LOCUS       NM_001386823            3856 bp    mRNA    linear   PRI 11-JUN-2024
DEFINITION  Homo sapiens beta-1,3-galactosyltransferase 9 (B3GALT9), mRNA.
ACCESSION   NM_001386823
VERSION     NM_001386823.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3856)
  AUTHORS   Petit,D., Teppa,R.E. and Harduin-Lepers,A.
  TITLE     A phylogenetic view and functional annotation of the animal
            beta1,3-glycosyltransferases of the GT31 CAZy family
  JOURNAL   Glycobiology 31 (3), 243-259 (2021)
   PUBMED   32886776
REFERENCE   2  (bases 1 to 3856)
  AUTHORS   Tsuritani,K., Irie,T., Yamashita,R., Sakakibara,Y., Wakaguri,H.,
            Kanai,A., Mizushima-Sugano,J., Sugano,S., Nakai,K. and Suzuki,Y.
  TITLE     Distinct class of putative 'non-conserved' promoters in humans:
            comparative studies of alternative promoters of human and mouse
            genes
  JOURNAL   Genome Res 17 (7), 1005-1014 (2007)
   PUBMED   17567985
REFERENCE   3  (bases 1 to 3856)
  AUTHORS   Humphray,S.J., Oliver,K., Hunt,A.R., Plumb,R.W., Loveland,J.E.,
            Howe,K.L., Andrews,T.D., Searle,S., Hunt,S.E., Scott,C.E.,
            Jones,M.C., Ainscough,R., Almeida,J.P., Ambrose,K.D., Ashwell,R.I.,
            Babbage,A.K., Babbage,S., Bagguley,C.L., Bailey,J., Banerjee,R.,
            Barker,D.J., Barlow,K.F., Bates,K., Beasley,H., Beasley,O.,
            Bird,C.P., Bray-Allen,S., Brown,A.J., Brown,J.Y., Burford,D.,
            Burrill,W., Burton,J., Carder,C., Carter,N.P., Chapman,J.C.,
            Chen,Y., Clarke,G., Clark,S.Y., Clee,C.M., Clegg,S., Collier,R.E.,
            Corby,N., Crosier,M., Cummings,A.T., Davies,J., Dhami,P., Dunn,M.,
            Dutta,I., Dyer,L.W., Earthrowl,M.E., Faulkner,L., Fleming,C.J.,
            Frankish,A., Frankland,J.A., French,L., Fricker,D.G., Garner,P.,
            Garnett,J., Ghori,J., Gilbert,J.G., Glison,C., Grafham,D.V.,
            Gribble,S., Griffiths,C., Griffiths-Jones,S., Grocock,R., Guy,J.,
            Hall,R.E., Hammond,S., Harley,J.L., Harrison,E.S., Hart,E.A.,
            Heath,P.D., Henderson,C.D., Hopkins,B.L., Howard,P.J., Howden,P.J.,
            Huckle,E., Johnson,C., Johnson,D., Joy,A.A., Kay,M., Keenan,S.,
            Kershaw,J.K., Kimberley,A.M., King,A., Knights,A., Laird,G.K.,
            Langford,C., Lawlor,S., Leongamornlert,D.A., Leversha,M., Lloyd,C.,
            Lloyd,D.M., Lovell,J., Martin,S., Mashreghi-Mohammadi,M.,
            Matthews,L., McLaren,S., McLay,K.E., McMurray,A., Milne,S.,
            Nickerson,T., Nisbett,J., Nordsiek,G., Pearce,A.V., Peck,A.I.,
            Porter,K.M., Pandian,R., Pelan,S., Phillimore,B., Povey,S.,
            Ramsey,Y., Rand,V., Scharfe,M., Sehra,H.K., Shownkeen,R.,
            Sims,S.K., Skuce,C.D., Smith,M., Steward,C.A., Swarbreck,D.,
            Sycamore,N., Tester,J., Thorpe,A., Tracey,A., Tromans,A.,
            Thomas,D.W., Wall,M., Wallis,J.M., West,A.P., Whitehead,S.L.,
            Willey,D.L., Williams,S.A., Wilming,L., Wray,P.W., Young,L.,
            Ashurst,J.L., Coulson,A., Blocker,H., Durbin,R., Sulston,J.E.,
            Hubbard,T., Jackson,M.J., Bentley,D.R., Beck,S., Rogers,J. and
            Dunham,I.
  TITLE     DNA sequence and analysis of human chromosome 9
  JOURNAL   Nature 429 (6990), 369-374 (2004)
   PUBMED   15164053
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL161911.17.
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000689072.1/ ENSP00000508889.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-456               AL161911.17        35563-36018
            457-643             AL161911.17        38519-38705
            644-3856            AL161911.17        40671-43883
FEATURES             Location/Qualifiers
     source          1..3856
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9q33.2"
     gene            1..3856
                     /gene="B3GALT9"
                     /gene_synonym="B3GNT10"
                     /note="beta-1,3-galactosyltransferase 9"
                     /db_xref="GeneID:100288842"
                     /db_xref="HGNC:HGNC:53652"
                     /db_xref="MIM:620239"
     exon            1..456
                     /gene="B3GALT9"
                     /gene_synonym="B3GNT10"
                     /inference="alignment:Splign:2.1.0"
     exon            457..643
                     /gene="B3GALT9"
                     /gene_synonym="B3GNT10"
                     /inference="alignment:Splign:2.1.0"
     CDS             638..1747
                     /gene="B3GALT9"
                     /gene_synonym="B3GNT10"
                     /note="UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase 5 pseudogene;
                     putative UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase LOC402377;
                     putative UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase LOC100288842;
                     UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase 10 (putative)"
                     /codon_start=1
                     /product="beta-1,3-galactosyltransferase 9"
                     /protein_id="NP_001373752.1"
                     /db_xref="CCDS:CCDS94472.1"
                     /db_xref="GeneID:100288842"
                     /db_xref="HGNC:HGNC:53652"
                     /db_xref="MIM:620239"
                     /translation="MQVTFCRLRTHQWCFILFNVILFHALLFGTDFVEEYFLHSLPYI
                     DVKVLEIKNKARKLNIEPLRSNLSKYYVLSQSEICKGKNIFLLSLIFSSPGNGTRRDL
                     IRKTWGNVTSVQGHPILTLFALGMPVSVTTQKEINKESCKNNDIIEGIFLDSSENQTL
                     KIIAMIQWAVAFCPNALFILKVDEETFVNLPSLVDYLLNLKEHLEDIYVGRVLHQVTP
                     NRDPQNRDFVPLSEYPEKYYPDYCSGEAFIMSQDVARMMYVVFKEVPMMVPADVFVGI
                     CAKFIGLIPIHSSRFSGKRHIRYNRCCYKFIFTSSEIADPEMPLAWKEINDGKECTLF
                     ETSYELISCKLLTYLDSFKRFHMGTIKNNLMYFAD"
     exon            644..3856
                     /gene="B3GALT9"
                     /gene_synonym="B3GNT10"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1878
                     /gene="B3GALT9"
                     /gene_synonym="B3GNT10"
                     /note="major polyA site"
     regulatory      3832..3837
                     /regulatory_class="polyA_signal_sequence"
                     /gene="B3GALT9"
                     /gene_synonym="B3GNT10"
                     /note="hexamer: AATAAA"
     polyA_site      3856
                     /gene="B3GALT9"
                     /gene_synonym="B3GNT10"
                     /note="major polyA site"
ORIGIN      
        1 gcacttccgg tccccgcccg gaggtgggtg gtgggaggct ggaggccggg agtaggggtg
       61 gggagaagag cgtcccggga agctgaacgc gtgccgcgcg gccctcacgg tgcttaggct
      121 gggtgcaacc tagaacggag gttcctttcg taccgtacat ccaggtttgc acagcgcgct
      181 tatgtccctc ctccaatctg atcttgcacc agctctgcag tagtttttct tattatcctc
      241 attttacgga ggagagggag ctgtggctta gagaagttaa gagacgtgtc caaattcata
      301 caacctgttg ggcacctctt tatcccgaac gctgttctag gggatagggt tagtgaacaa
      361 aaaacgcaaa agcccctgac cgcctgggcc ttacatctat taggaggagg aagacagata
      421 aactaaggct cgtgcaaagg agaaaaataa agcaagtcag caggtattct aggataaaag
      481 ctcaggttga ttggcaagaa accttatcct caaaagttga ggcacaaagt actttactgc
      541 aattgctgtt agactagagt gatcctgaga tgcgtttggg cataattggc acctggactc
      601 aataatttct aagaccctga agttgctcac aggcaacatg caagtgactt tctgcagact
      661 tcggactcac cagtggtgtt tcattctatt taatgtcatc ctatttcatg ccttgctttt
      721 tgggactgac tttgtggagg aatactttct gcattctttg ccttatatag atgtgaaagt
      781 tcttgaaatt aagaataagg caagaaaatt gaacatcgaa cccctaagaa gtaatctctc
      841 caaatattat gtcctgagcc agtcagaaat atgtaaaggg aagaacattt ttttgctgtc
      901 tcttatcttc agtagcccag gaaatggaac aagacgggac ctcattagga aaacttgggg
      961 caatgtgacc agtgtccaag ggcatcccat tctcacactg tttgctctgg gaatgcctgt
     1021 ttcggtaact acccagaaag agatcaacaa agaatcctgt aagaataatg atataattga
     1081 aggaatcttc ttggacagtt ctgagaacca aaccctgaag atcattgcaa tgatacagtg
     1141 ggctgtggct ttctgcccta atgccctgtt cattctcaag gtggatgaag agacgtttgt
     1201 caatctacca agcttggtag actatcttct caatctgaaa gaacacctag aagatatcta
     1261 tgtaggaaga gttcttcatc aggttacacc caatagagat cctcagaaca gagactttgt
     1321 ccctcttagt gagtacccag aaaaatacta cccagattac tgcagtggtg aggcctttat
     1381 aatgtcccaa gatgtggctc gaatgatgta tgtggttttc aaagaagtac ccatgatggt
     1441 gccagctgat gtgtttgtag gaatttgtgc taagttcatt ggccttatac ccatccacag
     1501 ctcaaggttt tctgggaaaa ggcacattag atacaacaga tgttgctata agttcatttt
     1561 tacatcctca gaaattgcag atcctgaaat gcccctagca tggaaggaaa ttaatgatgg
     1621 aaaagaatgt acactgtttg agacatccta tgagctcatt tcctgcaaac ttctgacgta
     1681 ccttgacagc tttaaacgtt ttcacatggg gaccataaaa aacaatctca tgtattttgc
     1741 tgattaggat ttctttaatt ttccttatga gtctactatt ttaaagttac cttctaccct
     1801 gttatggaaa gcatcccttc tttcccatgt tttatgtagg ttctctgaat ctttaatttt
     1861 atttgcaaag gtacaaaatg ttttctgtgc tctggtgtgc tcaattactg agatctcaaa
     1921 tttttaaaaa atttaagttg gtgtagcata attcttttca aaatgaaata tttctctcaa
     1981 aagagagaac attatgtttc attgtttatt tagttttcgt tttttttttt tcttttgaga
     2041 cagggtctgg ctctgtcacc caggctggag tgcagtggcg caatctcgac tcactgcaac
     2101 ctccaccgcc tgggctcaag ggatcctccc acctcagcct tttgagtagc tgagactata
     2161 ggcatgtgcc accatacccg gctaattttt tttttttttt ttcggagaca gagtcttgct
     2221 ctgtcgccca ggctggagtg caatggcacc atctctgttc actgcaacct ctgcctccca
     2281 ggttaaagca attctcctgc ctcagcctcc caagtagctg ggattacagg tgcctgccac
     2341 cacgcctggc taatttttgg tatttttagt agaggcgggg tttcaccatg ttggccaggc
     2401 tggtctcgaa ctcctggcct caagtgatcc acccgcctgg gcctcccaaa gtgctgggat
     2461 tacaggtgtg agccaccacg cctggcctaa tttttgtatt tttttataga gatgggggtt
     2521 tcatgatgtt gcccacgctg gtcttgaact cctgggctca agtgatcctc ccacctcagc
     2581 ctcccaaagt cccaaagtgt tgggattata ggtgtgagga accgtacctg gccagtacac
     2641 aattcattat aactaagttt ttttttttat aaactgacta gtaaaaatta tgtatattta
     2701 tgttgtacaa catgttttga tatatgtata tgttatagaa tggctaaatc aagctattta
     2761 acacatgcat cacctgacat acttttttgt agtgagaaca cttaaaatct actctactaa
     2821 caattatcag atattgatat attgctgtta attgtcatga ccatgatgta tgatagagct
     2881 cttgaactta ttcctcatgt ctaacaaaaa tgttggatct cttggccata tctgccaagt
     2941 tttcccaacc cccagtctct ggtaacctcc atttactctc tgtttctatg aatttgagtt
     3001 tttttacact ccacatataa gtgagctcat gtgcttattt gtccttcaat gcctggttta
     3061 tttcatgtaa cataatgcac tccaggttca tccatgttgt tggaaatgac aggatttctt
     3121 tcatttataa ggctgaatag cattttattg tggatatata ccacattttc tttattcatg
     3181 cactggtgga cacttagata gatgccacta atcttgtgaa taatgctgca ttgaatgtgg
     3241 ggagtgcaga tatctcttta acatactgat ttaatatctt ttggatatat ttccagtagc
     3301 ggaattgcta gattgtgtgg cagttctatt tttaattttg tgaggaacct ccataatggc
     3361 tgtattattg gtttaccata atggctcatt gtggttttac tttgcatttc cctgatgatt
     3421 agtggtattg agcatttttt tttcatatac ctgttggcca tttgtacttc ttcttttgag
     3481 aaatgtctat ttagggcctt tggtcatttc taagtcaggt tatttgggca gggcacagtg
     3541 gctcatggct gtaatcccag cactttggga ggccaaggca ggtgggtcac ctgagatggg
     3601 aattcaagag cagcctggcc aacagggtga aaccccgcct ctactaaaca tacaaaaaat
     3661 tagctggacc cggtggtacg tgcctgtaat cccagctacg cgggaggctg acacaggaaa
     3721 atcgcttgaa tccaggaggt ggaggttgca gtgagccgag atcatgccac tgcactccag
     3781 cctgggcaac agtctgagac tctatctcaa aaaacaaaat aaaataaaat aaataaagtg
     3841 atttgctttc atgcta
//
