LOCUS       XM_024450529            5111 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens ATP binding cassette subfamily A member 9
            (ABCA9), transcript variant X1, mRNA.
ACCESSION   XM_024450529
VERSION     XM_024450529.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000017.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_024450529.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5111
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="17"
     gene            1..5111
                     /gene="ABCA9"
                     /gene_synonym="EST640918"
                     /note="ATP binding cassette subfamily A member 9; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 19 ESTs, 12 long SRA reads, 9 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 14 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:10350"
                     /db_xref="HGNC:HGNC:39"
                     /db_xref="MIM:612507"
     CDS             85..4989
                     /gene="ABCA9"
                     /gene_synonym="EST640918"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family A member 9
                     isoform X1"
                     /protein_id="XP_024306297.1"
                     /db_xref="GeneID:10350"
                     /db_xref="HGNC:HGNC:39"
                     /db_xref="MIM:612507"
                     /translation="MGNGKQVKMSKRRMSVGQQTWALLCKNCLKKWRMKRQTLLEWLF
                     SFLLVLFLYLFFSNLHQVHDTPQMSSMDLGRVDSFNDTNYVIAFAPESKTTQEIMNKV
                     ASAPFLKGRTIMGWPDEKSMDELDLNYSIDAVRVIFTDTFSYHLKFSWGHRIPMMKEH
                     RDHSAHCQAVNEKMKCEGSEFWEKGFVAFQAAINAAIIEIATNHSVMEQLMSVTGVHM
                     KILPFVAQGGVATDFFIFFCIISFSTFIYYVSVNVTQERQYITSLMTMMGLRESAFWL
                     SWGLMYAGFILIMATLMALIVKSAQIVVLTGFVMVFTLFLLYGLSLITLAFLMSVLIK
                     KPFLTGLVVFLLIVFWGILGFPALYTRLPAFLEWTLCLLSPFAFTVGMAQLIHLDYDV
                     NSNAHLDSSQNPYLIIATLFMLVFDTLLYLVLTLYFDKILPAEYGHRCSPLFFLKSCF
                     WFQHGRANHVVLENETDSDPTPNDCFEPVSPEFCGKEAIRIKNLKKEYAGKCERVEAL
                     KGVVFDIYEGQITALLGHSGAGKTTLLNILSGLSVPTSGSVTVYNHTLSRMADIENIS
                     KFTGFCPQSNVQFGFLTVKENLRLFAKIKGILPHEVEKEVQRVVQELEMENIQDILAQ
                     NLSGGQNRKLTFGIAILGDPQVLLLDEPTAGLDPLSRHRIWNLLKEGKSDRVILFSTQ
                     FIDEADILADRKVFISNGKLKCAGSSLFLKKKWGIGYHLSLHLNERCDPESITSLVKQ
                     HISDAKLTAQSEEKLVYILPLERTNKFPELYRDLDRCSNQGIEDYGVSITTLNEVFLK
                     LEGKSTIDESDIGIWGQLQTDGAKDIGSLVELEQVLSSFHETRKTISGVALWRQQVCA
                     IAKVRFLKLKKERKSLWTILLLFGISFIPQLLEHLFYESYQKSYPWELSPNTYFLSPG
                     QQPQDPLTHLLVINKTGSTIDNFLHSLRRQNIAIEVDAFGTRNGTDDPSYNGAIIVSG
                     DEKDHRFSIACNTKRLNCFPVLLDVISNGLLGIFNSSEHIQTDRSTFFEEHMDYEYGY
                     RSNTFFWIPMAASFTPYIAMSSIGDYKKKAHSQLRISGLYPSAYWFGQALVDVSLYFL
                     ILLLMQIMDYIFSPEEIIFIIQNLLIQILCSIGYVSSLVFLTYVISFIFRNGRKNSGI
                     WSFFFLIVVIFSIVATDLNEYGFLGLFFGTMLIPPFTLIGSLFIFSEISPDSMDYLGA
                     SESEIVYLALLIPYLHFLIFLFILRCLEMNCRKKLMRKDPVFRISPRSNAIFPNPEEP
                     EGEEEDIQMERMRTVNAMAVRDFDETPVIIASCLRKEYAGKKKNCFSKRKKKIATRNV
                     SFCVKKGEVIGLLGHNGAGKSTTIKMITGDTKPTAGQVILKGSGGGEPLGFLGYCPQE
                     NALWPNLTVRQHLEVYAAVKGLRKGDAMIAITRLVDALKLQDQLKAPVKTLSEGIKRK
                     LCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQVIRATFRNTERGALLTTHYMAEAEA
                     VCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKLKNLAQMEPLHAEILRLFPQAAQ
                     QERFSSLMVYKLPVEDVRPLSQAFFKLEIVKQSFDLEEYSLSQSTLEQVFLELSKEQE
                     LGDLEEDFDPSSLDCESMFCLLCL"
     polyA_site      5111
                     /gene="ABCA9"
                     /gene_synonym="EST640918"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 acttccacag actgcttgct gagcaacttc tggatcgcat ataattagaa aaaggataaa
       61 tataattgaa tcaatattga gagaatggga aatgggaaac aggtcaaaat gagcaagaga
      121 cgcatgagcg tgggtcagca aacatgggct cttctctgca agaactgtct caaaaaatgg
      181 agaatgaaaa gacagacctt gttggaatgg ctcttttcat ttcttctggt actgtttctg
      241 tacctatttt tctccaattt acatcaagtt catgacactc ctcaaatgtc ttcaatggat
      301 ctgggacgtg tagatagttt taatgatact aattatgtta ttgcatttgc acctgaatcc
      361 aaaactaccc aagagataat gaacaaagtg gcttcagccc cattcctaaa aggaagaaca
      421 atcatggggt ggcctgatga aaaaagcatg gatgaattgg atttgaacta ttcaatagac
      481 gcagtgagag tcatctttac tgataccttc tcctaccatt tgaagttttc ttggggacat
      541 agaatcccca tgatgaaaga gcacagagac cattcagctc actgtcaagc agtgaatgaa
      601 aaaatgaagt gtgaaggttc agagttctgg gagaaaggct ttgtagcttt tcaagctgcc
      661 attaatgctg ctatcataga aatcgcaaca aatcattcag tgatggaaca gctgatgtca
      721 gttactggtg tacatatgaa gatattacct tttgttgccc aaggaggagt tgcaactgat
      781 tttttcattt tcttttgcat tatttctttt tctacattta tatactatgt atcagtcaat
      841 gttacacaag aaagacaata cattacgtca ttgatgacaa tgatgggact ccgagagtca
      901 gcattctggc tttcctgggg tttgatgtat gctggcttca tccttatcat ggccacttta
      961 atggctctta ttgtaaaatc tgcacaaatt gtcgtcctga ctggttttgt gatggtcttc
     1021 accctctttc tcctctatgg cctgtctttg ataactttag ctttcctgat gagtgtgttg
     1081 ataaagaaac ctttccttac gggcttggtt gtgtttctcc ttattgtctt ttgggggatc
     1141 ctgggattcc cagcattgta tacacgtctt cctgcatttt tggaatggac tttgtgtctt
     1201 cttagcccct ttgccttcac tgttgggatg gcccagctta tacatttgga ctatgatgtg
     1261 aattctaatg cccacttgga ttcttcacaa aatccatacc tcataatagc tactcttttc
     1321 atgttggttt ttgacaccct tctgtatttg gtattgacat tatattttga caaaattttg
     1381 cccgctgaat atggacatcg atgttctccc ttgtttttcc tgaaatcctg tttttggttt
     1441 caacacggaa gggctaatca tgtggtcctt gagaatgaaa cagattctga tcctacacct
     1501 aatgactgtt ttgaaccagt gtctccagaa ttctgtggga aagaagccat cagaatcaaa
     1561 aatcttaaaa aagaatatgc agggaagtgt gagagagtag aagctttgaa aggtgtggtg
     1621 tttgacatat atgaaggcca gatcactgcc ctccttggtc acagtggagc tggaaaaact
     1681 accctgttaa acatacttag tgggttgtca gttccaacat caggttcagt cactgtctat
     1741 aatcacacac tttcaagaat ggctgatata gaaaatatca gcaagttcac tggattttgt
     1801 ccacaatcca atgtgcaatt tggatttctc actgtgaaag aaaacctcag gctgtttgct
     1861 aaaataaaag ggattttgcc acatgaagtg gagaaagagg tacaacgagt tgtacaggaa
     1921 ttagaaatgg aaaatattca agacatcctt gctcaaaact taagtggtgg acaaaatagg
     1981 aaactaactt ttgggattgc cattttagga gatcctcaag ttttgctatt ggatgaaccg
     2041 actgctggat tggatcctct ttcaaggcac cgaatatgga atctcctgaa agaggggaaa
     2101 tcagacagag taattctctt cagcacccag tttatagatg aggctgacat tctggcggac
     2161 aggaaggtgt tcatatccaa tgggaagctg aagtgtgcag gctcttctct gttccttaag
     2221 aagaaatggg gcataggcta ccatttaagt ttgcatctga atgaaaggtg tgatccagag
     2281 agtataacat cactggttaa gcagcacatc tctgatgcca aattgacagc acaaagtgaa
     2341 gaaaaacttg tatatatttt gcctttggaa aggacaaaca aatttccaga actttacagg
     2401 gatcttgata gatgttctaa ccaaggcatt gaggattatg gtgtttccat aacaactttg
     2461 aatgaggtgt ttctgaaatt agaaggaaaa tcaactattg atgaatcaga tattggaatt
     2521 tggggacaat tacaaactga tggggcaaaa gatataggaa gccttgttga gctggaacaa
     2581 gttttgtctt ccttccacga aacaaggaaa acaatcagtg gcgtggcgct ctggaggcag
     2641 caggtctgtg caatagcaaa agttcgcttc ctaaagttaa agaaagaaag aaaaagcctg
     2701 tggactatat tattgctttt tggtattagc tttatccctc aacttttgga acatctattc
     2761 tacgagtcat atcagaaaag ttacccgtgg gaactgtctc caaatacata cttcctctca
     2821 ccaggacaac aaccacagga tcctctgacc catttactgg tcatcaataa gacagggtca
     2881 accattgata actttttaca ttcactgagg cgacagaaca tagctataga agtggatgcc
     2941 tttggaacta gaaatggcac agatgaccca tcttacaatg gtgctatcat tgtgtcaggt
     3001 gatgaaaagg atcacagatt ttcaatagca tgtaatacaa aacggctgaa ttgctttcct
     3061 gtcctcctgg atgtcattag caatggacta cttggaattt ttaattcgtc agaacacatt
     3121 cagactgaca gaagcacatt ttttgaagag catatggatt atgagtatgg gtaccgaagt
     3181 aacaccttct tctggatacc gatggcagcc tctttcactc catacattgc aatgagcagc
     3241 attggtgact acaaaaaaaa agctcattcc cagctacgga tttcaggcct ctacccttct
     3301 gcatactggt ttggccaagc actggtggat gtttccctgt actttttgat cctcctgcta
     3361 atgcaaataa tggattatat ttttagccca gaggagatta tatttataat tcaaaacctg
     3421 ttaattcaaa tcctgtgtag tattggctat gtctcatctc ttgttttctt gacatatgtg
     3481 atttcattca tttttcgcaa tgggagaaaa aatagtggca tttggtcatt tttcttctta
     3541 attgtggtca tcttctcgat agttgctact gatctaaatg aatatggatt tctagggcta
     3601 ttttttggca ccatgttaat acctcccttc acattgattg gctctctatt cattttttct
     3661 gagatttctc ctgattccat ggattactta ggagcttcag aatctgaaat tgtatacctg
     3721 gcactgctaa taccttacct tcattttctc atttttcttt tcattctgcg atgcctagaa
     3781 atgaactgca ggaagaaact aatgagaaag gatcctgtgt tcagaatttc tccaagaagc
     3841 aacgctattt ttccaaaccc agaagagcct gaaggagagg aggaagatat ccagatggaa
     3901 agaatgagaa cagtgaatgc tatggctgtg cgagactttg atgagacacc cgtcatcatt
     3961 gccagctgtc tacggaagga atatgcaggc aaaaagaaaa attgcttttc taaaaggaag
     4021 aaaaaaattg ccacaagaaa tgtctctttt tgtgttaaaa aaggtgaagt tataggactg
     4081 ttaggacaca atggagctgg taaaagtaca actattaaga tgataactgg agacacaaaa
     4141 ccaactgcag gacaggtgat tttgaaaggg agcggtggag gggaacccct gggcttcctg
     4201 gggtactgcc ctcaggagaa tgcgctgtgg cccaacctga cagtgaggca gcacctggag
     4261 gtgtacgctg ccgtgaaagg tctcaggaaa ggggacgcaa tgatcgccat cacacggtta
     4321 gtggatgcgc tcaagctgca ggaccagctg aaggctcccg tgaagacctt gtcagaggga
     4381 ataaagcgaa agctgtgctt tgtgctgagc atcctgggga acccgtcagt ggtgcttctg
     4441 gatgagccgt cgaccgggat ggaccccgag gggcagcagc aaatgtggca ggtgattcgg
     4501 gccaccttta gaaacacgga gaggggcgcc ctcctgacca cccactacat ggcagaggct
     4561 gaggcggtgt gtgaccgagt ggccatcatg gtgtcaggaa ggctgagatg tattggttcc
     4621 atccaacacc tgaaaagcaa atttggcaaa gactacctgc tggagatgaa gctgaagaac
     4681 ctggcacaaa tggagcccct ccatgcagag atcctgaggc ttttccccca ggctgctcag
     4741 caggaaaggt tctcctccct gatggtctat aagttgcctg ttgaggatgt gcgaccttta
     4801 tcacaggctt tcttcaaatt agagatagtt aaacagagtt tcgacctgga ggagtacagc
     4861 ctctcacagt ctaccctgga gcaggttttc ctggagctct ccaaggagca ggagctgggt
     4921 gatcttgaag aggactttga tccctcgagt ttagattgtg agtccatgtt ttgtctgttg
     4981 tgcctataaa ggaaatttga aatctgtatc attctactat aaagacacat gcacacgtat
     5041 gtttattgca gcactgttta caatagcaaa gacttggaac caaccaaaat acccacaaat
     5101 gatagaccgg a
//
