  JOURNAL   Nat Commun 9 (1), 5139 (2018)
   PUBMED   30510198
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 6501)
  AUTHORS   Alpsoy,A. and Dykhuizen,E.C.
  TITLE     Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its
            paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes
  JOURNAL   J Biol Chem 293 (11), 3892-3903 (2018)
   PUBMED   29374058
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL353716.18 and AL035587.5.
            This sequence is a reference standard in the RefSeqGene project.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14038193.3789012.1,
                                           SRR14038195.1071903.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1968540
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000314073.10/ ENSP00000313933.4
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                AL353716.18        41998-42047
            51-146              AL353716.18        70252-70347
            147-192             AL353716.18        81964-82009
            193-241             AL353716.18        82742-82790
            242-310             AL353716.18        82881-82949
            311-1990            AL353716.18        88439-90118
            1991-2096           AL035587.5         99207-99312         c
            2097-2197           AL035587.5         97666-97766         c
            2198-2259           AL035587.5         95487-95548         c
            2260-2405           AL035587.5         94168-94313         c
            2406-2500           AL035587.5         91048-91142         c
            2501-2603           AL035587.5         88792-88894         c
            2604-6501           AL035587.5         82848-86745         c
FEATURES             Location/Qualifiers
     source          1..6501
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
                     /map="6p21.1"
     gene            1..6501
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /note="BICRA like chromatin remodeling complex associated
                     protein"
                     /db_xref="GeneID:23506"
                     /db_xref="HGNC:HGNC:21111"
                     /db_xref="MIM:618502"
     exon            1..50
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            51..146
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            147..192
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     CDS             152..3391
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /note="glioma tumor suppressor candidate region gene 1
                     protein-like; GLTSCR1 like; BRD4 interacting chromatin
                     remodelling complex associated protein like; BRD4
                     interacting chromatin remodeling complex associated
                     protein like"
                     /codon_start=1
                     /product="BRD4-interacting chromatin-remodeling
                     complex-associated protein-like"
                     /protein_id="NP_001380428.1"
                     /db_xref="CCDS:CCDS34451.1"
                     /db_xref="GeneID:23506"
                     /db_xref="HGNC:HGNC:21111"
                     /db_xref="MIM:618502"
                     /translation="MDDDDDSCLLDLIGDPQALNYFLHGPSNKSSNDDLTNAGYSAAN
                     SNSIFANSSNADPKSSLKGVSNQLGEGPSDGLPLSSSLQFLEDELESSPLPDLTEDQP
                     FDILQKSLQEANITEQTLAEEAYLDASIGSSQQFAQAQLHPSSSASFTQASNVSNYSG
                     QTLQPIGVTHVPVGASFASNTVGVQHGFMQHVGISVPSQHLSNSSQISGSGQIQLIGS
                     FGNHPSMMTINNLDGSQIILKGSGQQAPSNVSGGLLVHRQTPNGNSLFGNSSSSPVAQ
                     PVTVPFNSTNFQTSLPVHNIIIQRGLAPNSNKVPINIQPKPIQMGQQNTYNVNNLGIQ
                     QHHVQQGISFASASSPQGSVVGPHMSVNIVNQQNTRKPVTSQAVSSTGGSIVIHSPMG
                     QPHAPQSQFLIPTSLSVSSNSVHHVQTINGQLLQTQPSQLISGQVASEHVMLNRNSSN
                     MLRTNQPYTGPMLNNQNTAVHLVSGQTFAASGSPVIANHASPQLVGGQMPLQQASPTV
                     LHLSPGQSSVSQGRPGFATMPSVTSMSGPSRFPAVSSASTAHPSLGSAVQSGSSGSNF
                     TGDQLTQPNRTPVPVSVSHRLPVSSSKSTSTFSNTPGTGTQQQFFCQAQKKCLNQTSP
                     ISAPKTTDGLRQAQIPGLLSTTLPGQDSGSKVISASLGTAQPQQEKVVGSSPGHPAVQ
                     VESHSGGQKRPAAKQLTKGAFILQQLQRDQAHTVTPDKSHFRSLSDAVQRLLSYHVCQ
                     GSMPTEEDLRKVDNEFETVATQLLKRTQAMLNKYRCLLLEDAMRINPSAEMVMIDRMF
                     NQEERASLSRDKRLALVDPEGFQADFCCSFKLDKAAHETQFGRSDQHGSKASSSLQPP
                     AKAQGRDRAKTGVTEPMNHDQFHLVPNHIVVSAEGNISKKTECLGRALKFDKVGLVQY
                     QSTSEEKASRREPLKASQCSPGPEGHRKTSSRSDHGTESKLSSILADSHLEMTCNNSF
                     QDKSLRNSPKNEVLHTDIMKGSGEPQPDLQLTKSLETTFKNILELKKAGRQPQSDPTV
                     SGSVELDFPNFSPMASQENCLEKFIPDHSEGVVETDSILEAAVNSILEC"
     exon            193..241
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            242..310
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            311..1990
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            1991..2096
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            2097..2197
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            2198..2259
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            2260..2405
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            2406..2500
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            2501..2603
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     exon            2604..6501
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      6478..6483
                     /regulatory_class="polyA_signal_sequence"
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /note="hexamer: AATACA"
     polyA_site      6501
                     /gene="BICRAL"
                     /gene_synonym="GLTSCR1L; KIAA0240; SMARCK2"
                     /note="major polyA site"
ORIGIN      
        1 gttgcgatgg cgcagaaacc ccgttgacaa ggcactgctt tttcatgacg caaaacgtca
       61 tattatttca caaaaagccc agcgatttca cctgaagaag cttgggaact cctgccaaaa
      121 attgtagcac ttctcacatt gcaatgttgt catggatgat gatgatgact cgtgtctcct
      181 tgatcttatt ggagacccac aagcattgaa ctattttcta catggaccta gtaataaatc
      241 tagcaatgat gacttgacta atgcaggata ttctgcagcc aattcaaatt caattttcgc
      301 caactctagt aatgctgatc ctaagtcatc cctcaaaggt gtaagcaacc agcttggaga
      361 agggcccagt gatggactgc cactttcaag tagcctccag tttcttgaag atgaactcga
      421 gtcttctcct cttcctgatc tcactgagga ccaacctttc gacattcttc agaaatcctt
      481 gcaagaggcc aatatcactg aacagacatt ggcagaagag gcatatttgg atgccagtat
      541 aggttcaagc caacagtttg cacaagctca gcttcatcct tcttcatcag catcctttac
      601 tcaggcttct aatgtttcta attactcagg tcagacgctg cagcctatag gggtgacgca
      661 tgtgcctgtt ggagcatcgt ttgcaagcaa tacagtgggt gtacaacatg gctttatgca
      721 acatgtgggg atcagtgttc ccagccagca tttgtctaat agcagtcaga ttagtggttc
      781 tggtcaaata cagttaattg ggtcatttgg taatcatcct tccatgatga ctattaataa
      841 cctagatgga tctcaaatca tattaaaggg cagcgggcag caagccccat caaatgtgag
      901 tggagggctc ctggttcata gacagactcc taatggcaac tccttgtttg ggaactctag
      961 ttccagtcca gtagcacagc ctgttaccgt tccatttaac agcacaaatt ttcaaacatc
     1021 tttacctgtg cataacatca tcatacaaag gggtcttgca ccaaattcaa ataaagtccc
     1081 aattaatata cagccaaagc ctatccagat gggtcagcaa aatacataca atgtgaacaa
     1141 tttgggaatt cagcagcacc acgtacaaca agggatctct tttgcttctg caagctcacc
     1201 ccagggctca gtagttggtc cacacatgtc tgtgaacatt gtaaaccaac agaacacaag
     1261 aaagccagtc acctcacagg cagtgagcag cactgggggc agtattgtta ttcattcccc
     1321 catgggccaa cctcacgcac cccaaagtca gttccttata cctacaagcc tttctgtcag
     1381 ttccaactcg gtacaccacg tccagactat aaatgggcaa cttcttcaaa ctcaaccctc
     1441 tcagctcatt tctggccaag tggcctcaga gcatgtcatg ttgaacagaa actcttccaa
     1501 catgctcagg accaaccaac catatactgg accgatgctt aacaaccaga atactgctgt
     1561 ccacttagtg tctgggcaga catttgctgc ctctggaagt ccagtgatag ccaatcatgc
     1621 ctctcctcag cttgtgggtg gacagatgcc cttgcagcag gcatccccaa ctgtattaca
     1681 cctgtcacct gggcagagca gcgtttccca aggaagacct ggcttcgcca ccatgccatc
     1741 ggtgacaagc atgtcaggac ctagtcggtt ccctgctgtc agctcagcca gcactgccca
     1801 tcctagtctt gggtctgcag ttcagtctgg ttcatcagga tcaaacttta caggagatca
     1861 gctgacccag ccaaacagga ctccagtacc agtcagtgtg tctcatcgtc ttccagtttc
     1921 ttcttccaag tctaccagca ccttcagtaa cacacctgga acaggaaccc agcaacaatt
     1981 cttctgccag gctcagaaaa aatgtctgaa tcagacttcc cccatttctg ctcccaagac
     2041 cacagacggc ctgaggcaag cacagatccc tgggctcttg agcaccacac tgccagggca
     2101 ggattctgga agcaaagtta tatccgcatc cttaggaacc gcacaaccac agcaggaaaa
     2161 agtagttgga tcatctcctg gccatccagc tgtgcaggtg gagagtcatt cgggaggaca
     2221 aaaaaggcct gctgcgaaac agctaacgaa aggagctttc attctccagc agttgcagag
     2281 ggaccaagcc cacactgtga caccagacaa aagtcacttc cgatcactaa gtgatgcggt
     2341 acagagactg ctctcctacc acgtgtgcca gggctccatg cccactgaag aagacttgag
     2401 aaaagtggac aatgaatttg agacagttgc cactcagctc ctaaaaagga cccaagctat
     2461 gcttaacaaa tacagatgcc tgctcctaga agatgccatg cgaatcaatc cctctgctga
     2521 gatggtgatg atcgatagga tgttcaacca ggaggaaaga gcttccctgt cccgagacaa
     2581 gcgtttggca cttgtagacc ctgagggttt tcaggctgat ttctgttgtt ccttcaaact
     2641 tgataaagct gctcatgaga cacagtttgg ccggagtgac cagcatggca gtaaagcaag
     2701 cagctctctg caaccgccag ccaaggccca aggcagagac cgagccaaaa ccggtgtgac
     2761 ggaacccatg aatcatgacc agtttcatct agtgcctaat cacatcgtgg tctctgcaga
     2821 aggaaacatt tctaaaaaaa cagaatgcct tggcagagca ctgaaatttg acaaagtggg
     2881 cttagtgcag taccagagca cgtctgaaga gaaggccagc cggagagagc ctctgaaggc
     2941 cagtcagtgc tctcccggcc ctgaggggca ccggaaaacc tcatccagat cggatcatgg
     3001 tactgagagc aaactgtcaa gcatcctagc agattcgcac ttggagatga cgtgtaacaa
     3061 ttccttccag gacaaaagtc tgaggaattc tccaaagaat gaagttttac acacagacat
     3121 catgaaaggg tcaggcgaac cccagccaga tctccagctg acaaagagct tggaaaccac
     3181 atttaagaac atcttggaac tcaaaaaggc gggacggcag ccccagagtg accccacggt
     3241 tagcggctct gttgagttag atttccccaa cttttctcct atggcttcac aggaaaactg
     3301 cctggaaaag ttcatcccgg accacagtga aggtgttgta gaaactgact ccattttaga
     3361 agcagctgta aatagtatcc tagagtgtta atagcagcag tcctccccct accccgcccc
     3421 gagaccccac cccgagaccc caccccggac cagttacatt cgttcctggc aaaagcaaat
     3481 ggaaatggtc tcctgtctcc agcctgcttg atctttcatc acaggttatt ctttctaatc
     3541 tcaatcctgt tctttgttta agagcaatac ttgtcgtgat tacagggaga tcctttagta
     3601 aaattaatcc ttggcagaaa gcagtctgat aggccccact catttcaagt gttatgaaag
     3661 tgcttatagg cattttgttt atttgttttg ttttttaaaa acactgtaac tcaatgagac
     3721 cacagtatac ttggcccttg gtaaaatttt gacaatcata agtcatttga aaagaacaga
     3781 cttactaaaa tcaaacgaga cggatagaag ctacttttta aagaatatcc cactgcatct
     3841 gcaaatttag ttttgggttt ttttattatt attattttga gtttttttgt gtgtgttttg
     3901 ttgttattgt tgaggggaag accacatggt tcttccccct cagccatctt tgagcagtaa
     3961 attgctggct gtgctgccag ggacccgcag ccctggtgga aaagccagta gcacatacgc
     4021 agggcattgc agggcttccc tattgatggt tcaagtgctt ttctgatgct tccggagcaa
     4081 aacctcatgc ttttaggcat atctatgttg aatttcacct agggaatgtt ctgttcttag
     4141 ttacagcagc aaaatttgaa ataatttcac caggctaaat aaaggaaaat ggaaaccagt
     4201 taagaggcac agtgtacaga ggaggccggg atagagccat gagggttata atattaatat
     4261 gtatatatgt aaaagcatat atatgttaac tattgagaaa aaacaagttt tgcattttat
     4321 aattggatat agtcaacata taatgtatgt ttttgtttgt tgctggattt tgtttcattt
     4381 aacctctctt tgcaccctct cccacaacaa ataccaagca tcaaaagcac tttcatttga
     4441 aaattattat gttgtaattt ttcagtttaa actttaagga gactctggcc ttgtttatgc
     4501 ttcttgtctg agaacagtag tgacccctgg cagcaattca ttaccaaaac acagacaaac
     4561 caaaggtaac cagctagccc accactgaaa ggaaagatct gagacatggg attcccattt
     4621 gagagccaaa ggatatgccc tgtcatggtt tctgtttggc ctgtgttcat attagtgagc
     4681 atggcttact gctttattta tttttatttc ttgtcaggga gtattctccg ttttcctttc
     4741 tcgtatacct gccccaggtt atcccatttc tgttgttacc tttattctta atgtcattgt
     4801 aaccatcact tatctcctct cattgggaaa gctacatgat agtattttta tgcactcttc
     4861 tcccacacat acacacacgt gcatgtatct gagctgctcg gatccagagg tcatttttgt
     4921 tacagtgtgt gcacactcac tctccttctt agtgtgcata ctctctcatt tattctgttt
     4981 atctccctgg ctctggaggt gcagccactg gtcttcactt taatgtgttg ccagaatctg
     5041 cttctggctg tcgccaacat ggggatgacc cccattgtca tcatgttggg catttctttt
     5101 ccagattggc ctgtgatgga aaggaaggct tctaattaga aaacacagca acagaagacc
     5161 tataccccgg tgcccctgtg tcccactaca cacagaaaac cctgtgagat ggccagtctt
     5221 cataatagca acgtaccttc accccagcca catgccccag ccaatacaaa ttggaaaatc
     5281 tggcccattt tagggttacc attttttcct tatttgtgcc aatgtccaag ttgcagattt
     5341 cccctttttc ctgtattgta acatattaga taagttggtg tcgccagttg gtactttctg
     5401 tttgggtagt cctagggtaa caccctgccc taaactccat gatttcatag gcttttcttc
     5461 ccttggggct catgctcccc taattcctag caagatgatc cttcctaatc aaattcttct
     5521 cattgcagaa ctttatccct ggaagccttc atgtgggctg ctagtgagtt acattaatta
     5581 ctgcaaatca gtggaattct caagagacaa gataagcttc atgtacattt gtcacctctc
     5641 tttcttccct atcctgccct gctgtcccaa tcctagcttt tctatatacc atcctaaagg
     5701 gtttttaagc cctaacactt gtctagcaaa tggagagcct aatttaccaa aatgaaactt
     5761 gtaaattttt gtgtcattgt atgtaagttt actttttatg gaggaaggat tctagataat
     5821 gacaaatgaa gattatgaca tgtatttcac tcctgtgatt aggttctacg cacatgggtc
     5881 ataactcgca tgtcgagccc cctctagtga agggtaggag agctcagcct cggatggcca
     5941 acattcagtt gttcaggttc attcgtcaaa gttaagtttt agaactattt gtactcagta
     6001 acaaaaatca ttttcttttt tttttttttt ttctgttgtg gaaaagcgtg aatttgttat
     6061 taagcatttg attttctgtg tccttaagta cttcctgaag atgaagcaaa attttaatct
     6121 ggcaattatg aaaaagaaat attttagctc tgaaggattt agtagattct gttagattag
     6181 ggaggcctta cagactgact ttacttaaag aggacgcgtc actcgctgtc agtgtggtgt
     6241 gggctttatt tgcttaaata ccttcatttg tatagtacgt ctcacttgaa attgctttgt
     6301 atacattttg taaaaatatt tataaaatgt tttgtaaaaa aaaaaaaact ataacaaatt
     6361 gcagtttatt ttgttatgtt ggataaatac tgttaaaaga aaccagtcag taactatatt
     6421 gttaatccat ggttaggaaa tgtttagttg gagattacaa attgaaacaa ccattgcaat
     6481 acagccaaag atttgggaaa a
//
