LOCUS       NM_016466                892 bp    mRNA    linear   PRI 09-FEB-2024
DEFINITION  Homo sapiens ankyrin repeat domain 39 (ANKRD39), mRNA.
ACCESSION   NM_016466
VERSION     NM_016466.6
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Rush,J., Moritz,A., Lee,K.A., Guo,A., Goss,V.L., Spek,E.J.,
            Zhang,H., Zha,X.M., Polakiewicz,R.D. and Comb,M.J.
  TITLE     Immunoaffinity profiling of tyrosine phosphorylation in cancer
            cells
  JOURNAL   Nat Biotechnol 23 (1), 94-101 (2005)
   PUBMED   15592455
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX091421.1, DA769410.1 and BU626151.1.
            
            On Nov 23, 2018 this sequence version replaced NM_016466.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1163658.458153.1,
                                           SRR5189664.123912.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA1965299,
                                           SAMEA1966682 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000393537.5/ ENSP00000377170.4
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-100               BX091421.1         4-103
            101-573             DA769410.1         101-573
            574-892             BU626151.1         20-338              c
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="2"
                     /map="2q11.2"
     gene            1..892
                     /gene="ANKRD39"
                     /note="ankyrin repeat domain 39"
                     /db_xref="GeneID:51239"
                     /db_xref="HGNC:HGNC:28640"
     exon            1..129
                     /gene="ANKRD39"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..581
                     /gene="ANKRD39"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 39"
                     /protein_id="NP_057550.3"
                     /db_xref="CCDS:CCDS2028.1"
                     /db_xref="GeneID:51239"
                     /db_xref="HGNC:HGNC:28640"
                     /translation="MATPRPCADGPCCSHPSAVLGVQQTLEEMDFERGIWSAALNGDL
                     GRVKHLIQKAEDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALH
                     RASYCGHTEIARLLLSHGSNPRVVDDDGMTSLHKAAERGHGDICSLLLQHSPALKAIR
                     DRKARLACDLLPCNSDLRDLLSS"
     exon            130..233
                     /gene="ANKRD39"
                     /inference="alignment:Splign:2.1.0"
     exon            234..437
                     /gene="ANKRD39"
                     /inference="alignment:Splign:2.1.0"
     exon            438..892
                     /gene="ANKRD39"
                     /inference="alignment:Splign:2.1.0"
     regulatory      820..825
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ANKRD39"
                     /note="hexamer: AATAAA"
     polyA_site      842
                     /gene="ANKRD39"
                     /note="major polyA site"
     regulatory      869..874
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ANKRD39"
                     /note="hexamer: ATTAAA"
     polyA_site      892
                     /gene="ANKRD39"
ORIGIN      
        1 ggggcggatc gactgacgcc ggggccggga tggcgacgcc tcggccctgc gcggacgggc
       61 cctgctgctc gcatcccagc gcggtgctcg gcgtacagca gacgctggag gagatggact
      121 tcgagagggg aatctggtcg gcagccctga atggagacct gggccgagtg aagcatttaa
      181 tccagaaggc cgaggaccca agtcagcccg actcggccgg ctacactgcg ctgcactatg
      241 ccagccgcaa tgggcactac gctgtgtgcc agttcctgct ggaaagcgga gctaagtgtg
      301 atgcccagac ccacgggggt gccactgctc tgcaccgagc cagctactgc gggcacactg
      361 aaatcgcgcg gctcctgcta tcacatgggt ccaaccccag ggtggtggat gacgacggca
      421 tgaccagtct gcataaggct gctgagaggg gtcacgggga catctgctcc ctcctcctgc
      481 aacacagccc agccctgaag gccatccggg accgaaaggc acggctagca tgtgacctgc
      541 tgccttgcaa cagtgacctg cgggacctgc tatccagctg agccgccacc ctatctccag
      601 ctgcctttaa agggtacaca gaccagttct ccaagcccct gccttggtca gcatccatgc
      661 tgctgggcag ggaactgagg ccagaccacc caggaagagc cccagtctgg tcactgtgga
      721 agcgagggag tagatttggt gtggctaaaa gtgtttaaga ctggacagat gatcatattc
      781 taaattagtt catatgagac atctatttat ttggaaaaaa ataaagttat atccttacct
      841 catcccacac ccaaagataa attgcaagat taaagatcta aatataaaaa ca
//
